In angiosperms,the process of pollination relies on species-specific interaction and signaling between the male(pollen)and female(pistil)counterparts where the interplay between several pollen and stigma proteins deci...In angiosperms,the process of pollination relies on species-specific interaction and signaling between the male(pollen)and female(pistil)counterparts where the interplay between several pollen and stigma proteins decides the fate of the pollen.In Brassicaceae,the dry stigmatic papillary cells control pollen germination by releasing resources only to compatible pollen thereby allowing pollen to hydrate and germinate.Despite the identification of a number of stigmatic proteins that facilitate pollination responses,the signaling mechanisms that regulate functions of these proteins have remained unknown.Here,we show that,in Arabidopsis,an extremely functionally redundant mitogen-activated protein kinase(MAPK)cascade is required for maintaining stigma receptivity to accept compatible pollen.Our genetic analyses demonstrate that in stigmas,five MAPK kinases(MKKs),MKK1/2/3/7/9 are required to transmit upstream signals to two MPKs,MPK3/4,to mediate compatible pollination.Compromised functions of these five MKKs in the quintuple mutant(mkk1/2/3RNAi/mkk7/9)phenocopied pollination defects observed in the m pk4RNAi/m pk3 double mutant.We further show that this MAPK nexus converges on Exo70A1,a previously identified stigma receptivity factor essential for pollination.Given that pollination is the crucial initial step during plant reproduction,understanding the mechanisms that govern successful pollination could lead to development of strategies to improve crop yield.展开更多
The problem of phase retrieval underlies various imaging methods from astronomy to nanoscale imaging.Traditional phase retrieval methods are iterative and are therefore computationally expensive.Deep learning(DL)model...The problem of phase retrieval underlies various imaging methods from astronomy to nanoscale imaging.Traditional phase retrieval methods are iterative and are therefore computationally expensive.Deep learning(DL)models have been developed to either provide learned priors or completely replace phase retrieval.However,such models require vast amounts of labeled data,which can only be obtained through simulation or performing computationally prohibitive phase retrieval on experimental datasets.Using 3D X-ray Bragg coherent diffraction imaging(BCDI)as a representative technique,we demonstrate AutoPhaseNN,a DL-based approach which learns to solve the phase problem without labeled data.By incorporating the imaging physics into the DL model during training,AutoPhaseNN learns to invert 3D BCDI data in a single shot without ever being shown real space images.Once trained,AutoPhaseNN can be effectively used in the 3D BCDI data inversion about 100×faster than iterative phase retrieval methods while providing comparable image quality.展开更多
Dear Editor, Self-incompatibility (SI) is a genetic mechanism through which flowering plants prevent self-pollination to ensure out- crossing and genetic diversity. In Brassica sp., this mechanism is controlled by ...Dear Editor, Self-incompatibility (SI) is a genetic mechanism through which flowering plants prevent self-pollination to ensure out- crossing and genetic diversity. In Brassica sp., this mechanism is controlled by the self-incompatibility (S) locus, in which, the stigmatic 'S-locus receptor kinase (SRK)' recognizes the 'S-locus cysteine rich protein (SCR)' from the self-pollen to elicit an active rejection response. This results in blocking of compatibil- ity factors from being delivered to the site of pollen attachment leading to self-pollen rejection (Chapman and Goring, 2010). In contrast, following recognition of compatible signals from the cross-pollen or compatible pollen (CP), the stigma releases its resources such as water and nutrients to the dry pollen so that the pollen tube can germinate and penetrate the stigmatic cuticle leading to successful fertilization. Thus, an incompatible or self-pollen is fully capable of eliciting a compatible response, but is actively rejected before compatible responses can occur.展开更多
基金Natural Sciences and Engineering Research Council of Canada funding for M.A.S.
文摘In angiosperms,the process of pollination relies on species-specific interaction and signaling between the male(pollen)and female(pistil)counterparts where the interplay between several pollen and stigma proteins decides the fate of the pollen.In Brassicaceae,the dry stigmatic papillary cells control pollen germination by releasing resources only to compatible pollen thereby allowing pollen to hydrate and germinate.Despite the identification of a number of stigmatic proteins that facilitate pollination responses,the signaling mechanisms that regulate functions of these proteins have remained unknown.Here,we show that,in Arabidopsis,an extremely functionally redundant mitogen-activated protein kinase(MAPK)cascade is required for maintaining stigma receptivity to accept compatible pollen.Our genetic analyses demonstrate that in stigmas,five MAPK kinases(MKKs),MKK1/2/3/7/9 are required to transmit upstream signals to two MPKs,MPK3/4,to mediate compatible pollination.Compromised functions of these five MKKs in the quintuple mutant(mkk1/2/3RNAi/mkk7/9)phenocopied pollination defects observed in the m pk4RNAi/m pk3 double mutant.We further show that this MAPK nexus converges on Exo70A1,a previously identified stigma receptivity factor essential for pollination.Given that pollination is the crucial initial step during plant reproduction,understanding the mechanisms that govern successful pollination could lead to development of strategies to improve crop yield.
基金This work was performed,in part,at the Advanced Photon Source,a U.S.Department of Energy(DOE)Office of Science User Facility,operated for the DOE Office of Science by Argonne National Laboratory under Contract No.DE-AC02-06CH11357This research used resources of the Argonne Leadership Computing Facility,which is a DOE Office of Science User Facility supported under Contract DE-AC02-06CH11357+2 种基金This work was supported by the U.S.Department of Energy,Office of Science,Office of Basic Energy Sciences Data,Artificial Intelligence and Machine Learning at DOE Scientific User Facilities program under Award Number 34532M.J.C.acknowledges partial support from Argonne LDRD 2021-0090-AutoPtycho:Autonomous,Sparse-sampled Ptychographic ImagingY.Y.acknowledges partial support from Argonne LDRD 2021-0315-Scalable DL-based 3D X-ray nanoscale imaging enabled by AI accelerators.
文摘The problem of phase retrieval underlies various imaging methods from astronomy to nanoscale imaging.Traditional phase retrieval methods are iterative and are therefore computationally expensive.Deep learning(DL)models have been developed to either provide learned priors or completely replace phase retrieval.However,such models require vast amounts of labeled data,which can only be obtained through simulation or performing computationally prohibitive phase retrieval on experimental datasets.Using 3D X-ray Bragg coherent diffraction imaging(BCDI)as a representative technique,we demonstrate AutoPhaseNN,a DL-based approach which learns to solve the phase problem without labeled data.By incorporating the imaging physics into the DL model during training,AutoPhaseNN learns to invert 3D BCDI data in a single shot without ever being shown real space images.Once trained,AutoPhaseNN can be effectively used in the 3D BCDI data inversion about 100×faster than iterative phase retrieval methods while providing comparable image quality.
文摘Dear Editor, Self-incompatibility (SI) is a genetic mechanism through which flowering plants prevent self-pollination to ensure out- crossing and genetic diversity. In Brassica sp., this mechanism is controlled by the self-incompatibility (S) locus, in which, the stigmatic 'S-locus receptor kinase (SRK)' recognizes the 'S-locus cysteine rich protein (SCR)' from the self-pollen to elicit an active rejection response. This results in blocking of compatibil- ity factors from being delivered to the site of pollen attachment leading to self-pollen rejection (Chapman and Goring, 2010). In contrast, following recognition of compatible signals from the cross-pollen or compatible pollen (CP), the stigma releases its resources such as water and nutrients to the dry pollen so that the pollen tube can germinate and penetrate the stigmatic cuticle leading to successful fertilization. Thus, an incompatible or self-pollen is fully capable of eliciting a compatible response, but is actively rejected before compatible responses can occur.