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Polycyclic Aromatic Hydrocarbon Molecule-Surface Binding Energies in Site Specific Graphene Bilayer Nanopores: A Puzzle-ene Force Field Calculation 被引量:1
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作者 thomas r. rybolt Claire B. Black 《Graphene》 2017年第3期72-84,共13页
Two-dimensional molecular recognition studies of the six polyaromatic hydro-carbons that can be formed from the combination of four benzene rings: tetracene, pyrene, 1,2-benzanthracene, 3,4-benzphenanthrene, triphenyl... Two-dimensional molecular recognition studies of the six polyaromatic hydro-carbons that can be formed from the combination of four benzene rings: tetracene, pyrene, 1,2-benzanthracene, 3,4-benzphenanthrene, triphenylene, and chrysene were explored for each of these six molecules interacting with six different graphene layer site-specific nanopores. Computational studies were done for the gas phase adsorption on single layer graphene, bilayer graphene, and six molecule-specific graphene bilayer nanopores. Molecular mechanics MM2 parameters have been shown previously to provide good comparisons to experimental adsorption energies for aromatic hydrocarbons adsorption on graphitic surfaces. These binding energies are dominated by van der Waals forces. Just as a jigsaw puzzle hole can accommodate only a specific piece, two-dimensional shape specific sites were created in the top layer of a graphene bilayer to match each one of the six adsorbate molecules. The purpose of this study was to examine the molecular recognition possibilities of site specific adsorption in these simple two-dimensional nanopores based on dispersion forces and molecular shape. For example, triphenylene has a calculated surface binding energy of 24.5 kcal/mol on the graphene bilayer and 30.2 kcal/mol in its own site specific pore. The interaction energy of this molecule in the other five sites ranged from 17.6 to 23.8 kcal/mol. All the molecules tetracene, pyrene, 1,2-benzanthracene, triphenylene and chrysene had higher binding energies in their matched molecule bilayer sites than on either single or double layer graphene. In addition, each one of these five molecules had a stronger binding in their own shape specific (puzzle-ene) site than any of the other molecular sites. The results suggest that two-dimensional molecular recognition based on shape specific pores may allow selectivity useful for applications such as sensors, separations, nanofabrication, or information storage. 展开更多
关键词 Molecule-Graphene Interaction MOLECULAR Mechanics Adsorption ENERGY Binding ENERGY on GRAPHENE POLYCYCLIC Aromatic Hydrocarbons Two-Dimensional MOLECULAR Recognition
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Modeling Enhanced Adsorption of Explosive Molecules on a Hydroxylated Graphene Pore 被引量:1
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作者 ronald Scott Holt thomas r. rybolt 《Graphene》 2019年第1期1-18,共18页
The possibility of a graphene bilayer nanosensor for the detection of explosive molecules was modeled using computational chemistry. A pore was designed on a graphene bilayer structure with three strategically placed ... The possibility of a graphene bilayer nanosensor for the detection of explosive molecules was modeled using computational chemistry. A pore was designed on a graphene bilayer structure with three strategically placed perimeter hydroxyl (OH) groups built around the edge of an indented, two-dimensional hexagonal pore. This hydroxylated pore and models of various explosive molecules were optimized using MM2 molecular mechanics parameters. Values were calculated for the molecule-surface interaction energy (binding energy), E, for 22 explosive molecules on a flat graphene bilayer and on the specially designed hydroxylated pore within the bilayer. The molecule-surface binding energy for trinitrotoluene (TNT) increased from 17.9 kcal/mol on the flat graphene bilayer to 42.3 kcal/mol on the hydroxylated pore. Due to the common functionality of nitro groups that exist on many explosive molecules, the other explosive molecules studied gave similar enhancements based on the specific hydrogen bonding interactions formed within the pore. Each of the 22 explosive adsorbate molecules showed increased molecule-surface interaction on the bilayer hydroxylated pore as compared to the flat bilayer. For the 22 molecules, the average E for the flat graphite surface was 15.8 kcal/mol and for the hydroxylated pore E was 33.8 kcal/mol. An enhancement of adsorption should make a detection device more sensitive. Nanosensors based on a modified graphene surface may be useful for detecting extremely low concentrations of explosive molecules or explosive signature molecules. 展开更多
关键词 Molecular Mechanics Explosives Molecule-Surface Binding Energy Hydroxylated GRAPHENE PORE GRAPHENE BILAYER ENHANCED ADSORPTION for Explosives
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Storage and Timed Release of Acetaminophen from Porous Carbonaceous Materials
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作者 Sarah E. McCary thomas r. rybolt 《Open Journal of Physical Chemistry》 2013年第2期76-88,共13页
Six carbon powders with varied surface areas and porosities were used to store and release acetaminophen (ACT). A 10 mg/mL solution of acetaminophen in phosphate buffer solution (pH = 7.0) at 25℃ with exposure to car... Six carbon powders with varied surface areas and porosities were used to store and release acetaminophen (ACT). A 10 mg/mL solution of acetaminophen in phosphate buffer solution (pH = 7.0) at 25℃ with exposure to carbon powder for 72 hours was used to drive the maximum loading of acetaminophen into the powders. Carboxen 1012 (BET surface area of1500 m2/g) powder exhibited the greatest maximum adsorption of ACT (up to 62% by mass). The maximum ACT adsorption was correlated with surface area and porosity. The most effective carbon powders for binding ACT were ones containing high mesopore volumes. Loaded carbon powder was separated from the ACT solution and then phosphate buffer solution (pH = 7.0) was combined with the loaded carbon powder and ACT absorbance readings at 243 nm were taken over time. The various carbon powders were able to release a portion of the ACT that they originally adsorbed. The Carboxen 1012 powder displayed the greatest ACT release with a rapid initial release followed by a steady but slightly declining release over a time period of 2 to 11 weeks. The results were supportive of mesoporous carbons such as Carboxen 1012 being suitable for drug loading and release. 展开更多
关键词 Carbon POWDERS Drug RELEASE Adsorption of ACETAMINOPHEN MESOPOROSITY STORAGE of ACETAMINOPHEN
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Force Field Based MM2 Molecule-Surface Binding Energies for Graphite and Graphene
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作者 Jae H. Son thomas r. rybolt 《Graphene》 2013年第1期18-34,共17页
The gas phase adsorption of 118 organic molecules on graphite and graphene was studied by calculating their molecule surface binding energies, Ecal*, using molecular mechanics MM2 parameters. Due to the general lack o... The gas phase adsorption of 118 organic molecules on graphite and graphene was studied by calculating their molecule surface binding energies, Ecal*, using molecular mechanics MM2 parameters. Due to the general lack of reported experimental binding energy values for organic molecules with graphene, E*(graphene), it was considered desirable to have a simple but effective method to estimate these values. Calculated binding energy values using a three-layer model, Ecal*(3), were compared and correlated to published experimental values for graphitic surfaces, E*(graphite). Pub-lished values of experimental binding energies for graphite, E*(graphite), were available from gas-solid chromatogram-phy in the Henry’s Law region over a range of temperature. Calculated binding energy values using a one-layer model, Ecal*(1), were compared to the three-layer Ecal*(3) values and found to consistently be 93.5% as large. This relation along with an E*(graphite) and Ecal*(3) correlation was used to develop a means to estimate molecule-graphene bind-ing energies. Using this approach we report estimated values of 118 molecule-graphene binding energy values. 展开更多
关键词 Molecule-Graphene INTERACTION Molecule-Graphite INTERACTION Molecular Mechanics Adsorption ENERGY BINDING ENERGY on GRAPHENE BINDING ENERGY on GRAPHITE
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