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Beyond biogeographic patterns:Processes shaping the microbial landscape in soils and sediments along the Yangtze River
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作者 Wenjie Wan Geoffrey MGadd +4 位作者 Ji‐Dong Gu wenzhi liu Peng Chen Quanfa Zhang Yuyi Yang 《mLife》 CSCD 2023年第1期89-100,共12页
Deciphering biogeographic patterns of microorganisms is important for evaluating the maintenance of microbial diversity with respect to the ecosystem functions they drives.However,ecological processes shaping distribu... Deciphering biogeographic patterns of microorganisms is important for evaluating the maintenance of microbial diversity with respect to the ecosystem functions they drives.However,ecological processes shaping distribution patterns of microorganisms across large spatial‐scale watersheds remain largely unknown.Using Illumina sequencing and multiple statistical methods,we characterized distribution patterns and maintenance diversity of microorganisms(i.e.,archaea,bacteria,and fungi)in soils and sediments along the Yangtze River.Distinct microbial distribution patterns were found between soils and sediments,and microbial community similarity significantly decreased with increasing geographical distance.Physicochemical properties showed a larger effect on microbial community composition than geospatial and climatic factors.Archaea and fungi displayed stronger species replacements and weaker environmental constraints in soils than that in sediments,but opposite for bacteria.Archaea,bacteria,and fungi in soils showed broader environmental breadths and stronger phylogenetic signals compared to those in sediments,suggesting stronger environmental adaptation.Stochasticity dominated community assemblies of archaea and fungi in soils and sediments,whereas determinism dominated bacterial community assembly.Our results have therefore highlighted distinct microbial distribution patterns and diversity maintenance mechanisms between soils and sediments,and emphasized important roles of species replacement,environmental adaptability,and ecological assembly processes on microbial landscape.Our findings are helpful in predicting loss of microbial diversity in the Yangtze River Basin,and might assist the establishment of environmental policies for protecting fragile watersheds. 展开更多
关键词 environmental breadth environmental constraint phylogenetic signal species replacement stochasticity versus determinism
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鲤疱疹病毒Ⅱ型ORF25B编码蛋白诱饵载体的构建及其互作蛋白的筛选
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作者 聂细荣 薛明洋 +7 位作者 林格 李逸群 范玉顶 刘文枝 孟彦 江南 曾令兵 周勇 《微生物学报》 CAS CSCD 北大核心 2021年第10期3103-3113,共11页
【目的】鲤疱疹病毒Ⅱ型(Cyprinid herpesvirus 2,CyHV-2)感染养殖鲫引起的鲫造血器官坏死病,给鲫养殖业造成了重大的经济损失。揭示CyHV-2感染宿主细胞的机制,是建立鲫造血器官坏死病有效防治技术的重要基础。【方法】本研究针对CyHV-... 【目的】鲤疱疹病毒Ⅱ型(Cyprinid herpesvirus 2,CyHV-2)感染养殖鲫引起的鲫造血器官坏死病,给鲫养殖业造成了重大的经济损失。揭示CyHV-2感染宿主细胞的机制,是建立鲫造血器官坏死病有效防治技术的重要基础。【方法】本研究针对CyHV-2富含抗原表位的ORF25B区域设计引物,扩增ORF25B基因截短序列。将扩增产物克隆至酵母双杂交诱饵载体pGBKT7,构建诱饵载体pGBKT7-tORF25B,转化至酵母菌株Y2HGold中。在营养缺陷型培养基上,验证诱饵表达载体pGBKT7-tORF25B对酵母菌Y2HGold自激活现象和毒性作用。利用酵母双杂交技术,将诱饵菌株pGBKT7-tORF25B/Y2HGold与鲫脑组织细胞系(GiCB)cDNA文库杂交。【结果】ORF25B基因截短序列扩增大小约为981 bp,成功构建了诱饵菌株pGBKT7-tORF25B/Y2H Gold,自激活和毒性验证结果表明,诱饵表达载体对酵母菌株无自激活现象,也无毒性作用,初步筛选出4种与tORF25B基因编码蛋白互作的宿主蛋白。【结论】本研究结果为深入开展CyHV-2 ORF25B编码蛋白功能及病毒入侵宿主细胞的机制研究奠定了重要基础。 展开更多
关键词 鲤疱疹病毒Ⅱ型 ORF25B基因 酵母双杂交 诱饵载体 互作蛋白
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