Pear ring rot,caused by the pathogenic fungi Botryosphaeria dothidea,seriously affects pear production.While the infection-induced reactive oxygen species(ROS)burst of infected plants limits the proliferation of B.dot...Pear ring rot,caused by the pathogenic fungi Botryosphaeria dothidea,seriously affects pear production.While the infection-induced reactive oxygen species(ROS)burst of infected plants limits the proliferation of B.dothidea during the early infection stage,high ROS levels can also contribute to their growth during the later necrotrophic infection stage.Therefore,it is important to understand how plants balance ROS levels and resistance to pathogenic B.dothidea during the later stage.In this study,we identified PbrChiA,a glycosyl hydrolases 18(GH18)chitinase-encoding gene with high infection-induced expression,through a comparative transcriptome analysis.Artificial substitution,stable overexpression,and virus induced gene silencing(VIGS)experiments demonstrated that PbrChiA can positively regulate pear resistance as a secreted chitinase to break down B.dothidea mycelium in vitro and that overexpression of PbrChiA suppressed infection-induced ROS accumulation.Further analysis revealed that PbrChiA can bind to the ectodomain of PbrLYK1b2,and this interaction suppressed PbrLYK1b2-mediated chitin-induced ROS accumulation.Collectively,we propose that the combination of higher antifungal activity from abundant PbrChiA and lower ROS levels during later necrotrophic infection stage confer resistance of pear against B.dothidea.展开更多
Accurate soil moisture content measurements are vital to precision irrigation management. Remote sensing using the microwave spectrum (such as GPS signals) has been used for measuring large area soil moisture contents...Accurate soil moisture content measurements are vital to precision irrigation management. Remote sensing using the microwave spectrum (such as GPS signals) has been used for measuring large area soil moisture contents. In our previous work, we estimated surface soil moisture contents for bare soil using a GPS Delay Mapping Receiver (DMR) developed by NASA. However, the effect of vegetation was not considered in these studies. Hence the objectives of this study were to: 1) investigate the feasibility of using DMR to determine soil moisture content in cotton production fields;2) evaluate the attenuation effect of vegetation (cotton) on reflected GPS signal. Field experiments were conducted during the 2013 and 2014 growing seasons in South Carolina. GPS antennas were mounted at three heights (1.6, 2.7, and 4.2 m) over cotton fields to measure reflected GPS signals (DMR readings). DMR readings, soil core samples, and plant measurements were collected about once a week and attenuation effect of plant canopy was calculated. Results showed that DMR was able to detect soil moisture changes within one week after precipitation events that were larger than 25 mm per day. However, the DMR readings were poorly correlated with soil volumetric water content during dry periods. Attenuation effect of plant canopy was not significant. For irrigation purpose, the results suggested that the sensitivity of reflected GPS signals to soil moisture changes needed to be further studied before this technology could be utilized for irrigation scheduling in cotton production. Refinement of this technology will expand the use of advanced remote sensing technology for site-specific and timely irrigation scheduling. This would eliminate the need to install moisture sensors in production fields, which can interfere with farming operations and increase production costs.展开更多
Genome fractionation(also known as diploidization)frequently occurs following paleopolyploidization events.Biased fractionation between subgenomes has been found in some paleo-allopolyploids,while this phenomenon is a...Genome fractionation(also known as diploidization)frequently occurs following paleopolyploidization events.Biased fractionation between subgenomes has been found in some paleo-allopolyploids,while this phenomenon is absent in paleo-autopolyploids.Pear(Pyrus bretschneideri Rehd.)experienced a recent whole-genome duplication(WGD,~30 million years ago);however,the evolutionary fate of the two subgenomes derived from this WGD event is not clear.In this study,we identified the two paleo-subgenomes in pear using peach(Prunus persica)as an outgroup and investigated differences in the gene loss rate,evolutionary rate,gene expression level,and DNA methylation level between these two subgenomes.Fractionation bias was not found between the two pear subgenomes,which evolved at similar evolutionary rates.The DNA methylation level of the two subgenomes showed little bias,and we found no expression dominance between the subgenomes.However,we found that singleton genes and homeologous genes within each subgenome showed divergent evolutionary patterns of selective constraints,expression and epigenetic modification.These results provide insights into subgenome evolution following paleopolyploidization in pear.展开更多
Soil moisture monitoring is one of the methods that farmers can use for irrigation scheduling. Many sensor types and data logging systems have been developed for this purpose over the years, but their widespread adopt...Soil moisture monitoring is one of the methods that farmers can use for irrigation scheduling. Many sensor types and data logging systems have been developed for this purpose over the years, but their widespread adoption in practical irrigation scheduling is still limited due to a variety of factors. Important factors limiting adoption of soil moisture sensing technology by farmers include high cost and difficulties in timely data collection and interpretation. Recent developments in open source microcontrollers (such as Arduino), wireless communication, and Internet-of-Things (IoT) technologies offer opportunities for reducing cost and facilitating timely data collection, visualization, and interpretation for farmers. Therefore, the objective of this study was to develop and test a low-cost IoT system for soil moisture monitoring using Watermark 200SS sensors. The system uses Arduino-based microcontrollers and data from the field sensors (End Nodes) are communicated wirelessly using LoRa radios to a receiver (Coordinator), which connects to the Internet via WiFi and sends the data to an open-source website (ThingSpeak.com) where the data can be visualized and further analyzed using Matlab. The system was successfully tested under field conditions by installing Watermark sensors at four depths in a wheat field. The system described here could contribute to widespread adoption of easy-to-use and affordable moisture sensing technologies among farmers.展开更多
Aiming at the poor location accuracy caused by the harsh and complex underground environment,long strip roadway,limited wireless transmission and sparse anchor nodes,an underground location algorithm based on random f...Aiming at the poor location accuracy caused by the harsh and complex underground environment,long strip roadway,limited wireless transmission and sparse anchor nodes,an underground location algorithm based on random forest and compensation for environmental factors was proposed.Firstly,the underground wireless access point(AP)network model and tunnel environment were analyzed,and the fingerprint location algorithm was built.And then the Received Signal Strength(RSS)was analyzed by Kalman Filter algorithm in the offline sampling and real-time positioning stage.Meanwhile,the target speed constraint condition was introduced to reduce the error caused by environmental factors.The experimental results show that the proposed algorithm solves the problem of insufficient location accuracy and large fluctuation affected by environment when the anchor nodes are sparse.At the same time,the average location accuracy reaches three meters,which can satisfy the application of underground rescue,activity track playback,disaster monitoring and positioning.It has high application value in complex underground environment.展开更多
Many agricultural fields across the country have a high degree of variability in soil type and water holding capacity that affects irrigation management. One way to overcome problems associated with the field variabil...Many agricultural fields across the country have a high degree of variability in soil type and water holding capacity that affects irrigation management. One way to overcome problems associated with the field variability for improving irrigation management is to utilize a site-specific irrigation system. This system applies water to match the needs of individual management zones within a field. A real-time continuous soil moisture measurement is essential for the success of site-specific irrigation systems. Recently the National Aeronautics and Space Administration (NASA) developed sensor technology that records the global positioning system (GPS) signal reflected from the surface of Earth, which estimates the dielectric properties of soil and can be used to estimate soil moisture contents. The overall objective of this study was to determine the feasibility of utilizing GPS-based technology developed by NASA for soil moisture measurements and to determine the influence of soil type, soil compaction, and ground cover on the measurements. The results showed strong positive correlations between soil moisture and reflected signals. Other factors (soil compaction and soil type), were not significantly related to reflectivity and did not significantly change the relationship between reflectivity and soil moisture contents. In addition, ground cover (rye crop) did not significantly reduce reflectivity. Therefore, this system could be used as a real-time and continuous nonintrusive soil moisture sensor for site-specific irrigation scheduling and watershed management.展开更多
Accurate monitoring of soil water status can be an important component of precision irrigation water management. A variety of commercial sensors measure soil water status by relating sensor electrical output to soil w...Accurate monitoring of soil water status can be an important component of precision irrigation water management. A variety of commercial sensors measure soil water status by relating sensor electrical output to soil water content or soil water potential. However, sensor electrical output can also be affected by soil characteristics other than water content, such as soil texture, salinity, and temperature. This makes it difficult to accurately measure and interpret soil water status without prior on-site calibration. In this study, we investigated the impact of soil texture on the response of three types of sensors commonly used to monitor soil water status, including the Decagon EC-5, the Vegetronix VH400, and the Watermark 200ss granular matrix sensor. A replicated laboratory experiment was conducted to evaluate the response of these types of sensors using four major soil textural classes commonly found in South Carolina. We found that the three types of sensors had a significant response to changes in soil water content, but while the EC-5 and VH400 sensors had a linear response, the Watermark 200ss had a curvilinear response that was explained by an exponential decay function. The response of the three sensor types, however, was significantly affected by soil texture, which will significantly affect the trigger point used to initiate irrigation based on the output from these sensors. Therefore, it is suggested that guidelines on how to use these sensors for local soils need to be developed and made available to farmers, so that they can make better irrigation scheduling decisions.展开更多
Using the particle-in-cell simulations,we report an efficient scheme to generate a slow wave structure in the electron density of a plasma waveguide,based on the array laser-plasma interaction.The spatial distribution...Using the particle-in-cell simulations,we report an efficient scheme to generate a slow wave structure in the electron density of a plasma waveguide,based on the array laser-plasma interaction.The spatial distribution of the electron density of the plasma waveguide is modulated via effective control of the super-Gaussian index and array pattern code of the lasers.A complete overview of the holding time,and the bearable laser’s intensity of the electron density structure of the plasma waveguide,is obtained.In addition,the holding time of the slow wave structure of the plasma waveguide is also controlled by adjusting the frequency of the array laser beam.Finally,effects due to ion motion are discussed in detail.展开更多
The spatially modulated electron distribution of plasma is the basis for obtaining programmable electron density patterns.It has an important influence on plasma technology applications.We propose an efficient scheme ...The spatially modulated electron distribution of plasma is the basis for obtaining programmable electron density patterns.It has an important influence on plasma technology applications.We propose an efficient scheme to realize controllable electron density patterns in underdense plasma based on the array laser-plasma interaction.Theoretical evidence for the realization of programmable electron density patterns and the corresponding electrostatic field is provided analytically,which is confirmed by particle-in-cell simulations.Results show that the spatial distribution of electron density in the propagation and transverse directions of the laser can be highly modulated to obtain rich programmable electron density patterns by adjusting the array pattern code and pulse width of the array laser beam.展开更多
The development of a (layer of) thatch in turfgrass causes important changes to near-surface eco-hydrological processes. In this study, we investigated the effects of turfgrass thatch, specifically Kentucky bluegrass ...The development of a (layer of) thatch in turfgrass causes important changes to near-surface eco-hydrological processes. In this study, we investigated the effects of turfgrass thatch, specifically Kentucky bluegrass (Poa pratensis L.) and red fescue (Festuca rubra L.) on water infiltration, surface runoff, and soil moisture evaporation. The thatches were collected from the field for controlled experiments using packed soil columns under various rainfall conditions. Results indicated that the presence of thatch delayed the onset of infiltration compared with situations without a thatch at the soil surface. Infiltration was delayed for a longer period in thicker red fescue thatch than thinner Kentucky bluegrass thatch. The presence of a thatch reduced runoff by holding more water locally during the rainfall period and allowing a longer period of time for infiltration. Additionally, evaporative water loss was reduced with the presence of thatch than that of bare soil. Our results highlight that the presence of thatch changes the near-surface hydrological processes, which may help improve turf management practices in terms of thatch control and irrigation scheduling.展开更多
基金This work has been supported by the National Key Research and Development Program of China(2018YFD1000300)the National Science Foundation of China(31872070,32072538),Fundamental Research Funds for the Central Universities(JCQY201901)+1 种基金the Earmarked Fund for China Agriculture Research System(CARS-28)the Jiangsu Agriculture Science and Technology Innovation Fund(SCX(22)3215).Bioinformatic analysis was supported by the Bioinformatics Center of Nanjing Agricultural University.We also thank Dr Jianming Zeng(University of Macao),and all the members of his bioinformatics team,biotrainee,for generously sharing their experience and codes.
文摘Pear ring rot,caused by the pathogenic fungi Botryosphaeria dothidea,seriously affects pear production.While the infection-induced reactive oxygen species(ROS)burst of infected plants limits the proliferation of B.dothidea during the early infection stage,high ROS levels can also contribute to their growth during the later necrotrophic infection stage.Therefore,it is important to understand how plants balance ROS levels and resistance to pathogenic B.dothidea during the later stage.In this study,we identified PbrChiA,a glycosyl hydrolases 18(GH18)chitinase-encoding gene with high infection-induced expression,through a comparative transcriptome analysis.Artificial substitution,stable overexpression,and virus induced gene silencing(VIGS)experiments demonstrated that PbrChiA can positively regulate pear resistance as a secreted chitinase to break down B.dothidea mycelium in vitro and that overexpression of PbrChiA suppressed infection-induced ROS accumulation.Further analysis revealed that PbrChiA can bind to the ectodomain of PbrLYK1b2,and this interaction suppressed PbrLYK1b2-mediated chitin-induced ROS accumulation.Collectively,we propose that the combination of higher antifungal activity from abundant PbrChiA and lower ROS levels during later necrotrophic infection stage confer resistance of pear against B.dothidea.
文摘Accurate soil moisture content measurements are vital to precision irrigation management. Remote sensing using the microwave spectrum (such as GPS signals) has been used for measuring large area soil moisture contents. In our previous work, we estimated surface soil moisture contents for bare soil using a GPS Delay Mapping Receiver (DMR) developed by NASA. However, the effect of vegetation was not considered in these studies. Hence the objectives of this study were to: 1) investigate the feasibility of using DMR to determine soil moisture content in cotton production fields;2) evaluate the attenuation effect of vegetation (cotton) on reflected GPS signal. Field experiments were conducted during the 2013 and 2014 growing seasons in South Carolina. GPS antennas were mounted at three heights (1.6, 2.7, and 4.2 m) over cotton fields to measure reflected GPS signals (DMR readings). DMR readings, soil core samples, and plant measurements were collected about once a week and attenuation effect of plant canopy was calculated. Results showed that DMR was able to detect soil moisture changes within one week after precipitation events that were larger than 25 mm per day. However, the DMR readings were poorly correlated with soil volumetric water content during dry periods. Attenuation effect of plant canopy was not significant. For irrigation purpose, the results suggested that the sensitivity of reflected GPS signals to soil moisture changes needed to be further studied before this technology could be utilized for irrigation scheduling in cotton production. Refinement of this technology will expand the use of advanced remote sensing technology for site-specific and timely irrigation scheduling. This would eliminate the need to install moisture sensors in production fields, which can interfere with farming operations and increase production costs.
基金supported by the National Natural Science Foundation of China(31830081,31772276,31471839)the Earmarked Fund for China Agriculture Research System(CARS-28).
文摘Genome fractionation(also known as diploidization)frequently occurs following paleopolyploidization events.Biased fractionation between subgenomes has been found in some paleo-allopolyploids,while this phenomenon is absent in paleo-autopolyploids.Pear(Pyrus bretschneideri Rehd.)experienced a recent whole-genome duplication(WGD,~30 million years ago);however,the evolutionary fate of the two subgenomes derived from this WGD event is not clear.In this study,we identified the two paleo-subgenomes in pear using peach(Prunus persica)as an outgroup and investigated differences in the gene loss rate,evolutionary rate,gene expression level,and DNA methylation level between these two subgenomes.Fractionation bias was not found between the two pear subgenomes,which evolved at similar evolutionary rates.The DNA methylation level of the two subgenomes showed little bias,and we found no expression dominance between the subgenomes.However,we found that singleton genes and homeologous genes within each subgenome showed divergent evolutionary patterns of selective constraints,expression and epigenetic modification.These results provide insights into subgenome evolution following paleopolyploidization in pear.
文摘Soil moisture monitoring is one of the methods that farmers can use for irrigation scheduling. Many sensor types and data logging systems have been developed for this purpose over the years, but their widespread adoption in practical irrigation scheduling is still limited due to a variety of factors. Important factors limiting adoption of soil moisture sensing technology by farmers include high cost and difficulties in timely data collection and interpretation. Recent developments in open source microcontrollers (such as Arduino), wireless communication, and Internet-of-Things (IoT) technologies offer opportunities for reducing cost and facilitating timely data collection, visualization, and interpretation for farmers. Therefore, the objective of this study was to develop and test a low-cost IoT system for soil moisture monitoring using Watermark 200SS sensors. The system uses Arduino-based microcontrollers and data from the field sensors (End Nodes) are communicated wirelessly using LoRa radios to a receiver (Coordinator), which connects to the Internet via WiFi and sends the data to an open-source website (ThingSpeak.com) where the data can be visualized and further analyzed using Matlab. The system was successfully tested under field conditions by installing Watermark sensors at four depths in a wheat field. The system described here could contribute to widespread adoption of easy-to-use and affordable moisture sensing technologies among farmers.
基金The work was supported by Projects of Natural Science Foundational in Higher Education Institutions of Anhui Province(KJ2017A449)Chaohu University’s Innovation and Entrepreneurship Training Program for Provincial College Students in 2019(No.S201910380042)。
文摘Aiming at the poor location accuracy caused by the harsh and complex underground environment,long strip roadway,limited wireless transmission and sparse anchor nodes,an underground location algorithm based on random forest and compensation for environmental factors was proposed.Firstly,the underground wireless access point(AP)network model and tunnel environment were analyzed,and the fingerprint location algorithm was built.And then the Received Signal Strength(RSS)was analyzed by Kalman Filter algorithm in the offline sampling and real-time positioning stage.Meanwhile,the target speed constraint condition was introduced to reduce the error caused by environmental factors.The experimental results show that the proposed algorithm solves the problem of insufficient location accuracy and large fluctuation affected by environment when the anchor nodes are sparse.At the same time,the average location accuracy reaches three meters,which can satisfy the application of underground rescue,activity track playback,disaster monitoring and positioning.It has high application value in complex underground environment.
文摘Many agricultural fields across the country have a high degree of variability in soil type and water holding capacity that affects irrigation management. One way to overcome problems associated with the field variability for improving irrigation management is to utilize a site-specific irrigation system. This system applies water to match the needs of individual management zones within a field. A real-time continuous soil moisture measurement is essential for the success of site-specific irrigation systems. Recently the National Aeronautics and Space Administration (NASA) developed sensor technology that records the global positioning system (GPS) signal reflected from the surface of Earth, which estimates the dielectric properties of soil and can be used to estimate soil moisture contents. The overall objective of this study was to determine the feasibility of utilizing GPS-based technology developed by NASA for soil moisture measurements and to determine the influence of soil type, soil compaction, and ground cover on the measurements. The results showed strong positive correlations between soil moisture and reflected signals. Other factors (soil compaction and soil type), were not significantly related to reflectivity and did not significantly change the relationship between reflectivity and soil moisture contents. In addition, ground cover (rye crop) did not significantly reduce reflectivity. Therefore, this system could be used as a real-time and continuous nonintrusive soil moisture sensor for site-specific irrigation scheduling and watershed management.
文摘Accurate monitoring of soil water status can be an important component of precision irrigation water management. A variety of commercial sensors measure soil water status by relating sensor electrical output to soil water content or soil water potential. However, sensor electrical output can also be affected by soil characteristics other than water content, such as soil texture, salinity, and temperature. This makes it difficult to accurately measure and interpret soil water status without prior on-site calibration. In this study, we investigated the impact of soil texture on the response of three types of sensors commonly used to monitor soil water status, including the Decagon EC-5, the Vegetronix VH400, and the Watermark 200ss granular matrix sensor. A replicated laboratory experiment was conducted to evaluate the response of these types of sensors using four major soil textural classes commonly found in South Carolina. We found that the three types of sensors had a significant response to changes in soil water content, but while the EC-5 and VH400 sensors had a linear response, the Watermark 200ss had a curvilinear response that was explained by an exponential decay function. The response of the three sensor types, however, was significantly affected by soil texture, which will significantly affect the trigger point used to initiate irrigation based on the output from these sensors. Therefore, it is suggested that guidelines on how to use these sensors for local soils need to be developed and made available to farmers, so that they can make better irrigation scheduling decisions.
基金the National Natural Science Foundation of China(Grant Nos.11865014,11765017,11764039,11475027,1127425511305132)+1 种基金the Natural Science Foundation of Gansu Province(Grant No.17JR5RA076)the Scientific Research Project of Gansu Higher Education(Grant No.2016A-005)。
文摘Using the particle-in-cell simulations,we report an efficient scheme to generate a slow wave structure in the electron density of a plasma waveguide,based on the array laser-plasma interaction.The spatial distribution of the electron density of the plasma waveguide is modulated via effective control of the super-Gaussian index and array pattern code of the lasers.A complete overview of the holding time,and the bearable laser’s intensity of the electron density structure of the plasma waveguide,is obtained.In addition,the holding time of the slow wave structure of the plasma waveguide is also controlled by adjusting the frequency of the array laser beam.Finally,effects due to ion motion are discussed in detail.
基金supported by National Natural Science Foundation of China(Nos.11865014,11765017,11764039,11475027,11274255,and 11305132)the Natural Science Foundation of Gansu Province(No.17JR5RA076)by the Scientific Research Project of Gansu Higher Education(No.2016A-005)。
文摘The spatially modulated electron distribution of plasma is the basis for obtaining programmable electron density patterns.It has an important influence on plasma technology applications.We propose an efficient scheme to realize controllable electron density patterns in underdense plasma based on the array laser-plasma interaction.Theoretical evidence for the realization of programmable electron density patterns and the corresponding electrostatic field is provided analytically,which is confirmed by particle-in-cell simulations.Results show that the spatial distribution of electron density in the propagation and transverse directions of the laser can be highly modulated to obtain rich programmable electron density patterns by adjusting the array pattern code and pulse width of the array laser beam.
文摘The development of a (layer of) thatch in turfgrass causes important changes to near-surface eco-hydrological processes. In this study, we investigated the effects of turfgrass thatch, specifically Kentucky bluegrass (Poa pratensis L.) and red fescue (Festuca rubra L.) on water infiltration, surface runoff, and soil moisture evaporation. The thatches were collected from the field for controlled experiments using packed soil columns under various rainfall conditions. Results indicated that the presence of thatch delayed the onset of infiltration compared with situations without a thatch at the soil surface. Infiltration was delayed for a longer period in thicker red fescue thatch than thinner Kentucky bluegrass thatch. The presence of a thatch reduced runoff by holding more water locally during the rainfall period and allowing a longer period of time for infiltration. Additionally, evaporative water loss was reduced with the presence of thatch than that of bare soil. Our results highlight that the presence of thatch changes the near-surface hydrological processes, which may help improve turf management practices in terms of thatch control and irrigation scheduling.