Traumatic brain injury results in neuronal loss and glial scar formation.Replenishing neurons and eliminating the consequences of glial scar formation are essential for treating traumatic brain injury.Neuronal reprogr...Traumatic brain injury results in neuronal loss and glial scar formation.Replenishing neurons and eliminating the consequences of glial scar formation are essential for treating traumatic brain injury.Neuronal reprogramming is a promising strategy to convert glial scars to neural tissue.However,previous studies have reported inconsistent results.In this study,an AAV9P1 vector incorporating an astrocyte-targeting P1 peptide and glial fibrillary acidic protein promoter was used to achieve dual-targeting of astrocytes and the glial scar while minimizing off-target effects.The results demonstrate that AAV9P1 provides high selectivity of astrocytes and reactive astrocytes.Moreover,neuronal reprogramming was induced by downregulating the polypyrimidine tract-binding protein 1 gene via systemic administration of AAV9P1 in a mouse model of traumatic brain injury.In summary,this approach provides an improved gene delivery vehicle to study neuronal programming and evidence of its applications for traumatic brain injury.展开更多
This paper intends to give a code about atmospheric propagation effects affecting terahertz (THz) communication system. The main focus is on attenuation caused by atmospheric gases with the radiation transmission theo...This paper intends to give a code about atmospheric propagation effects affecting terahertz (THz) communication system. The main focus is on attenuation caused by atmospheric gases with the radiation transmission theory and the empirical continuum absorption based on the HITRAN database. Theoretical aspects about them are presented, emphasizing on those which deserve special attention as frequency increases. Laboratory measurements of the absorption spectra of laboratory air and major atmospheric gases mixed with water vapor in the 250 - 350 GHz frequency range at atmospheric pressure and room temperature on a basis of backward wave oscillators (BWOs) are obtained. The results of experiments are compared with the calculations. It is found that the water vapor transmittance is greater than the calculation. Data of these measurements agree with the results of analysis of atmospheric spectra with in statistical accuracy of experiments. Accurate measurements are also needed for further studies of the physics of the molecules and their interactions. The investigation makes it significant for enhancing accuracy of models of radiation propagation in the atmosphere.展开更多
In this report,the microstructure,mechanical properties,and textures of warm rolled interstitial-free steel annealed at four different temperatures(730,760,790,and 820°C)were studied.The overall structural featur...In this report,the microstructure,mechanical properties,and textures of warm rolled interstitial-free steel annealed at four different temperatures(730,760,790,and 820°C)were studied.The overall structural features of specimens were investigated by optical microscopy,and the textures were measured by X-ray diffraction(XRD).Nano-sized precipitates were then observed by a transmission electron microscope(TEM)on carbon extraction replicas.According to the results,with increased annealing temperatures,the ferrite grains grew;in addition,the sizes of Ti_4C_2S_2 and Ti C precipitates also increased.Additionally,the sizes of Ti N and Ti S precipitates slightly changed.When the annealing temperature increased from 730 to 820°C,the yield strength(YS)and the ultimate tensile strength(UTS)showed a decreasing trend.Meanwhile,elongation and the strain harden exponent(n value)increased to 49.6%and 0.34,respectively.By comparing textures annealed at different temperatures,the intensity of{111}texture annealed at 820°C was the largest,while the difference between the intensity of{111}<110>and{111}<112>was the smallest when the annealing temperature was 820°C.Therefore,the plastic strain ratio(r value)annealed at 820°C was the highest.展开更多
Using first-principle calculations,we investigate the mechanical,structural,and electronic properties and formation energy of 25 kinds ofⅢ-Ⅴ binary monolayers in detail.A relative radius of the binary compound accor...Using first-principle calculations,we investigate the mechanical,structural,and electronic properties and formation energy of 25 kinds ofⅢ-Ⅴ binary monolayers in detail.A relative radius of the binary compound according to the atomic number in the periodic table is defined,and based on the definition,the 25 kinds ofⅢ-Ⅴ binary compounds are exactly located at a symmetric position in a symmetric matrix.The mechanical properties and band gaps are found to be very dependent on relative radius,while the effective mass of holes and electrons are found to be less dependent.A linear function between Young’s modulus and formation energy is fitted with a linear relation in this paper.The change regularity of physical properties of B-Ⅴ(Ⅴ=P,As,Sb,Bi)andⅢ-N(Ⅲ=Al,Ga,In,Tl)are found to be very different from those of otherⅢ-Ⅴ binary compounds.展开更多
Geological penetrating radar combined with drilling and chemical analysis has been applied to investigate leakage pollution of Longpan Road gas station in Nanjing, China. The results indicate that radar images show st...Geological penetrating radar combined with drilling and chemical analysis has been applied to investigate leakage pollution of Longpan Road gas station in Nanjing, China. The results indicate that radar images show strong reflection anomalies along the northeast to the gas station, characterized by contaminants or contaminant plumes spreading downstream and below. The drilling results confirmed the contents of monocyclic and polycyclic aromatic hydrocarbons contained in the layers of fine sands ranging from 0.60 m to 6.0 m beneath the surface mostly exceed Chinese standard severely, such as toluene and isobutylbenzene with high content at 2738 μg/kg and 64505 μg/kg, respectively. Therefore, it is considered that geological penetrating radar can be employed to investigate leakage contamination of gas stations, and remediation and administration should be conducted in the polluted soil layers and aquifers.展开更多
Examining the descriptions of piezometric heads at two points in both the salt water and fresh water zones reveals that when the groundwater flow system is in steady state and satisfies the Dupuit assumption, the loca...Examining the descriptions of piezometric heads at two points in both the salt water and fresh water zones reveals that when the groundwater flow system is in steady state and satisfies the Dupuit assumption, the location of the fresh water-salt water interface in a homogeneous, isotropic, and unconfined coastal aquifer can be estimated based on a piezometric head of fresh water at a point in the fresh water zone (from the water table to the interface) vertically lined up with a piezometric head of salt water at a point in the salt water zone (from the interface down). Research shows that the new method is a general relation and that both the Hubbert relation describing the location of the interface and the Ghy- ben--Herzberg relation are special cases of this method. The method requires two piezometric wells to be close to each other and each tapping into a different zone. Measurements of piezometric heads at a well cluster consisting of piezometric wells tapping separately into fresh water and salt water zones near Beihai, China at 5-day intervals for 15 months are used to illustrate the estimation of interface location. The depth of the interface for well H5 ranges from 32 to 72 m below the sea level.展开更多
[Objectives]The action mechanism of Tingli Dazao Xiefei Decoction in the treatment of COPD was explored by the network pharmacology and molecular docking technology.[Methods]The TCMSP database was used to perform acti...[Objectives]The action mechanism of Tingli Dazao Xiefei Decoction in the treatment of COPD was explored by the network pharmacology and molecular docking technology.[Methods]The TCMSP database was used to perform active ingredient screening and target prediction on Chinese medicines contained in Tingli Dazao Xiefei Decoction,and COPD-related targets were searched through disease databases.Common targets of Tingli Dazao Xiefei Decoction and COPD were imported into Metascape database for GO analysis and KEGG pathway enrichment analysis.The STRING database was used to perform PPI analysis on common targets,and core targets were screened through the Cytoscape software.The Pymol,AutoDockTools,Vina and other software were used for molecular docking of some core targets and ingredients.[Results]From Tingli Dazao Xiefei Decoction,26 active ingredients which shared 211 common targets and 22 core targets with COPD,were screened out.Enrichment analysis revealed a total of 1892 biological processes,78 cell components,152 molecular functions,and 164 signal paths.The molecular docking of part of the core targets and corresponding ingredients obtained better results.[Conclusions]Tingli Dazao Xiefei Decoction treats COPD through multiple targets and multiple pathways,revealing its mechanism for treating COPD.展开更多
CircRNAs,a novel type of endogenous non-coding RNAs(ncRNAs),are typically produced by back-splicing from exons of protein-coding genes,which are characterized by a covalently closed structure with neither 5'to 3...CircRNAs,a novel type of endogenous non-coding RNAs(ncRNAs),are typically produced by back-splicing from exons of protein-coding genes,which are characterized by a covalently closed structure with neither 5'to 3'polarity nor a poly(A)tail.'On the one hand,circRNAs are involved in the regulation of a variety of important biological processes,such as apoptosis,proliferation,migration,and inflammatory responses.'On the other hand,the relationship between circRNAs and several fibrotic diseases has been reported.2 However.展开更多
The presence of anticancer clerodane diterpenoids is a chemotaxonomic marker for the traditional Chinese medicinal plant Scutellaria barbata,although the molecular mechanisms behind clerodane biosynthesis are unknown....The presence of anticancer clerodane diterpenoids is a chemotaxonomic marker for the traditional Chinese medicinal plant Scutellaria barbata,although the molecular mechanisms behind clerodane biosynthesis are unknown.Here,we report a high-quality assembly of the 414.98 Mb genome of S.barbata into 13 pseudochromosomes.Using phylogenomic and biochemical data,we mapped the plastidial metabolism of kaurene(gibberellins),abietane,and clerodane diterpenes in three species of the family Lamiaceae(Scutellaria barbata,Scutellaria baicalensis,and Salvia splendens),facilitating the identification of genes involved in the biosynthesis of the clerodanes,kolavenol,and isokolavenol.We show that clerodane biosynthesis evolved through recruitment and neofunctionalization of genes from gibberellin and abietane metabolism.Despite the assumed monophyletic origin of clerodane biosynthesis,which is widespread in species of the Lamiaceae,our data show distinct evolutionary lineages and suggest polyphyletic origins of clerodane biosynthesis in the family Lamiaceae.Our study not only provides significant insights into the evolution of clerodane biosynthetic pathways in the mint family,Lamiaceae,but also will facilitate the production of anticancer clerodanes through future metabolic engineering efforts.展开更多
Non-coding variants in the human genome significantly influence human traits and complex diseases via their regulation and modification effects.Hence,an increasing number of computational methods are developed to pred...Non-coding variants in the human genome significantly influence human traits and complex diseases via their regulation and modification effects.Hence,an increasing number of computational methods are developed to predict the effects of variants in human non-coding sequences.However,it is difficult for inexperienced users to select appropriate computational methods from dozens of available methods.To solve this issue,we assessed 12 performance metrics of 24 methods on four independent non-coding variant benchmark datasets:(1)rare germline variants from clinical relevant sequence variants(ClinVar),(2)rare somatic variants from Catalogue Of Somatic Mutations In Cancer(COSMIC),(3)common regulatory variants from curated expression quantitative trait locus(eQTL)data,and(4)disease-associated common variants from curated genomewide association studies(GWAS).All 24 tested methods performed differently under various conditions,indicating varying strengths and weaknesses under different scenarios.Importantly,the performance of existing methods was acceptable for rare germline variants from ClinVar with the area under the receiver operating characteristic curve(AUROC)of 0.4481–0.8033 and poor for rare somatic variants from COSMIC(AUROC=0.4984–0.7131),common regulatory variants from curated eQTL data(AUROC=0.4837–0.6472),and disease-associated common variants from curated GWAS(AUROC=0.4766–0.5188).We also compared the prediction performance of 24 methods for non-coding de novo mutations in autism spectrum disorder,and found that the combined annotation-dependent depletion(CADD)and context-dependent tolerance score(CDTS)methods showed better performance.Summarily,we assessed the performance of 24 computational methods under diverse scenarios,providing preliminary advice for proper tool selection and guiding the development of new techniques in interpreting non-coding variants.展开更多
In this paper, by using multivariate divided differences to approximate the partial derivative and superposition, we extend the multivariate quasi-interpolation scheme based on dimension-splitting technique which can ...In this paper, by using multivariate divided differences to approximate the partial derivative and superposition, we extend the multivariate quasi-interpolation scheme based on dimension-splitting technique which can reproduce linear polynomials to the scheme quadric polynomials. Furthermore, we give the approximation error of the modified scheme. Our multivariate multiquadric quasi-interpolation scheme only requires information of lo- cation points but not that of the derivatives of approximated function. Finally, numerical experiments demonstrate that the approximation rate of our scheme is significantly im- proved which is consistent with the theoretical results.展开更多
The coal and biomass coupling power genera-tion technology is considered as a promising technology for energy conservation and emission reduction.In this paper,a novel coal and biomass indirect coupling system is prop...The coal and biomass coupling power genera-tion technology is considered as a promising technology for energy conservation and emission reduction.In this paper,a novel coal and biomass indirect coupling system is proposed based on the technology of biomass gasification and co-combustion of coal and gasification gas.For the sake of comparison,a coal and biomass direct coupling system is also introduced based on the technology of co-combustion of coal and biomass.The process of the direct and the indirect coupling system is simulated.The thermodynamic and economic performances of two systems are analyzed and compared.The simulation indicates that the thermodynamic performance of the indirect coupling system is slightly worse,but the economic performance is better than that of the direct coupling system.When the blending ratio of biomass is 20%,the energy and exergy fficiencies of the indirect coupling system are 42.70%and 41.14%,the intemal rate of returm(IRR)and discounted payback period(DPP)of the system are 25.68%and 8.56 years.The price fluctuation of fuels and products has a great influence on the economic performance of the indirect coupling system.The environmental impact analysis indicates that the indirect coupling system can inhibit the propagation of NOx and reduce the environmental cost.展开更多
We demonstrate high-resolution and high-quality terahertz(THz)in-line digital holography based on the synthetic aperture method.The setup is built on a self-developed THz quantum cascade laser,and a lateral resolution...We demonstrate high-resolution and high-quality terahertz(THz)in-line digital holography based on the synthetic aperture method.The setup is built on a self-developed THz quantum cascade laser,and a lateral resolution better than 70μm(~λ)is achieved at 4.3 THz.To correct intensity differences between sub-holograms before aperture stitching,a practical algorithm with global optimization is proposed.To address the twin-image problem for in-line holography,a sparsity-based phase retrieval algorithm is applied to perform the high-quality reconstruction.Furthermore,a new autofocusing criterion termed"reconstruction objective function"is introduced to obtain the best in-focus reconstruction distance,so the autofocusing procedure and the reconstruction are unified within the same framework.Both simulation and experiment prove its accuracy and robustness.Note that all the methods proposed here can be applied to other wavebands as well.We demonstrate the success of this THz synthetic aperture in-line holography on biological and semiconductor samples,showing its potential applications in bioimaging and materials analysis.展开更多
Texture is a pivotal factor for the deep drawability of interstitial free steel (IF steel). The evolution of microstructure and recrystallization texture of Ti-IF steel through the processing of hot rolling, cold roll...Texture is a pivotal factor for the deep drawability of interstitial free steel (IF steel). The evolution of microstructure and recrystallization texture of Ti-IF steel through the processing of hot rolling, cold rolling and annealing have been studied. The mechanical properties including strain hardening index n and plastic strain ratio r are also measured. For comparison, ferrite rolling and austenite rolling are both studied. The results show that the intensity of γ-fiber after ferrite rolling is higher than that after austenite rolling. The great balance between the {111}〈110〉 and {111}〈112〉 leads to low △r value after annealing. The size of precipitates in ferrite rolled sample is generally larger than that in austenite rolled sample. Compared to austenite rolled sample, the ferrite rolled and annealed one has better formability and its r value reaches 2.36. Different from laboratory production, the test steels were acquired from industrial trial, and all the result can be used in industrial production directly.展开更多
Knots are discovered in biophysical systems,such as DNA and proteins.Knotted portions in knotted DNA are significantly bent and their corresponding bending angles are comparable with or larger than the sharp bending a...Knots are discovered in biophysical systems,such as DNA and proteins.Knotted portions in knotted DNA are significantly bent and their corresponding bending angles are comparable with or larger than the sharp bending angle resulting in flexible defects.The role of flexible defects in the interplay of supercoiling and knotting of circular DNA were predicted by a Monte Carlo simulation.In knotted DNA with a particular knot type,a flexible defect noticeably enhances the supercoiling of the knotted DNA and the decreasing excitation energy makes the knotted portion more compact.A reduction in twist rigidity and unwinding of flexible defects are incorporated into the numerical simulations,so that interplay of supercoiling and knotting of circular DNA is studied under torsional conditions.Increasing unwinding not only results in a wider linking number distribution,but also leads to a drift of the distribution to lower values.A flexible defect has obvious effects on knotting probability.The summation of equilibrium distribution probability for nontrivial knotted DNA with different contour length does not change with excitation energy monotonically and has a maximum at an intermediate value of excitation energy around 5 kBT.In the phase space of knot length and gyration radius of knotted DNA,knot length does not anticorrelate with its gyration radius,which is attributed to the flexible defect in the knotted portion,which leads to the release of bending energy and inhibited the competition between entropy and bending energy.展开更多
基金supported by the National Natural Science Foundation of China,No.82073783(to YY)the Natural Science Foundation of Beijing,No.7212160(to YY).
文摘Traumatic brain injury results in neuronal loss and glial scar formation.Replenishing neurons and eliminating the consequences of glial scar formation are essential for treating traumatic brain injury.Neuronal reprogramming is a promising strategy to convert glial scars to neural tissue.However,previous studies have reported inconsistent results.In this study,an AAV9P1 vector incorporating an astrocyte-targeting P1 peptide and glial fibrillary acidic protein promoter was used to achieve dual-targeting of astrocytes and the glial scar while minimizing off-target effects.The results demonstrate that AAV9P1 provides high selectivity of astrocytes and reactive astrocytes.Moreover,neuronal reprogramming was induced by downregulating the polypyrimidine tract-binding protein 1 gene via systemic administration of AAV9P1 in a mouse model of traumatic brain injury.In summary,this approach provides an improved gene delivery vehicle to study neuronal programming and evidence of its applications for traumatic brain injury.
文摘This paper intends to give a code about atmospheric propagation effects affecting terahertz (THz) communication system. The main focus is on attenuation caused by atmospheric gases with the radiation transmission theory and the empirical continuum absorption based on the HITRAN database. Theoretical aspects about them are presented, emphasizing on those which deserve special attention as frequency increases. Laboratory measurements of the absorption spectra of laboratory air and major atmospheric gases mixed with water vapor in the 250 - 350 GHz frequency range at atmospheric pressure and room temperature on a basis of backward wave oscillators (BWOs) are obtained. The results of experiments are compared with the calculations. It is found that the water vapor transmittance is greater than the calculation. Data of these measurements agree with the results of analysis of atmospheric spectra with in statistical accuracy of experiments. Accurate measurements are also needed for further studies of the physics of the molecules and their interactions. The investigation makes it significant for enhancing accuracy of models of radiation propagation in the atmosphere.
文摘In this report,the microstructure,mechanical properties,and textures of warm rolled interstitial-free steel annealed at four different temperatures(730,760,790,and 820°C)were studied.The overall structural features of specimens were investigated by optical microscopy,and the textures were measured by X-ray diffraction(XRD).Nano-sized precipitates were then observed by a transmission electron microscope(TEM)on carbon extraction replicas.According to the results,with increased annealing temperatures,the ferrite grains grew;in addition,the sizes of Ti_4C_2S_2 and Ti C precipitates also increased.Additionally,the sizes of Ti N and Ti S precipitates slightly changed.When the annealing temperature increased from 730 to 820°C,the yield strength(YS)and the ultimate tensile strength(UTS)showed a decreasing trend.Meanwhile,elongation and the strain harden exponent(n value)increased to 49.6%and 0.34,respectively.By comparing textures annealed at different temperatures,the intensity of{111}texture annealed at 820°C was the largest,while the difference between the intensity of{111}<110>and{111}<112>was the smallest when the annealing temperature was 820°C.Therefore,the plastic strain ratio(r value)annealed at 820°C was the highest.
基金Project supported by the National Natural Science Foundation of China(Grant Nos.61564002 and 11664005)the Guizhou Normal University Innovation and Entrepreneurship Education Research Center Foundation(Grant No.0418010)the Joint Foundation of Guizhou Normal University(Grant No.7341)
文摘Using first-principle calculations,we investigate the mechanical,structural,and electronic properties and formation energy of 25 kinds ofⅢ-Ⅴ binary monolayers in detail.A relative radius of the binary compound according to the atomic number in the periodic table is defined,and based on the definition,the 25 kinds ofⅢ-Ⅴ binary compounds are exactly located at a symmetric position in a symmetric matrix.The mechanical properties and band gaps are found to be very dependent on relative radius,while the effective mass of holes and electrons are found to be less dependent.A linear function between Young’s modulus and formation energy is fitted with a linear relation in this paper.The change regularity of physical properties of B-Ⅴ(Ⅴ=P,As,Sb,Bi)andⅢ-N(Ⅲ=Al,Ga,In,Tl)are found to be very different from those of otherⅢ-Ⅴ binary compounds.
文摘Geological penetrating radar combined with drilling and chemical analysis has been applied to investigate leakage pollution of Longpan Road gas station in Nanjing, China. The results indicate that radar images show strong reflection anomalies along the northeast to the gas station, characterized by contaminants or contaminant plumes spreading downstream and below. The drilling results confirmed the contents of monocyclic and polycyclic aromatic hydrocarbons contained in the layers of fine sands ranging from 0.60 m to 6.0 m beneath the surface mostly exceed Chinese standard severely, such as toluene and isobutylbenzene with high content at 2738 μg/kg and 64505 μg/kg, respectively. Therefore, it is considered that geological penetrating radar can be employed to investigate leakage contamination of gas stations, and remediation and administration should be conducted in the polluted soil layers and aquifers.
基金supported by the Fund for the Special Research of Doctorate Subjects of the Ministry of Education of China (No.20070491522)
文摘Examining the descriptions of piezometric heads at two points in both the salt water and fresh water zones reveals that when the groundwater flow system is in steady state and satisfies the Dupuit assumption, the location of the fresh water-salt water interface in a homogeneous, isotropic, and unconfined coastal aquifer can be estimated based on a piezometric head of fresh water at a point in the fresh water zone (from the water table to the interface) vertically lined up with a piezometric head of salt water at a point in the salt water zone (from the interface down). Research shows that the new method is a general relation and that both the Hubbert relation describing the location of the interface and the Ghy- ben--Herzberg relation are special cases of this method. The method requires two piezometric wells to be close to each other and each tapping into a different zone. Measurements of piezometric heads at a well cluster consisting of piezometric wells tapping separately into fresh water and salt water zones near Beihai, China at 5-day intervals for 15 months are used to illustrate the estimation of interface location. The depth of the interface for well H5 ranges from 32 to 72 m below the sea level.
文摘[Objectives]The action mechanism of Tingli Dazao Xiefei Decoction in the treatment of COPD was explored by the network pharmacology and molecular docking technology.[Methods]The TCMSP database was used to perform active ingredient screening and target prediction on Chinese medicines contained in Tingli Dazao Xiefei Decoction,and COPD-related targets were searched through disease databases.Common targets of Tingli Dazao Xiefei Decoction and COPD were imported into Metascape database for GO analysis and KEGG pathway enrichment analysis.The STRING database was used to perform PPI analysis on common targets,and core targets were screened through the Cytoscape software.The Pymol,AutoDockTools,Vina and other software were used for molecular docking of some core targets and ingredients.[Results]From Tingli Dazao Xiefei Decoction,26 active ingredients which shared 211 common targets and 22 core targets with COPD,were screened out.Enrichment analysis revealed a total of 1892 biological processes,78 cell components,152 molecular functions,and 164 signal paths.The molecular docking of part of the core targets and corresponding ingredients obtained better results.[Conclusions]Tingli Dazao Xiefei Decoction treats COPD through multiple targets and multiple pathways,revealing its mechanism for treating COPD.
基金supported by grants from the National Nature Science Foundation of China(No.82070791,81670690,81470991,81200492 to N.L.No.82070700,81830021 to S.Z.)+7 种基金the Shanghai Scientific Committee of China(No.20ZR1445800,23ZR1452200,13PJ1406900to N.L.)the Outstanding Leaders Training Program of Pudong Health Bureau of Shanghai,China(No.PWR12021-02 to N.L.)the Shanghai Health Bureau and Shanghai Administration of Traditional Chinese Medicine of China(No.ZHYY-ZXYJHZX-202114 to N.L.)the Project of Pudong Health Bureau of Shanghai,China(No.PW2021D-04,PWZxk2022-05,PWZxk2017-05 to N.L.)the Clinical Investigation Grant of Shanghai East Hospital,Shanghai,China(No.DFLC2022016 to N.L.)the Shanghai Sailing Program(China)(No.23YF1434700 to Y.s.)the China Postdoctoral Science Foundation(No.2021M692436 to Y.S.)the Branch Grantof NationaKl ey R&D Programof China(No.2018YFA0108802 to S.Z.).
文摘CircRNAs,a novel type of endogenous non-coding RNAs(ncRNAs),are typically produced by back-splicing from exons of protein-coding genes,which are characterized by a covalently closed structure with neither 5'to 3'polarity nor a poly(A)tail.'On the one hand,circRNAs are involved in the regulation of a variety of important biological processes,such as apoptosis,proliferation,migration,and inflammatory responses.'On the other hand,the relationship between circRNAs and several fibrotic diseases has been reported.2 However.
基金the Royal Society for the Newton Advanced Fellowship awarded to E.C.T.(NAF\R2\192001)and CEPAMS Funding(Project CPM19)for support of the collaboration project‘‘Scutellaria Anticancer Metabolites’’for C.M.and E.C.T.C.M.was also supported by the Institute Strategic Programme‘‘Molecules from Nature’’(BB/P012523/1)from the UK Biotechnology and Biological Sciences Research Council.E.C.T.was also supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(XDB27020204)International Partnership Program of Chinese Academy of Sciences(153D31KYSB 20160074)Ministry of Science and Technology for Foreign Expert Project 2019(G20190113016),the Science and Technology Commission of Shanghai Municipality for Shanghai Talent Recruitment Programs.A.L.M.M.was supported by the CAS PIFI Fellowship and the China Postdoctoral Science Foundation for Postdoctoral International Exchange Program Fellowship.H.L.is supported by the National Natural Science Foundation of China through Young Scientists Fund(32200313).
文摘The presence of anticancer clerodane diterpenoids is a chemotaxonomic marker for the traditional Chinese medicinal plant Scutellaria barbata,although the molecular mechanisms behind clerodane biosynthesis are unknown.Here,we report a high-quality assembly of the 414.98 Mb genome of S.barbata into 13 pseudochromosomes.Using phylogenomic and biochemical data,we mapped the plastidial metabolism of kaurene(gibberellins),abietane,and clerodane diterpenes in three species of the family Lamiaceae(Scutellaria barbata,Scutellaria baicalensis,and Salvia splendens),facilitating the identification of genes involved in the biosynthesis of the clerodanes,kolavenol,and isokolavenol.We show that clerodane biosynthesis evolved through recruitment and neofunctionalization of genes from gibberellin and abietane metabolism.Despite the assumed monophyletic origin of clerodane biosynthesis,which is widespread in species of the Lamiaceae,our data show distinct evolutionary lineages and suggest polyphyletic origins of clerodane biosynthesis in the family Lamiaceae.Our study not only provides significant insights into the evolution of clerodane biosynthetic pathways in the mint family,Lamiaceae,but also will facilitate the production of anticancer clerodanes through future metabolic engineering efforts.
基金supported by the National Natural Science Foundation of China(Grant No.81801133 to JL)the Young Elite Scientist Sponsorship Program by China Association for Science and Technology(Grant No.2018QNRC001 to JL)+2 种基金the Innovation-Driven Project of Central South University,China(Grant No.20180033040004 to JL)the Natural Science Foundation for Young Scientists of Hunan Province,China(Grant No.2019JJ50974 to GZ)the Natural Science Foundation of Hunan Province for outstanding Young Scholars,China(Grant No.2020JJ3059 to JL).
文摘Non-coding variants in the human genome significantly influence human traits and complex diseases via their regulation and modification effects.Hence,an increasing number of computational methods are developed to predict the effects of variants in human non-coding sequences.However,it is difficult for inexperienced users to select appropriate computational methods from dozens of available methods.To solve this issue,we assessed 12 performance metrics of 24 methods on four independent non-coding variant benchmark datasets:(1)rare germline variants from clinical relevant sequence variants(ClinVar),(2)rare somatic variants from Catalogue Of Somatic Mutations In Cancer(COSMIC),(3)common regulatory variants from curated expression quantitative trait locus(eQTL)data,and(4)disease-associated common variants from curated genomewide association studies(GWAS).All 24 tested methods performed differently under various conditions,indicating varying strengths and weaknesses under different scenarios.Importantly,the performance of existing methods was acceptable for rare germline variants from ClinVar with the area under the receiver operating characteristic curve(AUROC)of 0.4481–0.8033 and poor for rare somatic variants from COSMIC(AUROC=0.4984–0.7131),common regulatory variants from curated eQTL data(AUROC=0.4837–0.6472),and disease-associated common variants from curated GWAS(AUROC=0.4766–0.5188).We also compared the prediction performance of 24 methods for non-coding de novo mutations in autism spectrum disorder,and found that the combined annotation-dependent depletion(CADD)and context-dependent tolerance score(CDTS)methods showed better performance.Summarily,we assessed the performance of 24 computational methods under diverse scenarios,providing preliminary advice for proper tool selection and guiding the development of new techniques in interpreting non-coding variants.
基金Project supported by the National Natural Science Foundation of China (No. 31270062) and the Chongqing Science and Technology Commission (No. cstc2011jjA10089), China
文摘In this paper, by using multivariate divided differences to approximate the partial derivative and superposition, we extend the multivariate quasi-interpolation scheme based on dimension-splitting technique which can reproduce linear polynomials to the scheme quadric polynomials. Furthermore, we give the approximation error of the modified scheme. Our multivariate multiquadric quasi-interpolation scheme only requires information of lo- cation points but not that of the derivatives of approximated function. Finally, numerical experiments demonstrate that the approximation rate of our scheme is significantly im- proved which is consistent with the theoretical results.
基金This work was supported by the Fundamental Research Funds for the Central Universities(Grant No.30919012104)the National Key R&D Program of China(Grant No.2016YFB0600100).
文摘The coal and biomass coupling power genera-tion technology is considered as a promising technology for energy conservation and emission reduction.In this paper,a novel coal and biomass indirect coupling system is proposed based on the technology of biomass gasification and co-combustion of coal and gasification gas.For the sake of comparison,a coal and biomass direct coupling system is also introduced based on the technology of co-combustion of coal and biomass.The process of the direct and the indirect coupling system is simulated.The thermodynamic and economic performances of two systems are analyzed and compared.The simulation indicates that the thermodynamic performance of the indirect coupling system is slightly worse,but the economic performance is better than that of the direct coupling system.When the blending ratio of biomass is 20%,the energy and exergy fficiencies of the indirect coupling system are 42.70%and 41.14%,the intemal rate of returm(IRR)and discounted payback period(DPP)of the system are 25.68%and 8.56 years.The price fluctuation of fuels and products has a great influence on the economic performance of the indirect coupling system.The environmental impact analysis indicates that the indirect coupling system can inhibit the propagation of NOx and reduce the environmental cost.
基金National Natural Science Foundation of China(11804320,61475011)National Key Scientific Instrument and Equipment Development Projects of China(2011YQ13001802)
文摘We demonstrate high-resolution and high-quality terahertz(THz)in-line digital holography based on the synthetic aperture method.The setup is built on a self-developed THz quantum cascade laser,and a lateral resolution better than 70μm(~λ)is achieved at 4.3 THz.To correct intensity differences between sub-holograms before aperture stitching,a practical algorithm with global optimization is proposed.To address the twin-image problem for in-line holography,a sparsity-based phase retrieval algorithm is applied to perform the high-quality reconstruction.Furthermore,a new autofocusing criterion termed"reconstruction objective function"is introduced to obtain the best in-focus reconstruction distance,so the autofocusing procedure and the reconstruction are unified within the same framework.Both simulation and experiment prove its accuracy and robustness.Note that all the methods proposed here can be applied to other wavebands as well.We demonstrate the success of this THz synthetic aperture in-line holography on biological and semiconductor samples,showing its potential applications in bioimaging and materials analysis.
文摘Texture is a pivotal factor for the deep drawability of interstitial free steel (IF steel). The evolution of microstructure and recrystallization texture of Ti-IF steel through the processing of hot rolling, cold rolling and annealing have been studied. The mechanical properties including strain hardening index n and plastic strain ratio r are also measured. For comparison, ferrite rolling and austenite rolling are both studied. The results show that the intensity of γ-fiber after ferrite rolling is higher than that after austenite rolling. The great balance between the {111}〈110〉 and {111}〈112〉 leads to low △r value after annealing. The size of precipitates in ferrite rolled sample is generally larger than that in austenite rolled sample. Compared to austenite rolled sample, the ferrite rolled and annealed one has better formability and its r value reaches 2.36. Different from laboratory production, the test steels were acquired from industrial trial, and all the result can be used in industrial production directly.
基金The National Natural Science Foundation of China under Grant Nos.11464004,11864006 and 11564015Guizhou Scientific and Technological Program(20185781 and 20185781-15)the Foundation of Key Laboratory of Animal Genetics,Breeding and Reproduction in The Plateau Mountainous Region,Ministry of Education(Guizhou University),KY2020243。
文摘Knots are discovered in biophysical systems,such as DNA and proteins.Knotted portions in knotted DNA are significantly bent and their corresponding bending angles are comparable with or larger than the sharp bending angle resulting in flexible defects.The role of flexible defects in the interplay of supercoiling and knotting of circular DNA were predicted by a Monte Carlo simulation.In knotted DNA with a particular knot type,a flexible defect noticeably enhances the supercoiling of the knotted DNA and the decreasing excitation energy makes the knotted portion more compact.A reduction in twist rigidity and unwinding of flexible defects are incorporated into the numerical simulations,so that interplay of supercoiling and knotting of circular DNA is studied under torsional conditions.Increasing unwinding not only results in a wider linking number distribution,but also leads to a drift of the distribution to lower values.A flexible defect has obvious effects on knotting probability.The summation of equilibrium distribution probability for nontrivial knotted DNA with different contour length does not change with excitation energy monotonically and has a maximum at an intermediate value of excitation energy around 5 kBT.In the phase space of knot length and gyration radius of knotted DNA,knot length does not anticorrelate with its gyration radius,which is attributed to the flexible defect in the knotted portion,which leads to the release of bending energy and inhibited the competition between entropy and bending energy.