Alcoholism is an unhealthy lifestyle associated with alcohol dependence.Not only does drinking for a long time leads to poor mental health and loss of self-control,but alcohol seeps into the bloodstream and shortens t...Alcoholism is an unhealthy lifestyle associated with alcohol dependence.Not only does drinking for a long time leads to poor mental health and loss of self-control,but alcohol seeps into the bloodstream and shortens the lifespan of the body’s internal organs.Alcoholics often think of alcohol as an everyday drink and see it as a way to reduce stress in their lives because they cannot see the damage in their bodies and they believe it does not affect their physical health.As their drinking increases,they become dependent on alcohol and it affects their daily lives.Therefore,it is important to recognize the dangers of alcohol abuse and to stop drinking as soon as possible.To assist physicians in the diagnosis of patients with alcoholism,we provide a novel alcohol detection system by extracting image features of wavelet energy entropy from magnetic resonance imaging(MRI)combined with a linear regression classifier.Compared with the latest method,the 10-fold cross-validation experiment showed excellent results,including sensitivity 91.54±1.47%,specificity 93.66±1.34%,Precision 93.45±1.27%,accuracy 92.61±0.81%,F1 score 92.48±0.83%and MCC 85.26±1.62%.展开更多
The rumen is the hallmark organ of ruminants and hosts a diverse ecosystem of microorganisms that facilitates efficient digestion of plant fibers.We analyzed 897 transcriptomes from three Cetartiodactyla lineages:rumi...The rumen is the hallmark organ of ruminants and hosts a diverse ecosystem of microorganisms that facilitates efficient digestion of plant fibers.We analyzed 897 transcriptomes from three Cetartiodactyla lineages:ruminants,camels and cetaceans,as well as data from ruminant comparative genomics and functional assays to explore the genetic basis of rumen functional innovations.We identified genes with relatively high expression in the rumen,of which many appeared to be recruited from other tissues.These genes show functional enrichment in ketone body metabolism,regulation of microbial community,and epithelium absorption,which are the most prominent biological processes involved in rumen innovations.Several modes of genetic change underlying rumen functional innovations were uncovered,including coding mutations,genes newly evolved,and changes of regulatory elements.We validated that the key ketogenesis rate-limiting gene(HMGCS2)with five ruminant-specific mutations was under positive selection and exhibits higher synthesis activity than those of other mammals.Two newly evolved genes(LYZ1 and DEFB1)are resistant to Gram-positive bacteria and thereby may regulate microbial community equilibrium.Furthermore,we confirmed that the changes of regulatory elements accounted for the majority of rumen gene recruitment.These results greatly improve our understanding of rumen evolution and organ evo-devo in general.展开更多
Phloretin is an important skin-lightening and depigmenting agent from the peel of apples. Although de novo production of phloretin has been realized in microbes using the natural pathway from plants, the efficiency of...Phloretin is an important skin-lightening and depigmenting agent from the peel of apples. Although de novo production of phloretin has been realized in microbes using the natural pathway from plants, the efficiency of phloretin production is still not enough for industrial application. Here, we established an artificial pathway in the yeast to produce phloretin via assembling two genes of p-coumaroyl-CoA ligase(4CL) and chalcone synthase(CHS). CHS is a key enzyme which conventionally condenses a CoA-tethered starter with three molecules of malonyl-CoA to form the backbone of flavonoids. However, there was 33% of byproduct generated via CHS by condensing two molecules of malonyl-CoA during the fermentation process. Hence, we introduced a more efficient CHS and improved the supply of malonyl-CoA through two pathways;the by-product ratio was decreased from 33% to 17% and the production of phloretin was improved from 48 to 83.2 mg L^(-1). Finally, a fed-batch fermentation process was optimized and the production of phloretin reached 619.5 mg L^(-1), which was 14-fold higher than that of the previous studies. Our work established a platform for the biosynthesis of phloretin from the low-cost raw material 3-(4-hydroxyphenyl) propanoic acid and also illustrated the potential for industrial scale bio-manufacturing of phloretin.展开更多
基金This research was supported by Zhejiang Provincial Natural Science Foundation of China under Grant No.LY17F010003.
文摘Alcoholism is an unhealthy lifestyle associated with alcohol dependence.Not only does drinking for a long time leads to poor mental health and loss of self-control,but alcohol seeps into the bloodstream and shortens the lifespan of the body’s internal organs.Alcoholics often think of alcohol as an everyday drink and see it as a way to reduce stress in their lives because they cannot see the damage in their bodies and they believe it does not affect their physical health.As their drinking increases,they become dependent on alcohol and it affects their daily lives.Therefore,it is important to recognize the dangers of alcohol abuse and to stop drinking as soon as possible.To assist physicians in the diagnosis of patients with alcoholism,we provide a novel alcohol detection system by extracting image features of wavelet energy entropy from magnetic resonance imaging(MRI)combined with a linear regression classifier.Compared with the latest method,the 10-fold cross-validation experiment showed excellent results,including sensitivity 91.54±1.47%,specificity 93.66±1.34%,Precision 93.45±1.27%,accuracy 92.61±0.81%,F1 score 92.48±0.83%and MCC 85.26±1.62%.
基金supported by the National Natural Science Foundation of China(31822052,31572381)the National Thousand Youth Talents Plan to Y.J.+3 种基金National Natural Science Foundation of China(31660644)to S.H.National Natural Science Foundation of China(41422604)to S.L.The Villum Foundation(VKR 023447)the Independent Research Fund Denmark(8049-00098B)。
文摘The rumen is the hallmark organ of ruminants and hosts a diverse ecosystem of microorganisms that facilitates efficient digestion of plant fibers.We analyzed 897 transcriptomes from three Cetartiodactyla lineages:ruminants,camels and cetaceans,as well as data from ruminant comparative genomics and functional assays to explore the genetic basis of rumen functional innovations.We identified genes with relatively high expression in the rumen,of which many appeared to be recruited from other tissues.These genes show functional enrichment in ketone body metabolism,regulation of microbial community,and epithelium absorption,which are the most prominent biological processes involved in rumen innovations.Several modes of genetic change underlying rumen functional innovations were uncovered,including coding mutations,genes newly evolved,and changes of regulatory elements.We validated that the key ketogenesis rate-limiting gene(HMGCS2)with five ruminant-specific mutations was under positive selection and exhibits higher synthesis activity than those of other mammals.Two newly evolved genes(LYZ1 and DEFB1)are resistant to Gram-positive bacteria and thereby may regulate microbial community equilibrium.Furthermore,we confirmed that the changes of regulatory elements accounted for the majority of rumen gene recruitment.These results greatly improve our understanding of rumen evolution and organ evo-devo in general.
基金financially supported by Talents Team Construction Fund of Northwestern Polytechnical University (NWPU)the National Natural Science Foundation of China (31701722)+1 种基金the China Postdoctoral Science Foundation (2017M620471)the National Natural Science Foundation of China (31901026)。
文摘Phloretin is an important skin-lightening and depigmenting agent from the peel of apples. Although de novo production of phloretin has been realized in microbes using the natural pathway from plants, the efficiency of phloretin production is still not enough for industrial application. Here, we established an artificial pathway in the yeast to produce phloretin via assembling two genes of p-coumaroyl-CoA ligase(4CL) and chalcone synthase(CHS). CHS is a key enzyme which conventionally condenses a CoA-tethered starter with three molecules of malonyl-CoA to form the backbone of flavonoids. However, there was 33% of byproduct generated via CHS by condensing two molecules of malonyl-CoA during the fermentation process. Hence, we introduced a more efficient CHS and improved the supply of malonyl-CoA through two pathways;the by-product ratio was decreased from 33% to 17% and the production of phloretin was improved from 48 to 83.2 mg L^(-1). Finally, a fed-batch fermentation process was optimized and the production of phloretin reached 619.5 mg L^(-1), which was 14-fold higher than that of the previous studies. Our work established a platform for the biosynthesis of phloretin from the low-cost raw material 3-(4-hydroxyphenyl) propanoic acid and also illustrated the potential for industrial scale bio-manufacturing of phloretin.