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冬虫夏草菌(Ophiocordyceps sinensis)基因组测序及高含量重复序列功能探讨
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作者 朱佳馨 刘彤瑶 +5 位作者 杜明昊 朱桔颖 李全平 李文佳 杨恩策 刘杏忠 《今日药学》 CAS 2023年第7期499-503,共5页
目的本研究旨在获取高质量的冬虫夏草菌基因组,为研究冬虫夏草菌生物学及与宿主互作等提供重要支撑。方法利用PacBio SequelⅡ平台的HiFi测序技术对冬虫夏草菌基因组进行测序,完成组装及注释。结果本研究获得的冬虫夏草菌基因组质量目... 目的本研究旨在获取高质量的冬虫夏草菌基因组,为研究冬虫夏草菌生物学及与宿主互作等提供重要支撑。方法利用PacBio SequelⅡ平台的HiFi测序技术对冬虫夏草菌基因组进行测序,完成组装及注释。结果本研究获得的冬虫夏草菌基因组质量目前处于最优水平,基因组完整度为97.7%、准确度高于99.9%,基因组大小为111.24 Mb,重复序列含量达到了81.3%,其中长末端重复序列反转录转座子占基因组总长度的62.2%,同时,根据其他生物中的研究对冬虫夏草菌反转录转座子长末端重复序列的潜在功能进行了讨论。结论本研究获得了高质量的冬虫夏草菌基因组,为研究冬虫夏草菌生物学及与宿主互作奠定了基础。 展开更多
关键词 冬虫夏草菌 基因组 长末端重复序列
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Functional response of the fungus Hirsutella rhossiliensis to the nematode, Heterodera glycines 被引量:1
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作者 SHU Chi LAI YiLing +3 位作者 yang ence CHEN SenYu XIANG MeiChun LIU XingZhong 《Science China(Life Sciences)》 SCIE CAS CSCD 2015年第7期704-712,共9页
Functional response is a key index in determining the population fluctuation in predation. However, the lack of operable research system limits the studies on functional response of fungal predators. Hirsutella rhossi... Functional response is a key index in determining the population fluctuation in predation. However, the lack of operable research system limits the studies on functional response of fungal predators. Hirsutella rhossiliensis is a dominant parasite of the soybean cyst nematode, Heterodera glycines. In a soil microcosm bioassay, we determined fungal biomass at different days within 21 days after inoculation, and parasitism rate of H. glycines by the fungus was determined. The functional response of H. rhossiliensis to H. glycines was established and found to be Holling's type Ill, which was influenced by mycelial densities. Meanwhile, we conducted anti-fungal analysis of metabolic fractions extracted from H. rhossiliensis to explain the potential mechanism of the intraspecific competition illustrated by functional response. The result of anti-fungal experiments indicated that the fungal predators had more complicated interaction at population level than expected, which might be regulated by self-inhibition metabolite(s). This study was the first functional response study of fungal predators in microcosm. With the in- creasing recognition of emerging fungal threats to animal, plant, and ecosystem health, the methodologies and hypotheses proposed in this study might inspire further research in fungal ecology. 展开更多
关键词 fungal predator predation index self-inhibition composition soybean cyst nematode
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冬虫夏草相关术语探讨
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作者 朱佳馨 杨恩策 +1 位作者 李育玲 刘杏忠 《菌物研究》 CAS 2020年第2期63-67,共5页
冬虫夏草是我国传统的名贵中药材,具有悠久的历史,不仅是真菌学、中药学及生态学研究的热点,也是藏区牧民收入的重要来源和新兴产业。然而,真菌分类学、生态学、中药学等不同学科以及产业领域和民众等对冬虫夏草的认识角度和层次不同,... 冬虫夏草是我国传统的名贵中药材,具有悠久的历史,不仅是真菌学、中药学及生态学研究的热点,也是藏区牧民收入的重要来源和新兴产业。然而,真菌分类学、生态学、中药学等不同学科以及产业领域和民众等对冬虫夏草的认识角度和层次不同,对冬虫夏草相关的名称、概念及其内涵的理解存在分歧,导致在交流过程中出现一些不一致,并对学术交流和产业发展带来不必要的负面影响。文中从不同学科、产业和民众的角度对冬虫夏草相关术语进行了论述和探讨,并建议规范化使用冬虫夏草的有关术语。 展开更多
关键词 冬虫夏草 术语 冬虫夏草菌
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The role of CopG mediated DNA bending on the regulation of the σ^(54)-dependent promoters in E. coli
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作者 yang ence 《Chinese Science Bulletin》 SCIE EI CAS 2006年第8期934-940,共7页
In order to investigate the role of DNA bending on the regulation of σ54-dependent promot- ers, we introduced the CopG binding site between the enhancer-like element and the core promoter of glnAp2, nifLp and glnHp2,... In order to investigate the role of DNA bending on the regulation of σ54-dependent promot- ers, we introduced the CopG binding site between the enhancer-like element and the core promoter of glnAp2, nifLp and glnHp2, without changing the dis- tance in between. The expression activities of these homologous promoters were either activated or re- pressed by the CopG-induced DNA bending in E. coli. In this case, similar regulatory pattern (either acti- vated or repressed) could be observed, when the bending centers from CopG are in integral DNA he- lixes interval, while opposite regulatory pattern could be observed, when the bending centers from CopG are in integral plus a half DNA helixes interval. These results suggested that CopG-induced DNA bending can exert regulatory effects on the transcription of σ54-dependent promoters probably by altering the relative DNA helix phase of 54 RNA polymerase and NtrC. 展开更多
关键词 DNA CopG 启动子 大肠杆菌
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