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甲基化芯片筛选结核感染相关基因及后续验证 被引量:1
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作者 陈豪 张晶雅 +5 位作者 胡雪姣 陆小军 王军 周燕虹 应斌武 周静 《四川大学学报(医学版)》 CAS CSCD 北大核心 2018年第5期731-736,775,共7页
目的筛选活动性结核患者DNA甲基化水平显著变化的基因并进行验证。方法 (1)纳入年龄与性别匹配的9例活动性结核患者、3例潜伏性结核患者和3例健康对照,将人血中单个核细胞DNA与芯片杂交,比较结核组与健康组的甲基化差异基因,并对差异基... 目的筛选活动性结核患者DNA甲基化水平显著变化的基因并进行验证。方法 (1)纳入年龄与性别匹配的9例活动性结核患者、3例潜伏性结核患者和3例健康对照,将人血中单个核细胞DNA与芯片杂交,比较结核组与健康组的甲基化差异基因,并对差异基因进行GO功能和Pathway功能分析,以及与表达芯片进行联合分析;(2)收集年龄与性别匹配的活动性结核与健康对照各60例,分别提取全血DNA,使用焦磷酸测序方法对甲基化芯片预测出的结核病相关基因(TLR1、TLR2、TLR4)进行甲基化程度检测。结果 (1)活动性结核患者与健康对照对比,大部分呈现甲基化下调状态,GO分析和Pathway分析结果显示,甲基化差异基因的功能主要富集在白细胞分化、凋亡、自噬、细胞因子调节及炎症反应等与结核密切相关的生物过程中;(2)待验证的3个基因TLR1、TLR2、TLR4包含10个CpG位点,其中TLR1基因的CpG1位点(P<0.001)呈现高甲基化状态,TLR4基因的CpG2位点(P=0.012)呈现低甲基化状态。结论在结核分枝杆菌感染过程中存在基因组DNA的甲基化状态改变,以低甲基化变化为主。其中TLR1基因呈现高甲基化状态,TLR4呈现低甲基化状态,提示上述基因可能在结核病的发生发展过程中具有一定的作用。 展开更多
关键词 结核分枝杆菌 DNA甲基化 甲基化芯片 焦磷酸测序技术 活动性结核病
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Effects of single nucleotide polymorphisms 869 T/C and 915 G/C in the exon 1 locus of transforming growth factor-β1 gene on chronic obstructive pulmonary disease susceptibility in Chinese 被引量:9
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作者 LIU Dai-shun LI Xiao-ou +4 位作者 ying bin-wu CHEN Lei WANG Tao XU Dan WEN Fu-qiang 《Chinese Medical Journal》 SCIE CAS CSCD 2010年第4期390-394,共5页
Background The main risk factor for chronic obstructive pulmonary disease (COPD) is cigarette smoking. However, only 10%-20% of chronic heavy smokers develop systematic COPD. We hypothesized that the inheritance of ... Background The main risk factor for chronic obstructive pulmonary disease (COPD) is cigarette smoking. However, only 10%-20% of chronic heavy smokers develop systematic COPD. We hypothesized that the inheritance of gene polymorphisms could influence the development of COPD, which was investigated by studying two single nucleotide polymorphisms (SNP) in exon 1 of the transforming growth factor-β1 (TGF-β1) gene. Methods We enrolled 219 patients with COPD as the research group and 148 healthy people as the control group, all of whom were Chinese Han people. The polymorphisms of the TGF-β1 gene, 869T/C and 915G/C, were analyzed using the method of amplification refractory mutation system-polymerase chain reaction (ARMS-PCR). Results The occurrence of the TGF-β1 gene 869T/C polymorphism in patients with COPD was significantly different from the control group (P 〈0.05), in which the relative risk of this disease increased in cases who had the C allele (OR: 1.131, 95% CI: 1.101-1.539). There was no increased frequency of TGF-β1 915G/C gene in COPD patients compared with control subjects (P 〉0.05). Conclusions The polymorphism 869T/C in TGF-β1 gene has a significant association with disease occurrence in COPD patients and the C allele might be a risk factor. The homozygous wild-type CC of 869T/C on TGFβ1 could be a predisposing factor in COPD and those who carry the C allele might have particularly susceptibility to developing COPD. 展开更多
关键词 chronic obstructive pulmonary disease transforming growth factor-ill gene polymorphism
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