根据疯草内生真菌苦马豆素合成基因簇中swnK基因KS区域设计引物,构建SYGR Green I实时荧光定量PCR检测方法,初步分析黄花棘豆植物样品中内生真菌生物量与苦马豆素含量的关系。结果表明,基于swnK基因KS区域构建的实时荧光定量PCR法特异...根据疯草内生真菌苦马豆素合成基因簇中swnK基因KS区域设计引物,构建SYGR Green I实时荧光定量PCR检测方法,初步分析黄花棘豆植物样品中内生真菌生物量与苦马豆素含量的关系。结果表明,基于swnK基因KS区域构建的实时荧光定量PCR法特异性较好,灵敏性较高,当真菌起始DNA浓度在0.009~90ng/μL范围时,内生真菌起始DNA浓度的对数值与Ct值呈负相关,内生真菌DNA的最低检出限为0.009ng/μL。在此基础上对黄花棘豆内生真菌生物量的分析表明,苦马豆素含量与内生真菌生物量呈正比。用于疯草内生真菌生物量检测时,基于swnK基因KS区域构建的实时荧光定量PCR方法特异性要高于基于ITS序列构建的方法,其灵敏度、检测限与后者相当,可用于疯草中产苦马豆素内生真菌的定量分析。展开更多
Drought stress is one of the most important factors limiting maize production. Rab17 is an ABA-responsive gene and associated with drought tolerance. In order to identify haplotypic structure and mine allelic variants...Drought stress is one of the most important factors limiting maize production. Rab17 is an ABA-responsive gene and associated with drought tolerance. In order to identify haplotypic structure and mine allelic variants at tab17 locus, nucleotide diversity and linkage disequilibrium （LD） structure of rab17 were evaluated among a mini core set of Chinese diversified maize inbred lines. Totally, 19 SNP and 18 insertion/deletions （InDels） were identified, among which 81% were in non-coding regions and 19% in coding regions. The results showed that a high level of diversity appeared within 1 kb upstream of the rabl 7 locus, and declined quickly downstream of the gene region. Rapid decay of linkage disequilibrium of rabl 7 region with distance within 1 kb was detected. Functional markers which can be developed based on haplotype 14 are expected to have contribution to molecular breeding for drought tolerance.展开更多
文摘根据疯草内生真菌苦马豆素合成基因簇中swnK基因KS区域设计引物,构建SYGR Green I实时荧光定量PCR检测方法,初步分析黄花棘豆植物样品中内生真菌生物量与苦马豆素含量的关系。结果表明,基于swnK基因KS区域构建的实时荧光定量PCR法特异性较好,灵敏性较高,当真菌起始DNA浓度在0.009~90ng/μL范围时,内生真菌起始DNA浓度的对数值与Ct值呈负相关,内生真菌DNA的最低检出限为0.009ng/μL。在此基础上对黄花棘豆内生真菌生物量的分析表明,苦马豆素含量与内生真菌生物量呈正比。用于疯草内生真菌生物量检测时,基于swnK基因KS区域构建的实时荧光定量PCR方法特异性要高于基于ITS序列构建的方法,其灵敏度、检测限与后者相当,可用于疯草中产苦马豆素内生真菌的定量分析。
基金supported by the National Basic Research Program of China (973 Program, 2011CB100105)the National High-Tech R&D Program (863 Program,2006AA10Z188)the National Natural Science Foundation of China (30730063)
文摘Drought stress is one of the most important factors limiting maize production. Rab17 is an ABA-responsive gene and associated with drought tolerance. In order to identify haplotypic structure and mine allelic variants at tab17 locus, nucleotide diversity and linkage disequilibrium （LD） structure of rab17 were evaluated among a mini core set of Chinese diversified maize inbred lines. Totally, 19 SNP and 18 insertion/deletions （InDels） were identified, among which 81% were in non-coding regions and 19% in coding regions. The results showed that a high level of diversity appeared within 1 kb upstream of the rabl 7 locus, and declined quickly downstream of the gene region. Rapid decay of linkage disequilibrium of rabl 7 region with distance within 1 kb was detected. Functional markers which can be developed based on haplotype 14 are expected to have contribution to molecular breeding for drought tolerance.
