Wheat(Triticum aestivum)is among the most important staple crops for safeguarding the food security of the growing world population.To bridge the gap between genebank diversity and breeding programs,we developed an ad...Wheat(Triticum aestivum)is among the most important staple crops for safeguarding the food security of the growing world population.To bridge the gap between genebank diversity and breeding programs,we developed an advanced backcross-nested association mapping plus inter-crossed population(AB-NAMIC)by crossing three popular wheat cultivars as recurrent founders to 20 germplasm lines from a mini core collection.Selective backcrossing combined with selection against undesirable traits and extensive crossing within and between sub-populations created new opportunities to detect unknown genes and increase the frequency of beneficial alleles in the AB-NAMIC population.We performed phenotyping of 590 AB-NAMIC lines and a natural panel of 476 cultivars for six consecutive growing seasons and genotyped these 1066 lines with a 660K SNP array.Genome-wide association studies of both panels for plant development and yield traits demonstrated improved power to detect rare alleles and loci with medium genetic effects in AB-NAMIC.Notably,genome-wide association studies in AB-NAMIC detected the candidate gene TaSWEET6-7B(TraesCS7B03G1216700),which has high homology to the rice SWEET6b gene and exerts strong effects on adaptation and yield traits.The commercial release of two derived AB-NAMIC lines attests to its direct applicability in wheat improvement.Valuable information on genome-wide association studymapping,candidate genes,and their haplotypes for breeding traits are available through WheatGAB.Our research provides an excellent framework for fast-tracking exploration and accumulation of beneficial alleles stored in genebanks.展开更多
Starch is the most abundant substance in wheat(Triticum aestivum L.)endosperm and provides the major carbohydrate energy for human daily life.Starch synthesis-related(SSR)genes are believed to be spatiotemporally spec...Starch is the most abundant substance in wheat(Triticum aestivum L.)endosperm and provides the major carbohydrate energy for human daily life.Starch synthesis-related(SSR)genes are believed to be spatiotemporally specific,but their transcriptional regulation remains unclear in wheat.Here,we investigate the role of the basic helix-loop-helix(bHLH)transcription factor TabHLH95 in starch synthesis.TabHLH95 is preferentially expressed in the developing grains in wheat and encodes a nucleus localized protein without autoactivation activity.The Tabhlh95 knockout mutants display smaller grain size and less starch content than wild type,whereas overexpression of TabHLH95 enhances starch accumulation and significantly improves thousand grain weight.Transcriptome analysis reveals that the expression of multiple SSR genes is significantly reduced in the Tabhlh95 mutants.TabHLH95 binds to the promoters of ADP-glucose pyrophosphorylase large subunit 1(AGPL1-1D/-1B),AGPL2-5D,and isoamylase(ISA1-7D)and enhances their transcription.Intriguingly,TabHLH95 interacts with the nuclear factor Y(NF-Y)family transcription factor TaNF-YB1,thereby synergistically regulating starch synthesis.These results suggest that the TabHLH95-TaNF-YB1 complex positively modulates starch synthesis and grain weight by regulating the expression of a subset of SSR genes,thus providing a good potential approach for genetic improvement of grain productivity in wheat.展开更多
基金supported by the National Key Research and Development Program of China(2022YFD1201503 and 2016YFD0100302)the National Major Agricultural Science and Technology Project(NK2022060101).
文摘Wheat(Triticum aestivum)is among the most important staple crops for safeguarding the food security of the growing world population.To bridge the gap between genebank diversity and breeding programs,we developed an advanced backcross-nested association mapping plus inter-crossed population(AB-NAMIC)by crossing three popular wheat cultivars as recurrent founders to 20 germplasm lines from a mini core collection.Selective backcrossing combined with selection against undesirable traits and extensive crossing within and between sub-populations created new opportunities to detect unknown genes and increase the frequency of beneficial alleles in the AB-NAMIC population.We performed phenotyping of 590 AB-NAMIC lines and a natural panel of 476 cultivars for six consecutive growing seasons and genotyped these 1066 lines with a 660K SNP array.Genome-wide association studies of both panels for plant development and yield traits demonstrated improved power to detect rare alleles and loci with medium genetic effects in AB-NAMIC.Notably,genome-wide association studies in AB-NAMIC detected the candidate gene TaSWEET6-7B(TraesCS7B03G1216700),which has high homology to the rice SWEET6b gene and exerts strong effects on adaptation and yield traits.The commercial release of two derived AB-NAMIC lines attests to its direct applicability in wheat improvement.Valuable information on genome-wide association studymapping,candidate genes,and their haplotypes for breeding traits are available through WheatGAB.Our research provides an excellent framework for fast-tracking exploration and accumulation of beneficial alleles stored in genebanks.
基金supported by the National Natural Science Foundation of China(32201804)the China Postdoctoral Science Foundation(2022M723458).
文摘Starch is the most abundant substance in wheat(Triticum aestivum L.)endosperm and provides the major carbohydrate energy for human daily life.Starch synthesis-related(SSR)genes are believed to be spatiotemporally specific,but their transcriptional regulation remains unclear in wheat.Here,we investigate the role of the basic helix-loop-helix(bHLH)transcription factor TabHLH95 in starch synthesis.TabHLH95 is preferentially expressed in the developing grains in wheat and encodes a nucleus localized protein without autoactivation activity.The Tabhlh95 knockout mutants display smaller grain size and less starch content than wild type,whereas overexpression of TabHLH95 enhances starch accumulation and significantly improves thousand grain weight.Transcriptome analysis reveals that the expression of multiple SSR genes is significantly reduced in the Tabhlh95 mutants.TabHLH95 binds to the promoters of ADP-glucose pyrophosphorylase large subunit 1(AGPL1-1D/-1B),AGPL2-5D,and isoamylase(ISA1-7D)and enhances their transcription.Intriguingly,TabHLH95 interacts with the nuclear factor Y(NF-Y)family transcription factor TaNF-YB1,thereby synergistically regulating starch synthesis.These results suggest that the TabHLH95-TaNF-YB1 complex positively modulates starch synthesis and grain weight by regulating the expression of a subset of SSR genes,thus providing a good potential approach for genetic improvement of grain productivity in wheat.