Despite the global implementation of COVID-19 mitigation measures,the disease continues to maintain transmission.Although mask wearing became one of the key measures for preventing the transmission of COVID-19 early i...Despite the global implementation of COVID-19 mitigation measures,the disease continues to maintain transmission.Although mask wearing became one of the key measures for preventing the transmission of COVID-19 early in the pandemic period,many countries have relaxed the mandatory or recommended wearing of masks.The objective of the present study was to estimate the epidemiological impact of removing the mask-wearing recommendation in Japan.We developed a model to assess the consequences of declining mask-wearing coverage after the government revoked its recommendation in February 2023.The declining mask-wearing coverage was estimated using serial cross-sectional data,and a mathematical model was devised to determine the age-specific incidence of COVID-19 using the observed case count in Tokyo from week of October 3,2022 to October 30,2023.We explored model-based counterfactual scenarios to measure hypothetical situations in which the mask-wearing coverage decreases or increases relative to the observed coverage.The results show that mask-wearing coverage declined from 97%to 69%by the week of October 30,2023,and that if the mask-wearing recommendation had continued,427 lives could have been saved in Tokyo.If the mask-wearing coverage had declined to 25%of the observed level,the model suggests there might have been 1587 additional deaths.Thus,revoking the mask-wearing recommendation had a substantial epidemiological impact.In future pandemics,our proposed approach could provide a realtime quantification of the effects of relaxing countermeasures.展开更多
Although epidemiological surveillance of COVID-19 has been gradually downgraded globally,the transmission of COVID-19 continues.It is critical to quantify the transmission dynamics of COVID-19 using multiple datasets ...Although epidemiological surveillance of COVID-19 has been gradually downgraded globally,the transmission of COVID-19 continues.It is critical to quantify the transmission dynamics of COVID-19 using multiple datasets including wastewater virus concentration data.Herein,we propose a comprehensive method for estimating the effective reproduction number using wastewater data.The wastewater virus concentration data,which were collected twice a week,were analyzed using daily COVID-19 incidence data obtained from Takamatsu,Japan between January 2022 and September 2022.We estimated the shedding load distribution(SLD)as a function of time since the date of infection,using a model employing the delay distribution,which is assumed to follow a gamma distribution,multiplied by a scaling factor.We also examined models that accounted for the temporal smoothness of viral load measurement data.The model that smoothed temporal patterns of viral load was the best fit model(WAIC=2795.8),which yielded a mean estimated distribution of SLD of 3.46 days(95%CrI:3.01–3.95 days).Using this SLD,we reconstructed the daily incidence,which enabled computation of the effective reproduction number.Using the best fit posterior draws of parameters directly,or as a prior distribution for subsequent analyses,we first used a model that assumed temporal smoothness of viral load concentrations in wastewater,as well as infection counts by date of infection.In the subsequent approach,we examined models that also incorporated weekly reported case counts as a proxy for weekly incidence reporting.Both approaches enabled estimations of the epidemic curve as well as the effective reproduction number from twice-weekly wastewater viral load data.Adding weekly case count data reduced the uncertainty of the effective reproduction number.We conclude that wastewater data are still a valuable source of information for inferring the transmission dynamics of COVID-19,and that inferential performance is enhanced when those data are combined with weekly incidence data.展开更多
基金funding from the SECOM Science and Technology Foundationfunding from Health and Labour Sciences Research Grants(grant numbers 20CA 2024,21HB1002,21HA 2016,and 23HA 2005)+2 种基金the Japan Agency for Medical Research and Development(grant numbers JP23fk0108612 and JP23fk0108685)JSPS KAKENHI(grant numbers21H03198 and 22K19670)the Environment Research and Technology Development Fund(grant number JPMEERF20S11804)of the Environmental Restoration and Conservation Agency of Japan,Kao Health Science Research,the Daikin GAP Fund of Kyoto University,the Japan Science and Technology Agency SICORP program(grant numbers JPMJSC20U3 and JPMJSC2105),and the RISTEX program for Science,Technology,and Innovation Policy(grant number JPMJRS22B4).
文摘Despite the global implementation of COVID-19 mitigation measures,the disease continues to maintain transmission.Although mask wearing became one of the key measures for preventing the transmission of COVID-19 early in the pandemic period,many countries have relaxed the mandatory or recommended wearing of masks.The objective of the present study was to estimate the epidemiological impact of removing the mask-wearing recommendation in Japan.We developed a model to assess the consequences of declining mask-wearing coverage after the government revoked its recommendation in February 2023.The declining mask-wearing coverage was estimated using serial cross-sectional data,and a mathematical model was devised to determine the age-specific incidence of COVID-19 using the observed case count in Tokyo from week of October 3,2022 to October 30,2023.We explored model-based counterfactual scenarios to measure hypothetical situations in which the mask-wearing coverage decreases or increases relative to the observed coverage.The results show that mask-wearing coverage declined from 97%to 69%by the week of October 30,2023,and that if the mask-wearing recommendation had continued,427 lives could have been saved in Tokyo.If the mask-wearing coverage had declined to 25%of the observed level,the model suggests there might have been 1587 additional deaths.Thus,revoking the mask-wearing recommendation had a substantial epidemiological impact.In future pandemics,our proposed approach could provide a realtime quantification of the effects of relaxing countermeasures.
基金Y.O.received funding from the SECOM Science and Technology Foundation,The Kyoto University Foundation,and Fujiwara Memorial Foundation.H.N.received funding from Health and Labour Sciences Research Grants(grant numbers 20CA2024,21HB1002,21HA2016,and 23HA2005)the Japan Agency for Medical Research and Development(grant numbers JP23fk0108612 and JP23fk0108685)+3 种基金JSPS KAKENHI(grant numbers 21H03198 and 22K19670)the Environment Research and Technology Development Fund(grant number JPMEERF20S11804)of the Environmental Restoration and Conservation Agency of Japan,Kao Health Science Researchthe Daikin GAP Fund of Kyoto University,the Japan Science and Technology Agency SICORP program(grant numbers JPMJSC20U3 and JPMJSC2105)the RISTEX program for Science,Technology,and Innovation Policy(grant number JPMJRS22B4)。
文摘Although epidemiological surveillance of COVID-19 has been gradually downgraded globally,the transmission of COVID-19 continues.It is critical to quantify the transmission dynamics of COVID-19 using multiple datasets including wastewater virus concentration data.Herein,we propose a comprehensive method for estimating the effective reproduction number using wastewater data.The wastewater virus concentration data,which were collected twice a week,were analyzed using daily COVID-19 incidence data obtained from Takamatsu,Japan between January 2022 and September 2022.We estimated the shedding load distribution(SLD)as a function of time since the date of infection,using a model employing the delay distribution,which is assumed to follow a gamma distribution,multiplied by a scaling factor.We also examined models that accounted for the temporal smoothness of viral load measurement data.The model that smoothed temporal patterns of viral load was the best fit model(WAIC=2795.8),which yielded a mean estimated distribution of SLD of 3.46 days(95%CrI:3.01–3.95 days).Using this SLD,we reconstructed the daily incidence,which enabled computation of the effective reproduction number.Using the best fit posterior draws of parameters directly,or as a prior distribution for subsequent analyses,we first used a model that assumed temporal smoothness of viral load concentrations in wastewater,as well as infection counts by date of infection.In the subsequent approach,we examined models that also incorporated weekly reported case counts as a proxy for weekly incidence reporting.Both approaches enabled estimations of the epidemic curve as well as the effective reproduction number from twice-weekly wastewater viral load data.Adding weekly case count data reduced the uncertainty of the effective reproduction number.We conclude that wastewater data are still a valuable source of information for inferring the transmission dynamics of COVID-19,and that inferential performance is enhanced when those data are combined with weekly incidence data.