纤维强度是衡量棉花纤维品质的重要指标之一。了解棉纤维强度形成的遗传基础对棉花纤维品质的遗传改良具有重要的指导意义。本研究利用83份纤维强度差异显著的陆地棉材料,采用广义线性模型(General linear model,GLM),对5个环境的纤维...纤维强度是衡量棉花纤维品质的重要指标之一。了解棉纤维强度形成的遗传基础对棉花纤维品质的遗传改良具有重要的指导意义。本研究利用83份纤维强度差异显著的陆地棉材料,采用广义线性模型(General linear model,GLM),对5个环境的纤维强度及最佳线性无偏估计值(Best linear unbiased prediction,BLUP)进行全基因组关联分析(Genome-wide association study,GWAS)。结果表明,各环境纤维强度基本符合正态分布,且存在丰富的变异,变异系数为5.55%~8.44%,广义遗传力达到88.67%。GWAS共检测到19个稳定的显著关联SNP位点,分布在A01、A06、D05、D08、D10、D11和D13等7条染色体上,合并为9个数量性状位点(Quantitative trait locus,QTL)区间,其中4个QTL区间与前人定位的QTL区间重叠,其它5个QTL区间是本研究新发现的控制纤维强度性状的稳定位点。根据区间内基因的表达模式及功能注释,共筛选出4个可能与纤维强度相关的候选基因。本研究通过对棉花纤维强度进行全基因组关联分析,为棉花纤维品质性状的分子遗传改良奠定了基础。展开更多
Background: Micronaire is a comprehensive index reflecting the fineness and maturity of cotton fiber.Micronaire is one of the important internal quality indicators of the cotton fiber and is closely related to the val...Background: Micronaire is a comprehensive index reflecting the fineness and maturity of cotton fiber.Micronaire is one of the important internal quality indicators of the cotton fiber and is closely related to the value of the cotton fiber.Understanding the genetic basis of micronaire is required for the genetic improvement of the trait.However,the genetic architecture of micronaire at the genomic level is unclear.The present genome-wide association study(GWAS)aimed to identify the genetic mechanism of the micronaire trait in 83 representa:tive upland cotton lines grown in multiple environments.Results GWAS of micronaire used 83 upland cotton accessions assayed by a Cotton 63 K Illumina Infinium single nucleotide polymorphism(SNP)array.A total of 11 quantitative trait loci(QTLs)for micronaire were detected on 10 chromosomes.These 11 QTLs included 27 identified genes with specific expression patterns.A novel QTL,qFM-A12–1,included 12 significant SNPs,and GhFLA9 was identified as a candidate gene based on haplotype block analysis and on strong and direct linkage disequilibrium between the significantly related SNPs and gene.GhFLA9 was expressed at a high level during secondary wall thickening at 20∼25 days post-anthesis.The expression level of GhFLA9 was significantly higher in the low micronaire line(Msco-12)than that in the high micronaire line(Chuangyou-9).Conclusions: This study provides a genetic reference for genetic improvement of cotton fiber micronaire and a foundation for verification of the functions of GhFLA9.展开更多
文摘纤维强度是衡量棉花纤维品质的重要指标之一。了解棉纤维强度形成的遗传基础对棉花纤维品质的遗传改良具有重要的指导意义。本研究利用83份纤维强度差异显著的陆地棉材料,采用广义线性模型(General linear model,GLM),对5个环境的纤维强度及最佳线性无偏估计值(Best linear unbiased prediction,BLUP)进行全基因组关联分析(Genome-wide association study,GWAS)。结果表明,各环境纤维强度基本符合正态分布,且存在丰富的变异,变异系数为5.55%~8.44%,广义遗传力达到88.67%。GWAS共检测到19个稳定的显著关联SNP位点,分布在A01、A06、D05、D08、D10、D11和D13等7条染色体上,合并为9个数量性状位点(Quantitative trait locus,QTL)区间,其中4个QTL区间与前人定位的QTL区间重叠,其它5个QTL区间是本研究新发现的控制纤维强度性状的稳定位点。根据区间内基因的表达模式及功能注释,共筛选出4个可能与纤维强度相关的候选基因。本研究通过对棉花纤维强度进行全基因组关联分析,为棉花纤维品质性状的分子遗传改良奠定了基础。
基金The present study was funded by National Key Research and Development Program of China(grants nos.2018YFD0101402,2018YFD0100300 and 2016YFD0101400)the Natural Science Foundation of Xinjiang Uygur Autonomous Region of China(grant no.2020D01A135)Agricultural Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences.
文摘Background: Micronaire is a comprehensive index reflecting the fineness and maturity of cotton fiber.Micronaire is one of the important internal quality indicators of the cotton fiber and is closely related to the value of the cotton fiber.Understanding the genetic basis of micronaire is required for the genetic improvement of the trait.However,the genetic architecture of micronaire at the genomic level is unclear.The present genome-wide association study(GWAS)aimed to identify the genetic mechanism of the micronaire trait in 83 representa:tive upland cotton lines grown in multiple environments.Results GWAS of micronaire used 83 upland cotton accessions assayed by a Cotton 63 K Illumina Infinium single nucleotide polymorphism(SNP)array.A total of 11 quantitative trait loci(QTLs)for micronaire were detected on 10 chromosomes.These 11 QTLs included 27 identified genes with specific expression patterns.A novel QTL,qFM-A12–1,included 12 significant SNPs,and GhFLA9 was identified as a candidate gene based on haplotype block analysis and on strong and direct linkage disequilibrium between the significantly related SNPs and gene.GhFLA9 was expressed at a high level during secondary wall thickening at 20∼25 days post-anthesis.The expression level of GhFLA9 was significantly higher in the low micronaire line(Msco-12)than that in the high micronaire line(Chuangyou-9).Conclusions: This study provides a genetic reference for genetic improvement of cotton fiber micronaire and a foundation for verification of the functions of GhFLA9.
