In this study,we propose the first unified implementation strategy for peridynamics in commercial finite element method(FEM)software packages based on their application programming interface using the peridynamics-bas...In this study,we propose the first unified implementation strategy for peridynamics in commercial finite element method(FEM)software packages based on their application programming interface using the peridynamics-based finite element method(PeriFEM).Using ANSYS and ABAQUS as examples,we present the numerical results and implementation details of PeriFEM in commercial FEM software.PeriFEM is a reformulation of the traditional FEM for solving peridynamic equations numerically.It is considered that the non-local features of peridynamics yet possesses the same computational framework as the traditional FEM.Therefore,this implementation benefits from the consistent computational frameworks of both PeriFEM and the traditional FEM.An implicit algorithm is used for both ANSYS and ABAQUS;however,different convergence criteria are adopted owing to their unique features.In ANSYS,APDL enables users to conveniently obtain broken-bond information from UPFs;thus,the convergence criterion is chosen as no new broken bond.In ABAQUS,obtaining broken-bond information is not convenient for users;thus,the default convergence criterion is used in ABAQUS.The codes integrated into ANSYS and ABAQUS are both verified through benchmark examples,and the computational convergence and costs are compared.The results show that,for some specific examples,ABAQUS is more efficient,whereas the convergence criterion adopted in ANSYS is more robust.Finally,3D examples are presented to demonstrate the ability of the proposed approach to deal with complex engineering problems.展开更多
The emergence of we-media provides a new life and learning platform for college students,which is beneficial to the college students'knowledge acquisition and development of individual character.However,it also ch...The emergence of we-media provides a new life and learning platform for college students,which is beneficial to the college students'knowledge acquisition and development of individual character.However,it also challenges the traditional mode of ideological and political education,weakening the influence of the discourse ideological and political education,and the mainstream ideology.Facing these new challenges,determine to better carry out ideological and political education in the new era,colleges and universities must innovate the mode of ideological and political education,enhance the discourse power of ideological and political education and strengthen the ideological construction of colleges and universities in the we-media era.展开更多
Background:Total human immunodeficiency virus(HIV)DNA and integrated HIV DNA are widely used markers of HIV persistence.Droplet digital polymerase chain reaction(ddPCR)can be used for absolute quantification without n...Background:Total human immunodeficiency virus(HIV)DNA and integrated HIV DNA are widely used markers of HIV persistence.Droplet digital polymerase chain reaction(ddPCR)can be used for absolute quantification without needing a standard curve.Here,we developed duplex ddPCR assays to detect and quantify total HIV DNA and integrated HIV DNA.Methods:The limit of detection,dynamic ranges,sensitivity,and reproducibility were evaluated by plasmid constructs containing both the HIV long terminal repeat(LTR)and human CD3 gene(for total HIV DNA)and ACH-2 cells(for integrated HIV DNA).Forty-two cases on stable suppressive antiretroviral therapy(ART)were assayed in total HIV DNA and integrated HIV DNA.Correlation coefficient analysis was performed on the data related to DNA copies and cluster of differentiation 4 positive(CD4^(+))T-cell counts,CD8^(+)T-cell counts and CD4/CD8 T-cell ratio,respectively.The assay linear dynamic range and lower limit of detection(LLOD)were also assessed.Results:The assay could detect the presence of HIV-1 copies 100%at concentrations of 6.3 copies/reaction,and the estimated LLOD of the ddPCR assay was 4.4 HIV DNA copies/reaction(95%confidence intervals[CI]:3.6-6.5 copies/reaction)with linearity over a 5-log_(10)-unit range in total HIV DNA assay.For the integrated HIV DNA assay,the LLOD was 8.0 copies/reaction(95%CI:5.8-16.6 copies/reaction)with linearity over a 3-log 10-unit range.Total HIV DNA in CD4^(+)T cells was positively associated with integrated HIV DNA(r=0.76,P<0.0001).Meanwhile,both total HIV DNA and integrated HIV DNA in CD4^(+)T cells were inversely correlated with the ratio of CD4/CD8 but positively correlated with the CD8^(+)T-cell counts.Conclusions:This ddPCR assay can quantify total HIV DNA and integrated HIV DNA efficiently with robustness and sensitivity.It can be readily adapted for measuring HIV DNA with non-B clades,and it could be beneficial for testing in clinical trials.展开更多
Background:Cluster of differentiation 8(CD8 T)cells play critical roles in eradicating human immunodeficiency virus(HIV)-1 infection,but little is known about the effects of T cells expressing CD8 at low levels(CD8^(l...Background:Cluster of differentiation 8(CD8 T)cells play critical roles in eradicating human immunodeficiency virus(HIV)-1 infection,but little is known about the effects of T cells expressing CD8 at low levels(CD8^(low))or high levels(CD8^(high))on HIV-1 replication inhibition after HIV-1 invasion into individual.Methods:Nineteen patients who had been acutely infected with HIV-1(AHI)and 20 patients with chronic infection(CHI)for≥2 years were enrolled in this study to investigate the dynamics of the quantity,activation,and immune responses of CD3^(+)CD8^(low) T cells and their counterpart CD3^(+)CD8^(high) T cells at different stages of HIV-1 infection.Results:Compared with healthy donors,CD3^(+)CD8^(low) T cells expanded in HIV-1-infected individuals at different stages of infection.As HIV-1 infection progressed,CD3^(+)CD8^(low) T cells gradually decreased.Simultaneously,CD3^(+)CD8^(high) T cells was significantly reduced in the first month of AHI and then increased gradually as HIV-1 infection progressed.The classical activation of CD3^(+)CD8^(low) T cells was highest in the first month of AHI and then reduced as HIV-1 infection progressed and entered the chronic stage.Meanwhile,activated CD38^(-)HLA-DR^(+)CD8^(low) T cells did not increase in the first month of AHI,and the number of these cells was inversely associated with viral load(r=-0.664,P=0.004)but positively associated with the CD4 T-cell count(r=0.586,P=0.014).Increased programmed cell death protein 1(PD-1)abundance on CD3^(+)CD8^(low) T cells was observed from the 1st month of AHI but did not continue to be enhanced,while a significant T cell immunoreceptor with immunoglobulin and immunoreceptor tyrosine-based inhibition motif(ITIM)domains(TIGIT)abundance increase was observed in the 12th month of infection.Furthermore,increased PD-1 and TIGIT abundance on CD3^(+)CD8^(low) T cells was associated with a low CD4 T-cell count(PD-1:r=-0.456,P=0.043;TIGIT:r=-0.488,P=0.029)in CHI.Nonetheless,the nonincrease in PD-1 expression on classically activated CD3^(+)CD8^(low) T cells was inversely associated with HIV-1 viremia in the first month of AHI(r=-0.578,P=0.015).Notably,in the first month of AHI,few CD3^(+)CD8^(low) T cells,but comparable amounts of CD3^(+)CD8^(high) T cells,responded to Gag peptides.Then,weaker HIV-1-specific T-cell responses were induced in CD3^(+)CD8^(low) T cells than CD3^(+)CD8^(high) T cells at the 3rd and 12th months of AHI and in CHI.Conclusions:Our findings suggest that CD3^(+)CD8^(low) T cells play an anti-HIV role in the first month of infection due to their abundance but induce a weak HIV-1-specific immune response.Subsequently,CD3^(+)CD8^(low) T-cell number decreased gradually as infection persisted,and their anti-HIV functions were inferior to those of CD3^(+)CD8^(high) T cells.展开更多
Nanoindentation testing and its Reverse Analysis Method(RAM)show great potential in understanding the tensile properties of metallic alloys with various microstructures.Nevertheless,the tensile properties of heterogen...Nanoindentation testing and its Reverse Analysis Method(RAM)show great potential in understanding the tensile properties of metallic alloys with various microstructures.Nevertheless,the tensile properties of heterogeneous materials such as nickel-based superalloy welded joints have not been well interpreted by combining the microstructures and nanoindentation results,due to their diverse and complex microscopic zones,which throws shade on the properties of separated zones in the material.Here we demonstrated a new method of implanting nanoindentation results into Finite Element Method(FEM)and applied the method to the welded joints with the zones of various microstructure features.The local properties are calculated by the nanoindentation data using RAM,and used as input of Finite Element(FE)simulation of an identical indentation process,to in turn verify the accuracy and reliability of the reverse model.The simulation results reveal that the global mechanical behaviors,such as Young's modulus,yield strength and strain hardening exponent,are related to the local properties to a great extent.Thus,the global properties can be verified by simulation straight after experiments,taking consideration of local properties and dimension parameters of different zones.It is shown that the maximum error between calculation of RAM and testing is within 5.1%in different zones,and the errors of maximum indentation depth and residual depth obtained by FE simulation are less than 2.4%,which indicates that the method provides a reliable prediction of mechanical properties of superalloy welded joints.展开更多
To the Editor:Transmembrane serine protease 4(TMPRSS4;OMIM:606565),which encodes a member of the serine protease family,is involved in various biological processes related to diseases such as cancer and pediatric neur...To the Editor:Transmembrane serine protease 4(TMPRSS4;OMIM:606565),which encodes a member of the serine protease family,is involved in various biological processes related to diseases such as cancer and pediatric neurodegenerative disorders.展开更多
基金the financial support received from the National Natural Science Foundation of China(12272082,11872016)the National Key Laboratory of Shock Wave and Detonation Physics(JCKYS2021212003).
文摘In this study,we propose the first unified implementation strategy for peridynamics in commercial finite element method(FEM)software packages based on their application programming interface using the peridynamics-based finite element method(PeriFEM).Using ANSYS and ABAQUS as examples,we present the numerical results and implementation details of PeriFEM in commercial FEM software.PeriFEM is a reformulation of the traditional FEM for solving peridynamic equations numerically.It is considered that the non-local features of peridynamics yet possesses the same computational framework as the traditional FEM.Therefore,this implementation benefits from the consistent computational frameworks of both PeriFEM and the traditional FEM.An implicit algorithm is used for both ANSYS and ABAQUS;however,different convergence criteria are adopted owing to their unique features.In ANSYS,APDL enables users to conveniently obtain broken-bond information from UPFs;thus,the convergence criterion is chosen as no new broken bond.In ABAQUS,obtaining broken-bond information is not convenient for users;thus,the default convergence criterion is used in ABAQUS.The codes integrated into ANSYS and ABAQUS are both verified through benchmark examples,and the computational convergence and costs are compared.The results show that,for some specific examples,ABAQUS is more efficient,whereas the convergence criterion adopted in ANSYS is more robust.Finally,3D examples are presented to demonstrate the ability of the proposed approach to deal with complex engineering problems.
基金The Fund of Educational reform project of Xinjiang,(Num:2018-JG-16)The Special fund for Ideological and Political Education from Xinjiang Educational Department,(Num:16ZJY08)。
文摘The emergence of we-media provides a new life and learning platform for college students,which is beneficial to the college students'knowledge acquisition and development of individual character.However,it also challenges the traditional mode of ideological and political education,weakening the influence of the discourse ideological and political education,and the mainstream ideology.Facing these new challenges,determine to better carry out ideological and political education in the new era,colleges and universities must innovate the mode of ideological and political education,enhance the discourse power of ideological and political education and strengthen the ideological construction of colleges and universities in the we-media era.
基金supported by the National Key R&D Program of China(Nos.2021YFC2301900 and 2021YFC2301905)the National 13th Five-Year Grand Program on Key Infectious Disease Control(Nos.2018ZX10301-101 and 2018ZX10301101-001-001)+3 种基金the National Natural Science Foundation of China(Nos.82241072,82072271,and 82272319)the High-Level Public Health Specialized Talents Project of Beijing Municipal Health Commission(Nos.2022-2-018 and 2022-1-007)the Climbing the peak(Dengfeng)Talent Training Program of Beijing Hospitals Authority(No.DFL20191701)Beijing Key Laboratory for HIV/AIDS Research(No.BZ0089).
文摘Background:Total human immunodeficiency virus(HIV)DNA and integrated HIV DNA are widely used markers of HIV persistence.Droplet digital polymerase chain reaction(ddPCR)can be used for absolute quantification without needing a standard curve.Here,we developed duplex ddPCR assays to detect and quantify total HIV DNA and integrated HIV DNA.Methods:The limit of detection,dynamic ranges,sensitivity,and reproducibility were evaluated by plasmid constructs containing both the HIV long terminal repeat(LTR)and human CD3 gene(for total HIV DNA)and ACH-2 cells(for integrated HIV DNA).Forty-two cases on stable suppressive antiretroviral therapy(ART)were assayed in total HIV DNA and integrated HIV DNA.Correlation coefficient analysis was performed on the data related to DNA copies and cluster of differentiation 4 positive(CD4^(+))T-cell counts,CD8^(+)T-cell counts and CD4/CD8 T-cell ratio,respectively.The assay linear dynamic range and lower limit of detection(LLOD)were also assessed.Results:The assay could detect the presence of HIV-1 copies 100%at concentrations of 6.3 copies/reaction,and the estimated LLOD of the ddPCR assay was 4.4 HIV DNA copies/reaction(95%confidence intervals[CI]:3.6-6.5 copies/reaction)with linearity over a 5-log_(10)-unit range in total HIV DNA assay.For the integrated HIV DNA assay,the LLOD was 8.0 copies/reaction(95%CI:5.8-16.6 copies/reaction)with linearity over a 3-log 10-unit range.Total HIV DNA in CD4^(+)T cells was positively associated with integrated HIV DNA(r=0.76,P<0.0001).Meanwhile,both total HIV DNA and integrated HIV DNA in CD4^(+)T cells were inversely correlated with the ratio of CD4/CD8 but positively correlated with the CD8^(+)T-cell counts.Conclusions:This ddPCR assay can quantify total HIV DNA and integrated HIV DNA efficiently with robustness and sensitivity.It can be readily adapted for measuring HIV DNA with non-B clades,and it could be beneficial for testing in clinical trials.
基金supported by grants from the National Natural Science Foundation of China(NSFC,81974303)the High-Level Public Health Specialized Talents Project of Beijing Municipal Health Commission(2022-2-018)+7 种基金the Ministry of Science and Technology of China(CPL-1233)the“Climbing the peak(Dengfeng)”Talent Training Program of Beijing Hospitals Authority(DFL20191701 and DFL20181701)the Beijing Health Technologies Promotion Program(BHTPP2020)Beijing Key Laboratory for HIV/AIDS Research(BZ0089 and BZ0373)Beijing Natural Science Foundation(7191004)Beijing Municipal Science and Technology Project(Z211100002521024)the Natural Science Foundation of Capital Medical University(PYZ21126)and the Scientific Research Project of Beijing Youan Hospital(CCMU-2020-BJYAYY-2020YC-01 and CCMU-2021-YNKTXF2021001).
文摘Background:Cluster of differentiation 8(CD8 T)cells play critical roles in eradicating human immunodeficiency virus(HIV)-1 infection,but little is known about the effects of T cells expressing CD8 at low levels(CD8^(low))or high levels(CD8^(high))on HIV-1 replication inhibition after HIV-1 invasion into individual.Methods:Nineteen patients who had been acutely infected with HIV-1(AHI)and 20 patients with chronic infection(CHI)for≥2 years were enrolled in this study to investigate the dynamics of the quantity,activation,and immune responses of CD3^(+)CD8^(low) T cells and their counterpart CD3^(+)CD8^(high) T cells at different stages of HIV-1 infection.Results:Compared with healthy donors,CD3^(+)CD8^(low) T cells expanded in HIV-1-infected individuals at different stages of infection.As HIV-1 infection progressed,CD3^(+)CD8^(low) T cells gradually decreased.Simultaneously,CD3^(+)CD8^(high) T cells was significantly reduced in the first month of AHI and then increased gradually as HIV-1 infection progressed.The classical activation of CD3^(+)CD8^(low) T cells was highest in the first month of AHI and then reduced as HIV-1 infection progressed and entered the chronic stage.Meanwhile,activated CD38^(-)HLA-DR^(+)CD8^(low) T cells did not increase in the first month of AHI,and the number of these cells was inversely associated with viral load(r=-0.664,P=0.004)but positively associated with the CD4 T-cell count(r=0.586,P=0.014).Increased programmed cell death protein 1(PD-1)abundance on CD3^(+)CD8^(low) T cells was observed from the 1st month of AHI but did not continue to be enhanced,while a significant T cell immunoreceptor with immunoglobulin and immunoreceptor tyrosine-based inhibition motif(ITIM)domains(TIGIT)abundance increase was observed in the 12th month of infection.Furthermore,increased PD-1 and TIGIT abundance on CD3^(+)CD8^(low) T cells was associated with a low CD4 T-cell count(PD-1:r=-0.456,P=0.043;TIGIT:r=-0.488,P=0.029)in CHI.Nonetheless,the nonincrease in PD-1 expression on classically activated CD3^(+)CD8^(low) T cells was inversely associated with HIV-1 viremia in the first month of AHI(r=-0.578,P=0.015).Notably,in the first month of AHI,few CD3^(+)CD8^(low) T cells,but comparable amounts of CD3^(+)CD8^(high) T cells,responded to Gag peptides.Then,weaker HIV-1-specific T-cell responses were induced in CD3^(+)CD8^(low) T cells than CD3^(+)CD8^(high) T cells at the 3rd and 12th months of AHI and in CHI.Conclusions:Our findings suggest that CD3^(+)CD8^(low) T cells play an anti-HIV role in the first month of infection due to their abundance but induce a weak HIV-1-specific immune response.Subsequently,CD3^(+)CD8^(low) T-cell number decreased gradually as infection persisted,and their anti-HIV functions were inferior to those of CD3^(+)CD8^(high) T cells.
基金the financial support by the National Nature Science Foundation of China(No.52075021)the support from Department of Materials Science&Engineering at The University of Toronto.
文摘Nanoindentation testing and its Reverse Analysis Method(RAM)show great potential in understanding the tensile properties of metallic alloys with various microstructures.Nevertheless,the tensile properties of heterogeneous materials such as nickel-based superalloy welded joints have not been well interpreted by combining the microstructures and nanoindentation results,due to their diverse and complex microscopic zones,which throws shade on the properties of separated zones in the material.Here we demonstrated a new method of implanting nanoindentation results into Finite Element Method(FEM)and applied the method to the welded joints with the zones of various microstructure features.The local properties are calculated by the nanoindentation data using RAM,and used as input of Finite Element(FE)simulation of an identical indentation process,to in turn verify the accuracy and reliability of the reverse model.The simulation results reveal that the global mechanical behaviors,such as Young's modulus,yield strength and strain hardening exponent,are related to the local properties to a great extent.Thus,the global properties can be verified by simulation straight after experiments,taking consideration of local properties and dimension parameters of different zones.It is shown that the maximum error between calculation of RAM and testing is within 5.1%in different zones,and the errors of maximum indentation depth and residual depth obtained by FE simulation are less than 2.4%,which indicates that the method provides a reliable prediction of mechanical properties of superalloy welded joints.
基金Foundation of Southwest Medical University(Nos.2021ZKMS004 and 2021ZKQN109)the Research Foundation of the Science and Technology Department of Sichuan Province(No.2022NSFSC0737)+1 种基金in part by the Research Foundation of Luzhou City(No.2021-SYF-37)the National Natural Science Foundation of China(Nos.81672887 and 82073263)
文摘To the Editor:Transmembrane serine protease 4(TMPRSS4;OMIM:606565),which encodes a member of the serine protease family,is involved in various biological processes related to diseases such as cancer and pediatric neurodegenerative disorders.