Integration of oncogenic DNA viruses into the human genome is a key step in most virusinduced carcinogenesis.Here,we constructed a virus integration site(VIS)Atlas database,an extensive collection of integration break...Integration of oncogenic DNA viruses into the human genome is a key step in most virusinduced carcinogenesis.Here,we constructed a virus integration site(VIS)Atlas database,an extensive collection of integration breakpoints for three most prevalent oncoviruses,human papillomavirus,hepatitis B virus,and Epstein-Barr virus based on the next-generation sequencing(NGS)data,literature,and experimental data.There are 63,179 breakpoints and 47,411 junctional sequences with full annotations deposited in the VIS Atlas database,comprising 47 virus genotypes and 17 disease types.The VIS Atlas database provides(1)a genome browser for NGS breakpoint quality check,visualization of VISs,and the local genomic context;(2)a novel platform to discover integration patterns;and(3)a statistics interface for a comprehensive investigation of genotypespecific integration features.Data collected in the VIS Atlas aid to provide insights into virus pathogenic mechanisms and the development of novel antitumor drugs.展开更多
基金supported by the National Science and Technology Major Project of the Ministry of Science and Technology of China(Grant No.2018ZX10301402)the National Natural Science Foundation of China(Grant No.81761148025)+6 种基金the Major Projects of Guangzhou Science and Technology Bureau,China(Grant No.201704020093)the National Ten Thousands Plan for Young Top Talents,Young Pearl River Scholar,International Cooperation and Exchange Projects of the National Natural Science Foundation of China(China&Russian)(Grant No.17-54-80078)the Major Projects of Wuhan Municipal Health Commission of China(Grant No.WX19M02)the Major Projects of Hubei Provincial Health Commission of China(Grant No.WJ2019H312)the Dongguan Social Development Key Project of China(Grant No.202050715007221)the Regional Joint Fund Project of Guangdong Basic and Applied Basic Research Foundation of China(Regional Cultivation Project,Grant No.2021B1515140063)the Dongguan Social Development Key Project of China(Grant No.20221800905772).
文摘Integration of oncogenic DNA viruses into the human genome is a key step in most virusinduced carcinogenesis.Here,we constructed a virus integration site(VIS)Atlas database,an extensive collection of integration breakpoints for three most prevalent oncoviruses,human papillomavirus,hepatitis B virus,and Epstein-Barr virus based on the next-generation sequencing(NGS)data,literature,and experimental data.There are 63,179 breakpoints and 47,411 junctional sequences with full annotations deposited in the VIS Atlas database,comprising 47 virus genotypes and 17 disease types.The VIS Atlas database provides(1)a genome browser for NGS breakpoint quality check,visualization of VISs,and the local genomic context;(2)a novel platform to discover integration patterns;and(3)a statistics interface for a comprehensive investigation of genotypespecific integration features.Data collected in the VIS Atlas aid to provide insights into virus pathogenic mechanisms and the development of novel antitumor drugs.
