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Characterization of a 4.1 Mb inversion harboring the stripe rust resistance gene YR86 on wheat chromosome 2AL
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作者 Qiang Cao Zhanwang Zhu +13 位作者 Dengan Xu Jianhui Wu Xiaowan Xu Yan Dong Yingjie Bian Fugong Ding Dehui Zhao Yang Tu Ling Wu Dejun Han Caixia Lan Xianchun Xia Zhonghu He Yuanfeng Hao 《The Crop Journal》 SCIE CSCD 2024年第4期1168-1175,共8页
Wheat cultivar Zhongmai 895 was earlier found to carry YR86 in an 11.6 Mb recombination-suppressed region on chromosome 2AL when crossed with Yangmai 16.To fine-map the YR86 locus,we developed two large F2 populations... Wheat cultivar Zhongmai 895 was earlier found to carry YR86 in an 11.6 Mb recombination-suppressed region on chromosome 2AL when crossed with Yangmai 16.To fine-map the YR86 locus,we developed two large F2 populations from crosses Emai 580/Zhongmai 895 and Avocet S/Zhongmai 895.Remarkably,both populations exhibited suppressed recombination in the same 2AL region.Collinearity analysis across Chinese Spring,Aikang 58,and 10+wheat genomes revealed a 4.1 Mb chromosomal inversion spanning 708.5-712.6 Mb in the Chinese Spring reference genome.Molecular markers were developed in the breakpoint and were used to assess a wheat cultivar panel,revealing that Chinese Spring,Zhongmai 895,and Jimai 22 shared a common sequence named InvCS,whereas Aikang 58,Yangmai 16,Emai 580,and Avocet S shared the sequence named InvAK58.The inverted configuration explained the suppressed recombination observed in all three bi-parental populations.Normal recombination was observed in a Jimai 22/Zhongmai 895 F2 population,facilitating mapping of YR86 to a genetic interval of 0.15 cM corresponding to 710.27-712.56 Mb falling within the inverted region.Thirty-three high-confidence genes were annotated in the interval using the Chinese Spring reference genome,with six identified as potential candidates for YR86 based on genome and transcriptome analyses.These results will accelerate map-based cloning of YR86 and its deployment in wheat breeding. 展开更多
关键词 Adult-plant resistance Chromosomal inversion Puccinia striiformis Triticum aestivum
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Loss of heterozygosity for chromosomes 16q in Wilms tumors predicts outcomes:A meta-analysis
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作者 Yuan-Hua Song Wen-Ling Li +2 位作者 Zhen Yang Yan Gao Zhi-Ping Feng 《World Journal of Gastrointestinal Oncology》 SCIE 2024年第5期2159-2167,共9页
BACKGROUND The research findings suggest that the prognosis of children with Wilms tumor(WT)is affected by various factors.Some scholars have indicated that loss of heterozygosity(LOH)on chromosome 16q is associated w... BACKGROUND The research findings suggest that the prognosis of children with Wilms tumor(WT)is affected by various factors.Some scholars have indicated that loss of heterozygosity(LOH)on chromosome 16q is associated with a poor prognosis in patients with WT.AIM To further elucidate this relationship,we conducted a meta-analysis.METHODS This meta-analysis was registered in INPLASY(INPLASY2023100060).We systematically searched databases including Embase,PubMed,Web of Science,Cochrane,and Google Scholar up to May 31,2020,for randomized trials reporting any intrapartum fetal surveillance approach.The meta-analysis was performed within a frequentist framework,and the quality and network inconsistency of trials were assessed.Odds ratios and 95%CIs were calculated to report the relationship between event-free survival and 16q LOH in patients with WT.RESULTS Eleven cohort studies were included in this meta-analysis to estimate the relationship between event-free survival and 16q LOH in patients with WT(I^(2)=25%,P<0.001).As expected,16q LOH can serve as an effective predictor of eventfree survival in patients with WT(risk ratio=1.95,95%CI:1.52–2.49,P<0.001).CONCLUSION In pediatric patients with WT,there exists a partial correlation between 16q LOH and an unfavorable treatment prognosis.Clinical detection of 16q chromosome LOH warrants increased attention to the patient’s prognosis. 展开更多
关键词 Loss of heterozygosity Wilms tumor Survival time chromosomes 16q
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Development of EST-PCR Markers for the Chromosome 4V of Haynaldia villosa and Their Application in Identification of 4V Chromosome Structural Aberrants 被引量:9
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作者 ZHAO Ren-hui WANG Hai-yan +5 位作者 JIA Qi XIAO Jin YUAN Chun-xia ZHANG Ya-jun HU Qing-shan WANG Xiu-e 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2014年第2期282-289,共8页
EST-PCR based molecular markers specific for alien chromosomes are not only useful for the detection of the introgressed alien chromatin in the wheat background, but also provide evidence of the syntenic relationship ... EST-PCR based molecular markers specific for alien chromosomes are not only useful for the detection of the introgressed alien chromatin in the wheat background, but also provide evidence of the syntenic relationship between homoeologous chromosomes. In the present study, in order to develop high density and evenly distributed molecular markers on chromosome 4V of Haynaldia villosa, a total of 607 primer pairs were designed according to the EST sequences, which were previously located in 23 different bins of wheat chromosomes 4A, 4B and 4D. By using the Triticum durum-H, villosa amphiploid and T. aestivum-H, villosa alien chromosome lines involving chromosome 4V, it was found that 9.23% of the tested primers could amplify specific bands for chromosome 4V. Thirty and twenty-six specific markers could be assigned to chromosome arms 4VS and 4VL, respectively. These 4V specific markers provided efficient tools for the characterization of structural variation involving the chromosome 4V as well as for the selection of useful genes located on chromosome 4V in breeding programs. 展开更多
关键词 Haynaldia villosa molecular marker Triticum aestivum chromosome engineering
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Development of EST-PCR markers specific to the long arm of chromosome 6V of Dasypyrum villosum 被引量:2
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作者 SUN Hao-jie SONG Jing-jing +7 位作者 XIAO Jin XU Tao WEI Xing YUAN Chun-xia CAO Ai-zhong XING Li-ping WANG Hai-yan WANG Xiu-e 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2018年第8期1720-1726,共7页
Expressed sequence tags-derived polymerase chain reaction(EST-PCR) molecular markers specific for alien chromosomes can be used to not only monitor the introgressed alien chromatin in wheat background, but also provid... Expressed sequence tags-derived polymerase chain reaction(EST-PCR) molecular markers specific for alien chromosomes can be used to not only monitor the introgressed alien chromatin in wheat background, but also provide the evidence of the syntenic relationship between homoeologous chromosomes. In the present study, in order to develop high density and evenly distributed molecular markers specific for chromosome 6 VL of Dasypyrum villosum, 297 primer pairs were designed based on the expressed sequence tags(EST) sequences, which were previously mapped in different bins of the long arms of wheat homoeologous 6 AL, 6 BL, and 6 DL. By using the Triticum aestivum, D. villosum, T. durum-D. villosum amphiploid, and T. aestivum-D. villosum alien chromosome lines involving chromosome 6 V, it was found that 32(10.77%) primers could amplify specific bands for chromosome 6 V, and 31 could be allocated to chromosome arm 6 VL. These 6 VL specific markers provided efficient tools for the characterization of structural variation involving the chromosome 6 VL in common wheat background as well as for the selection of useful genes located on 6 VL in breeding programs. 展开更多
关键词 Dasypyrum villosum molecular marker common wheat alien chromosome line
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Comprehensive cytological characterization of the Gossypium hirsutum genome based on the development of a set of chromosome cytological markers 被引量:1
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作者 Wenbo Shan Yanqin Jiang +1 位作者 Jinlei Han Kai Wang 《The Crop Journal》 SCIE CAS CSCD 2016年第4期256-265,共10页
Cotton is the world's most important natural fiber crop. It is also a model system for studying polyploidization, genomic organization, and genome-size variation. Integrating the cytological characterization of co... Cotton is the world's most important natural fiber crop. It is also a model system for studying polyploidization, genomic organization, and genome-size variation. Integrating the cytological characterization of cotton with its genetic map will be essential for understanding its genome structure and evolution, as well as for performing further genetic-map based mapping and cloning. In this study, we isolated a complete set of bacterial artificial chromosome clones anchored to each of the 52 chromosome arms of the tetraploid cotton Gossypium hirsutum. Combining these with telomere and centromere markers, we constructed a standard karyotype for the G. hirsutum inbred line TM-1. We dissected the chromosome arm localizations of the 45 S and 5S r DNA and suggest a centromere repositioning event in the homoeologous chromosomes AT09 and DT09. By integrating a systematic karyotype analysis with the genetic linkage map, we observed different genome sizes and chromosomal structures between the subgenomes of the tetraploid cotton and those of its diploid ancestors. Using evidence of conserved coding sequences, we suggest that the different evolutionary paths of non-coding retrotransposons account for most of the variation in size between the subgenomes of tetraploid cotton and its diploid ancestors. These results provide insights into the cotton genome and will facilitate further genome studies in G. hirsutum. 展开更多
关键词 Cotton KARYOTYPE CHROMOSOMAL size variation Cytological CHARACTERIZATION Fluorescence in SITU hybridization
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Chromosomal localization of 5S rDNA in Chinese shrimp (Fenneropenaeus chinensis):a chromosome-specific marker for chromosome identification 被引量:2
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作者 郇聘 张晓军 +3 位作者 李富花 赵翠 张成松 相建海 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2010年第2期233-238,共6页
Chinese shrimp(Fenneropenaeus chinensis)is an economically important aquaculture species in China.However,cytogenetic and genomic data is limited in the organism partly because the chromosomes are difficult to isolate... Chinese shrimp(Fenneropenaeus chinensis)is an economically important aquaculture species in China.However,cytogenetic and genomic data is limited in the organism partly because the chromosomes are difficult to isolate and analyze.In this study,fluorescence in-situ hybridization(FISH) was used to identify the chromosomes of F.chinensis.The 5S ribosomal RNA gene(rDNA)of F. chinensis was isolated,cloned and then used as a hybridization probe.The results show that the 5S rDNA was located on one pair of homologous chromosomes in F.chinensis.In addition,triploid shrimp were used to evaluate the feasibility of chromosome identification using FISH and to validate the method.It was confirmed that 5S rDNA can be used as a chromosome-specific probe for chromosome identification in F.chinensis.The successful application of FISH in F.chinensis shows that chromosome-specific probes can be developed and this finding will facilitate further research on the chromosomes of penaeid shrimps. 展开更多
关键词 RDNA序列 染色体鉴定 特异性探针 中国对虾 染色体定位 核糖体RNA基因 同源染色体配对 标记
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Characterization of meiotic chromosome behavior in the autopolyploid Saccharum spontaneum reveals preferential chromosome pairing without distinct DNA sequence variation
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作者 Xin Zhang Zhuang Meng +4 位作者 Jinlei Han Haris Khurshid Ayman Esh Robert Hasterok Kai Wang 《The Crop Journal》 SCIE CSCD 2023年第5期1550-1558,共9页
Autopolyploidy and allopolyploidy may represent an evolutionary advantage and are more common in plants than assumed. However, less attention has been paid to autopolyploidy than to allopolyploidy,and its evolutionary... Autopolyploidy and allopolyploidy may represent an evolutionary advantage and are more common in plants than assumed. However, less attention has been paid to autopolyploidy than to allopolyploidy,and its evolutionary consequences are largely unclear, especially for plants with high ploidy levels. In this study, we developed oligonucleotide(oligo)-based chromosome painting probes to identify individual chromosomes in S. spontaneum. Using fluorescence in situ hybridization(FISH), we investigated chromosome behavior during pachytene, metaphase, anaphase, and telophase of meiosis I(MI) in autotetraploid,autooctoploid, and autodecaploid S. spontaneum clones. All autopolyploid clones showed stable diploidized chromosome behavior;so that homologous chromosomes formed almost exclusively bivalents during MI. Two copies of homologous chromosome 8 with similar sizes in the autotetraploid clone showed preferential pairing with each other with respect to the other copies. However, sequence variation analysis showed no apparent differences among homologs of chromosome 8 and all other chromosomes. We suggest that either the stable diploidized pairing or the preferential pairing between homologous copies of chromosome 8 in the studied autopolyploid sugarcane are accounted for by unknown mechanisms other than DNA sequence similarity. Our results reveal evolutionary consequences of stable meiotic behavior in autopolyploid plants. 展开更多
关键词 AUTOPOLYPLOIDY Saccharum spontaneum Meiosis I chromosome behavior chromosome pairing
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Chromosome 5P of Agropyron cristatum induces chromosomal translocation by disturbing homologous chromosome pairing in a common wheat background
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作者 Haiming Han Xinyuan Ma +9 位作者 Zhen Wang Kai Qi Wenjing Yang Weihua Liu Jinpeng Zhang Shenghui Zhou Yuqing Lu Xinming Yang Xiuquan Li Lihui Li 《The Crop Journal》 SCIE CSCD 2023年第1期228-237,共10页
Wide hybridization is a strategy for broadening the genetic basis of wheat. Because an efficient method for inducing wheat–alien chromosome translocations will allow producing useful germplasm, it is desirable to dis... Wide hybridization is a strategy for broadening the genetic basis of wheat. Because an efficient method for inducing wheat–alien chromosome translocations will allow producing useful germplasm, it is desirable to discover new genes that induce chromosomal variation. In this study, chromosome 5P from A.cristatum was shown to induce many types of chromosomal structural variation in a common wheat background, including nonhomoeologous chromosome translocations, as revealed by genomic in situ hybridization, fluorescence in situ hybridization, and DNA marker analysis. Aberrant meiosis was associated with chromosomal structural variation, and aberrant meiotic behavior was observed in wheat–A.cristatum 5P monosomic and disomic addition lines, suggesting that the effect of chromosome 5P was independent of the number of chromosome 5P copies. Chromosome 5P disturbed homologous chromosome pairing at pachytene stage in a common wheat background, resulting in a high frequency of univalent formation and reduced crossing over. Thirteen genes involved in DNA repair or chromatin remodeling, including RAD52-like and MSH6 genes, were differentially expressed(upregulated) in wheat–A. cristatum 5P addition lines according to transcriptome analysis, implicating chromosome 5P in the process of meiotic double-strand break repair. These findings provide a new, efficient tool for inducing wheat–alien chromosome translocations and producing new germplasm. 展开更多
关键词 Agropyron cristatum WHEAT chromosome 5P TRANSLOCATION chromosome pairing
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Rapid identification of Psathyrostachys huashanica Keng chromosomes in wheat background based on ND-FISH and SNP array methods
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作者 LI Jia-chuang LI Jiao-jiao +9 位作者 ZHAO Li ZHAO Ji-xin WU Jun CHEN Xin-hong ZHANG Li-yu DONG Pu-hui WANG Li-ming ZHAO De-hui WANG Chun-ping PANG Yu-hui 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第10期2934-2948,共15页
Psathyrostachys huashanica Keng(2n=2x=14,NsNs)is regarded as a valuable wild relative species for common wheat cultivar improvement because of its abundant beneficial agronomic traits.However,although the development ... Psathyrostachys huashanica Keng(2n=2x=14,NsNs)is regarded as a valuable wild relative species for common wheat cultivar improvement because of its abundant beneficial agronomic traits.However,although the development of many wheat–P.huashanica-derived lines provides a germplasm base for the transfer of excellent traits,the lag in the identification of P.huashanica chromosomes in the wheat background has limited the study of these lines.In this study,three novel nondenaturing fluorescence in situ hybridization(ND-FISH)-positive oligo probes were developed.Among them,HS-TZ3 and HS-TZ4 could specifically hybridize with P.huashanica chromosomes,mainly in the telomere area,and HS-CHTZ5 could hybridize with the chromosomal centromere area.We sequentially constructed a P.huashanica FISH karyotype and idiogram that helped identify the homologous groups of introduced P.huashanica chromosomes.In detail,1Ns and 2Ns had opposite signals on the short and long arms,3Ns,4Ns,and 7Ns had superposed two-color signals,5Ns and 6Ns had fluorescent signals only on their short arms,and 7Ns had signals on the intercalary of the long arm.In addition,we evaluated different ways to identify alien introgression lines by using low-density single nucleotide polymorphism(SNP)arrays and recommended the SNP homozygosity rate in each chromosome as a statistical pattern.The 15K SNP array is widely applicable for addition,substitution,and translocation lines,and the 40K SNP array is the most accurate for recognizing transposed intervals between wheat and alien chromosomes.Our research provided convenient methods to distinguish the homologous group of P.huashanica chromosomes in a common wheat background based on ND-FISH and SNP arrays,which is of great significance for efficiently identifying wheat–P.huashanica-derived lines and the further application of Ns chromosomes. 展开更多
关键词 Psathyrostachys huashanica Ns chromosomes ND-FISH SNP array common wheat
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Nannochloropsis artificial chromosomes(Nanno ACs)loom on the horizon
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作者 Li GUO Guanpin YANG 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2023年第6期2336-2347,共12页
Species in genus Nannochloropsis,especially N.oceanica and N.gaditana,have been evolving as the model microalgae for both application and theory studies.The position effect of genome integration,the carrying capabilit... Species in genus Nannochloropsis,especially N.oceanica and N.gaditana,have been evolving as the model microalgae for both application and theory studies.The position effect of genome integration,the carrying capability limitation of integrative vectors and the instability of non-integrative vectors have hindered Nannochloropsis genetic modification with concatenate genes and extremely long DNA fragments.The molecular tools including genetic transformation,homologous recombination,gene edition,gene stacking and episome vectors for transient gene expression and diverse reporters and selection markers have been rapidly developing in Nannochloropsis species.The construction of animal and plant artificial chromosomes with“top down”strategy has set fine examples for the construction of Nannochloropsis artificial chromosomes(NannoACs).It seems that the methods and materials to set the foundation for constructing NannoACs are at hands.In this review,we outlined the current status of transgenes in Nannochloropsis species,summarized the limitations of both integrative and non-integrative vectors,and proposed a tentative approach to construct NannoACs by doubling and stabilizing the genome first,and then truncating the natural chromosomes.NannoACs once constructed will facilitate transferring the desired traits and concatenate genes into Nannochloropsis genetic backgrounds,thus contributing towards its genetic improvement and synthetic biological studies. 展开更多
关键词 NANNOCHLOROPSIS artificial chromosome microalgal genetic improvement gene stacking concatenate gene trait transfer
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Genetic Structure of Cartagena de Indias Population Using Hypervariable Markers of Y Chromosome
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作者 Doris E. G.-Camargo Rafael Camacho-Mejorado +5 位作者 Claudio Gómez-Alegría Angelo Alario Esther A. H.-Tobías Gustavo Mora- García Marco A. M.-Ríos Rocío Gómez 《Open Journal of Genetics》 2015年第1期27-41,共15页
Ethnicity has been associated with the incidence of diseases and consequently it is a cornerstone in medical genetic studies. It is mainly important in admixture populations, where the population stratification can pr... Ethnicity has been associated with the incidence of diseases and consequently it is a cornerstone in medical genetic studies. It is mainly important in admixture populations, where the population stratification can produce spurious results that lead to erroneous conclusions. Consequently, population stratification has become one of the most important confounding factors in population-based genetic association studies, especially in Latino populations. Cartagena de Indias is a cosmopolitan city with dissimilar ancestry proportions due to recent miscegenation. This population mainly exhibits African and Amerindian matrilineal ancestries. Nevertheless, important asymmetries in the paternal genetic history related to the complex patterns of migration in the colonial period increase the male genetic diversity in this population. As a result of this recent admixture, population stratification has arisen, where each subpopulation is not equally represented. Consequently, the allele differences between cases and controls could be related with different frequencies among different population strata rather than the association of the genes with the disease. In order to define the patrilineal substructure of the Cartagena’s population, a total of 130 unrelated men were ancestrally studied using 15 Y-STR loci routinely employed in anthropological, forensic and population genetics. Our results show that Cartagena is an admixture population consisting of European (80%), Amerindian (10%) and African ancestries (10%), which are represented by haplogroups R1b and I2a (xI2a1), Q-M242/Q-M3, and E1b1a/E1b1b, respectively. Complex genetic patterns found in Cartagena’s population emphasize the importance to know the genetic variation in order to diminish the inconsistence for future genetic association studies. In addition, our findings illustrate the complex genetic background of Cartagena population and reinforce the need to encompass more geographic regions to generate more robust data for anthropological and forensic applications. 展开更多
关键词 POPULATION GENETICS Y-chromosome Microsatellites Cartagena Colombia
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Chromosome-level genome assembly of Cylas formicarius provides insights into its adaptation and invasion mechanisms
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作者 HUA Jin-feng ZHANG Lei +6 位作者 HAN Yong-hua GOU Xiao-wan CHEN Tian-yuan HUANG Yong-mei LI Yan-qing MA Dai-fu LI Zong-yun 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第3期825-843,共19页
Cylasformicarius is one of the most important pests of sweet potato worldwide, causing considerable ecological and economic damage.This study improved the effect of comprehensive management and understanding of geneti... Cylasformicarius is one of the most important pests of sweet potato worldwide, causing considerable ecological and economic damage.This study improved the effect of comprehensive management and understanding of genetic mechanisms by examining the functional genomics of C. formicarius.Using Illumina and PacBio sequencing, this study obtained a chromosome-level genome assembly of adult weevils from lines inbred for 15 generations.The high-quality assembly obtained was 338.84 Mb, with contig and scaffold N50 values of 14.97 and 34.23 Mb, respectively.In total, 157.51 Mb of repeat sequences and 11 907 protein-coding genes were predicted.A total of 337.06 Mb of genomic sequences was located on the 11 chromosomes, accounting for 99.03%of the total length of the associated chromosome.Comparative genomic analysis showed that C. formicarius was sister to Dendroctonus ponderosae, and C. formicarius diverged from D. ponderosae approximately 138.89 million years ago (Mya).Many important gene families expanded in the C. formicarius genome were involved in the detoxification of pesticides, tolerance to cold stress and chemosensory system.To further study the role of odorant-binding proteins (OBPs) in olfactory recognition of C. formicarius, the binding assay results indicated that Cfor OBP4–6 had strong binding affinities for sex pheromones and other ligands.The high-quality C. formicarius genome provides a valuable resource to reveal the molecular ecological basis, genetic mechanism, and evolutionary process of major agricultural pests;it also offers new ideas and new technologies for ecologically sustainable pest control. 展开更多
关键词 Cylas formicarius PacBio sequencing high-through chromosome conformation capture chromosome-level genome chemosensory genes fluorescence competitive binding
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Genetic effects of Agropyron cristatum 2P chromosome translocation fragments in a wheat background
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作者 XU Shi-rui JIANG Bo +7 位作者 HAN Hai-ming JI Xia-jie ZHANG Jin-peng ZHOU Sheng-hui YANG Xin-ming LI Xiu-quan LI Li-hui LIU Wei-hua 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第1期52-62,共11页
Agropyron cristatum(2n=4x=28,PPPP)is a wild relative of common wheat which contains a large number of desirable genes that can be exploited for wheat improvement.Wheat–A.cristatum 2P alien translocation lines exhibit... Agropyron cristatum(2n=4x=28,PPPP)is a wild relative of common wheat which contains a large number of desirable genes that can be exploited for wheat improvement.Wheat–A.cristatum 2P alien translocation lines exhibit many desirable traits,such as small flag leaves,a high spikelet number and density,and a compact plant type.An agronomic trait evaluation and a genetic analysis were carried out on translocation lines and backcross populations of these lines carrying different translocation fragments.The results showed that a translocation fragment from 2PT-3(2PL)reduced the length of the flag leaves,while translocation fragments from 2PT-3(2PL)and 2PT-5(2PL(0.60–1.00))reduced the width of the flag leaves.A translocation fragment from 2PT-13(2PS(0.18–0.36))increased the length and area of the flag leaves.Translocation fragments from 2PT-3(2PL)and 2PT-8(2PL(0.86–1.00))increased the density of spikelets.Translocation fragments from 2PT-7(2PL(0.00–0.09)),2PT-8(2PL(0.86–1.00)),2PT-10(2PS),and 2PT-13(2PS(0.18–0.36))reduced plant height.This study provides a scientific basis for the effective utilization of wheat–A.cristatum translocation lines. 展开更多
关键词 wheat-A.cristatum 2P chromosome translocation lines flag leaf spikelet density genetic effects
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Constructing Molecular Marker Linkage Maps of Chromosome 14Sh and 22Sh and QTL Mapping for Major Traits by Use of Substitution Lines of Gossypium hirsutum L.
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作者 SAHA Sukumar JENKINS Johnie N 《棉花学报》 CSCD 北大核心 2008年第S1期85-,共1页
CSB14Sh,which is isogenic for its recurrent parent TM-1 except for chromosome 14 short arm,was crossed with TM-1,and the F2 population was produced.A total of 3800 SSR primer pairs covering the whole genome were used ... CSB14Sh,which is isogenic for its recurrent parent TM-1 except for chromosome 14 short arm,was crossed with TM-1,and the F2 population was produced.A total of 3800 SSR primer pairs covering the whole genome were used to screen polymorphism among two parents,TM-1 and CSB14Sh, 展开更多
关键词 QTLs Constructing Molecular marker Linkage Maps of chromosome 14Sh and 22Sh and QTL Mapping for Major Traits by Use of Substitution Lines of Gossypium hirsutum L
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Identification of KASP markers and putative genes for pre-harvest sprouting resistance in common wheat(Triticum aestivum L.)
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作者 Guannan Liu Daniel Mullan +3 位作者 Aimin Zhang Hui Liu Dongcheng Liu Guijun Yan 《The Crop Journal》 SCIE CSCD 2023年第2期549-557,共9页
Common wheat(Triticum aestivum L.)is the most important crop in the world and a typical allopolyploid with a large and complex genome.Pre-harvest sprouting(PHS)leads to a significant reduction in grain quality worldwi... Common wheat(Triticum aestivum L.)is the most important crop in the world and a typical allopolyploid with a large and complex genome.Pre-harvest sprouting(PHS)leads to a significant reduction in grain quality worldwide.PHS is a complex trait with related QTL located on different chromosomes.However,the study of markers and genes related to PHS resistance is limited especially for whitegrained wheat.Four pairs of near isogenic lines(NILs)from a white-grained wheat cross of CharaDM5637B*8 targeting a major QTL for PHS resistance(Qphs.ccsu-3A.1)on wheat chromosme 3AL were genotyped using the 90K SNP Illumina iSelect array.Ten SNPs were identified,with a 75%-100%consistency between genotype and phenotype in the resistant or susceptible isolines.The 10 SNPs were converted to cost-effective kompetitive allele-specific PCR(KASP)markers.Screening of 48 wheat cultivars with different phenotypes of PHS identified four KASP markers with 81.3%-85.4%conformity between genotype and phenotype.Further investigation revealed that the four SNPs(BS00022245_51,Kukri_c49927_151,BS00022884_51 and BS00110550_51)corresponding to the four validated KASP markers are residing in three independent genes(TraesCS3A03G1072800,TraesCS3A03G1072400,TraesCS3A03G1071800)close to each other with a distance of 4.28-4.48 Mb to the targeted QTL.These three annotated genes have potential functions related to PHS resistance.Our study revealed that combined use of NILs and the 90K SNP chip is a powerful approach for developing KASP markers and mining functional genes in wheat.The KASP markers for PHS resistance on chromosome 3AL are useful for high-throughput evaluation and marker-assisted selection,and the three identified genes could lead to a better understanding of the genetic pathways controlling PHS. 展开更多
关键词 Pre-harvest sprouting(PHS) KASP marker Functional genes chromosome 3AL 90K SNP assay Near-isogenic lines
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45,X/47,XYY性发育异常一例并文献复习 被引量:2
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作者 田文艳 罗营 +4 位作者 李小燕 颜琪 薛凤霞 王颖梅 张慧英 《国际生殖健康/计划生育杂志》 CAS 2024年第1期11-16,共6页
45,X/47,XYY性发育异常是一种由于罕见的染色体异常导致的性发育异常疾病。报告1例收治的45,X/47,XYY嵌合型性发育异常患者,该患者主因原发性闭经并出现男性化表现就诊,具有特纳综合征(Turner syndrome,Turner综合征)的表现,腹腔镜探查... 45,X/47,XYY性发育异常是一种由于罕见的染色体异常导致的性发育异常疾病。报告1例收治的45,X/47,XYY嵌合型性发育异常患者,该患者主因原发性闭经并出现男性化表现就诊,具有特纳综合征(Turner syndrome,Turner综合征)的表现,腹腔镜探查显示一侧性腺为条索状,另一侧外观睾丸样,病理为卵睾型性腺,手术切除双侧附件并予人工周期治疗,有月经来潮。结合本例及检索到的文献报道的女性表型中因原发性闭经就诊的病例共11例,对该病的临床表现、诊断及治疗方式进行总结。女性表型45,X/47,XYY性发育异常患者临床表现多样,以Turner综合征表现合并男性化表现多见,应尽早发现并切除发育不良的性腺,防止性腺肿瘤的发生和男性化表现出现。术后进行长期激素替代治疗,同时注重患者精神心理的疏导。 展开更多
关键词 性发育障碍 嵌合体 性染色体畸变 性腺发育不全 混合性 泌尿生殖系统畸形 特纳综合征 激素替代疗法
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六倍体小黑麦×六倍体小麦杂交后代中染色体遗传与结构变异鉴定
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作者 杨漫宇 姚方杰 +1 位作者 杨足君 杨恩年 《遗传》 CAS CSCD 北大核心 2024年第1期63-77,共15页
六倍体小黑麦是普通小麦品种遗传改良的重要基因资源,可以拓宽小麦的遗传基础。本研究以六倍体小黑麦为供体向普通小麦转移黑麦染色质,以探明六倍体小黑麦×六倍体小麦杂交、回交后代的染色体遗传特性,为小黑麦种质材料的后续研究... 六倍体小黑麦是普通小麦品种遗传改良的重要基因资源,可以拓宽小麦的遗传基础。本研究以六倍体小黑麦为供体向普通小麦转移黑麦染色质,以探明六倍体小黑麦×六倍体小麦杂交、回交后代的染色体遗传特性,为小黑麦种质材料的后续研究和利用奠定基础。以六倍体小黑麦16引171为母本,六倍体小麦川麦62为父本配制杂交及回交组合,利用非变性荧光原位杂交技术(non-denaturing florescence in situ hybridization,ND-FISH)对F1、BC1F1和BC1F2植株进行细胞学跟踪鉴定。结果表明,杂种F1回交结实率为2.61%;BC1F1植株2R染色体传递频率最高;BC1F2植株中黑麦染色体在后代的传递率为6R>4R>2R,小麦背景中5B-7B相互易位染色体在BC1F2植株中表现出严重偏分离。在BC1F1和BC1F2植株中观察到24种结构变异染色体,包括染色体片段、等臂易位染色体、易位染色体以及双着丝粒染色体,且部分BC1F2植株的种子表现粒长和千粒重均优于六倍体小麦亲本川麦62。因此,在利用六倍体小黑麦作为桥梁向普通小麦导入黑麦遗传物质时,应尽量采取多次回交的方式,使D组染色体迅速恢复,保证后代育性的恢复,同时关注染色体结构变异材料的潜在应用价值。 展开更多
关键词 六倍体小黑麦 六倍体小麦 染色体遗传 ND-FISH 染色体结构变异
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388例骨骼发育异常胎儿遗传学分析
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作者 玉晋武 欧阳鲁平 +4 位作者 黄朋 苏家荪 杨祚建 易赏 罗静思 《生殖医学杂志》 CAS 2024年第6期739-744,共6页
目的分析骨骼发育异常胎儿的遗传学因素,探讨其在骨骼发育异常胎儿中的作用。方法选择2016年1月至2022年12月于广西壮族自治区妇幼保健院进行产前检查的388例超声检查提示骨骼发育异常或合并其他结构异常的胎儿为研究对象。回顾性分析38... 目的分析骨骼发育异常胎儿的遗传学因素,探讨其在骨骼发育异常胎儿中的作用。方法选择2016年1月至2022年12月于广西壮族自治区妇幼保健院进行产前检查的388例超声检查提示骨骼发育异常或合并其他结构异常的胎儿为研究对象。回顾性分析388例胎儿的临床资料,比较其染色体核型分析与单核苷酸多态性微阵列(SNP-array)的检测结果。结果388例胎儿骨骼发育异常产前样本中,染色体核型分析结果发现异常20例,异常检出率为5.2%(20/388);SNP-array检出异常56例,异常检出率为14.4%(56/388)。在SNP-array检出的56例异常胎儿中,有19例胎儿的染色体核型分析结果为异常,其余37例胎儿核型正常。这37例正常核型胎儿中有12例为致病性拷贝数变异(CNVs),检出率为3.1%(12/388);另外25例为临床意义不明性CNVs。结论当超声检查提示胎儿骨骼发育异常时,胎儿可能存在染色体异常,建议行介入性产前诊断,以明确胎儿是否存在致病性基因缺陷,为临床遗传咨询提供更多参考依据。 展开更多
关键词 骨骼发育异常 染色体异常 染色体核型分析 单核苷酸多态性微阵列 遗传学分析
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等臂双着丝粒Y染色体胎儿的产前诊断、遗传咨询与随访
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作者 郭彩琴 赵丽 +4 位作者 肖建平 杨岚 唐叶 刘俊 赵馨 《临床儿科杂志》 CAS CSCD 北大核心 2024年第1期46-52,共7页
目的分析5例等臂双着丝粒Y染色体[idic(Y)]胎儿的产前诊断、遗传咨询与随访结果,为idic(Y)胎儿的临床处理提供参考依据。方法选择2018年1月至2022年8月7347例有产前诊断指征的孕妇,采用常规G显带核型及染色体微阵列分析(CMA)技术检测胎... 目的分析5例等臂双着丝粒Y染色体[idic(Y)]胎儿的产前诊断、遗传咨询与随访结果,为idic(Y)胎儿的临床处理提供参考依据。方法选择2018年1月至2022年8月7347例有产前诊断指征的孕妇,采用常规G显带核型及染色体微阵列分析(CMA)技术检测胎儿羊水,并用荧光原位杂交(FISH)技术验证,亲代染色体核型溯源检测。遗传咨询后跟踪随访妊娠结局。结果共诊断新发的idic(Y)胎儿5例,其中例1胎儿为单纯的idic(Yq),例2~5均为idic(Yq)与X单体的嵌合体。产前超声提示5例胎儿均为男性,除例1胎儿伴双侧马蹄内翻足可能外,其余4例均未见明显结构畸形。结合超声结果并予以个性化咨询后,例1~2选择继续妊娠,例3~5均终止妊娠。随访例1患儿至4周岁,足内翻手术效果良好,轻度发育迟缓经康复训练后好转;随访例2患儿至2周岁,暂未见异常表型;例3已再次受孕并分娩1名健康女婴;例4~5仍在备孕中。结论细胞与分子遗传学技术的联合应用有助于产前诊断idic(Y)胎儿,合理的遗传咨询及长期随访可为其后续的临床诊疗提供重要依据。 展开更多
关键词 等臂双着丝粒Y染色体 产前诊断 遗传咨询
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884例性染色体异常胎儿产前诊断结果分析
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作者 杨微微 姚立英 +4 位作者 任晨春 王文靖 张海霞 李雯 李博 《检验医学》 CAS 2024年第2期149-154,共6页
目的 对884例无创产前筛查(NIPS)提示性染色体异常的羊水样本进行核型分析、荧光原位杂交技术(FISH)和拷贝数变异测序(CNV-seq)检测,探讨不同方法在产前诊断中的价值。方法 选取2015年1月—2022年12月天津市中心妇产科医院孕早期NIPS提... 目的 对884例无创产前筛查(NIPS)提示性染色体异常的羊水样本进行核型分析、荧光原位杂交技术(FISH)和拷贝数变异测序(CNV-seq)检测,探讨不同方法在产前诊断中的价值。方法 选取2015年1月—2022年12月天津市中心妇产科医院孕早期NIPS提示胎儿为性染色体异常的孕妇884例,于孕中期采集羊水样本,进行羊水细胞核型分析和FISH检测,对结果不一致或培养失败的样本进一步行CNV-seq检测。结果 884例孕妇中,有341例(38.6%)检出异常核型,11例(1.2%)羊水细胞培养失败。NIPS性染色体阳性预测值为39.2%(341/873)。341例核型分析异常样本中,最常见的核型异常类型是47,XXY(108例),其次为47,XXX(80例)、47,XYY(68例)、45,X(18例),共检出51例嵌合体。884例孕妇中,有862例FISH检测结果与核型分析或CNV-seq结果一致,FISH的阳性预测值为97.5%;24例与核型分析结果不一致,进一步行CNV-seq检测,有22例CNV-seq结果与核型分析结果一致,并能相互补充分析;2例不一致样本中,1例核型分析结果为46,~+mar,FISH和CNV-seq结果均为45,X;1例核型分析结果为嵌合Y染色体异染色质区缺失,FISH和CNV-seq结果均为嵌合体,结构未见异常。结论 NIPS提示性染色体异常时,建议首选FISH和核型分析联合检测,可快速、准确地诊断染色体异常。对于疑似染色体特殊结构异常,建议进行FISH、核型分析和CNV-seq联合检测,可明确遗传学病因。 展开更多
关键词 无创产前筛查 染色体核型分析 荧光原位杂交技术 拷贝数变异测序 性染色体异常 产前诊断
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