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基于荧光原位杂交(FISH)技术的假俭草染色体鉴定和核型分析
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作者 李建建 王浩然 +4 位作者 张源 徐夕雯 李晓慧 张苓 郭海林 《植物资源与环境学报》 北大核心 2025年第1期33-41,共9页
以假俭草(Eremochloa ophiuroides(Munro)Hack.)品种‘赣北’(‘Ganbei’)基因组序列数据为基础,通过生物信息学手段挖掘和设计了假俭草染色体特异的单拷贝寡核苷酸(oligo)探针库,同时结合端粒重复序列和rDNA重复序列探针,在假俭草根尖... 以假俭草(Eremochloa ophiuroides(Munro)Hack.)品种‘赣北’(‘Ganbei’)基因组序列数据为基础,通过生物信息学手段挖掘和设计了假俭草染色体特异的单拷贝寡核苷酸(oligo)探针库,同时结合端粒重复序列和rDNA重复序列探针,在假俭草根尖细胞有丝分裂中期染色体上进行了系列荧光原位杂交(FISH)试验。结果显示:假俭草染色体核型公式为2n=2x=18(2SAT),利用5S rDNA和18S rDNA重复序列探针可识别出第5和第4号染色体,且第4号染色体18S rDNA富集区段易出现或存在断裂现象;设计的假俭草染色体特异单拷贝oligo探针可识别出第2、第6和第9号染色体,进一步结合rDNA重复序列探针结果还发现第4号染色体与第8号染色体间发生了染色体易位。综合分析认为,假俭草染色体核型存在不稳定性,且其基因组在进化过程中发生了染色体结构重排。本研究建立的基于重复序列和单拷贝oligo探针的FISH技术体系,可为假俭草染色体的准确识别和变异鉴定提供新方法,观察到的假俭草染色体核型特征可为假俭草高质量基因组图谱的构建提供细胞学证据。 展开更多
关键词 假俭草 染色体 重复序列 寡核苷酸(oligo) 荧光原位杂交(fish) 核型分析
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Acellular fish skin grafts in diabetic foot ulcer care:Advances and clinical insights
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作者 Yu Zhao Quan-Quan Shen 《World Journal of Diabetes》 SCIE 2025年第1期34-38,共5页
Diabetic foot ulcers(DFUs)represents a significant public health issue,with a rising global prevalence and severe potential complications including amputation.Traditional treatments often fall short due to various lim... Diabetic foot ulcers(DFUs)represents a significant public health issue,with a rising global prevalence and severe potential complications including amputation.Traditional treatments often fall short due to various limitations such as high recurrence rates and extensive resource utilization.This editorial explores the innovative use of acellular fish skin grafts as a transformative approach in DFU management.Recent studies and a detailed case report highlight the efficacy of acellular fish skin grafts in accelerating wound closure,reducing dressing changes,and enhancing patient outcomes with a lower socio-economic burden.Despite their promise,challenges such as limited availability,patient acceptance,and the need for further research persist.Addressing these through more extensive randomized controlled trials and fostering a multidisciplinary treatment approach may optimize DFU care and reduce the global health burden associated with these complex wounds. 展开更多
关键词 Diabetic foot ulcer Acellular matrix tissues Acellular fish skin grafts Wound healing Bioengineered materials
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Association between Fish Consumption and Stroke Incidence Across Different Predicted Risk Populations:A Prospective Cohort Study from China
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作者 Hongyue Hu Fangchao Liu +13 位作者 Keyong Huang Chong Shen Jian Liao Jianxin Li Chenxi Yuan Ying Li Xueli Yang Jichun Chen Jie Cao Shufeng Chen Dongsheng Hu Jianfeng Huang Xiangfeng Lu Dongfeng Gu 《Biomedical and Environmental Sciences》 2025年第1期15-26,共12页
Objective The relationship between fish consumption and stroke is inconsistent,and it is uncertain whether this association varies across predicted stroke risks.Methods A cohort study comprising 95,800 participants fr... Objective The relationship between fish consumption and stroke is inconsistent,and it is uncertain whether this association varies across predicted stroke risks.Methods A cohort study comprising 95,800 participants from the Prediction for Atherosclerotic Cardiovascular Disease Risk in China project was conducted.A standardized questionnaire was used to collect data on fish consumption.Participants were stratified into low-and moderate-to-high-risk categories based on their 10-year stroke risk prediction scores.Hazard ratios(HRs)and 95%confidence intervals(CIs)were estimated using Cox proportional hazard models and additive interaction by relative excess risk due to interaction(RERI),attributable proportion(AP),and synergy index(SI).Results During 703,869 person-years of follow-up,2,773 incident stroke events were identified.Higher fish consumption was associated with a lower risk of stroke,particularly among moderate-to-high-risk individuals(HR=0.53,95%CI:0.47-0.60)than among low-risk individuals(HR=0.64,95%CI:0.49-0.85).A significant additive interaction between fish consumption and predicted stroke risk was observed(RERI=4.08,95%CI:2.80-5.36;SI=1.64,95%CI:1.42-1.89;AP=0.36,95%CI:0.28-0.43).Conclusion Higher fish consumption was associated with a lower risk of stroke,and this beneficial association was more pronounced in individuals with moderate-to-high stroke risk. 展开更多
关键词 fish consumption STROKE Predicted stroke risk Cohort study INTERACTION
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基于FISH和GISH技术的芝麻栽培种和野生种染色体组特征比较分析
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作者 马琴 赵瑞红 +5 位作者 琚铭 陈成彬 段迎辉 杨伟飞 苗红梅 张海洋 《河南农业科学》 北大核心 2024年第10期48-53,共6页
为揭示胡麻属物种进化特征,探究胡麻属基因组结构演变及物种进化,促进野生资源的开发利用,以芝麻栽培种豫芝11号和2n=26类型野生种S.alatum 3651为试验材料,采用荧光原位杂交(FISH)和基因组荧光原位杂交(GISH)技术对芝麻栽培种和野生种... 为揭示胡麻属物种进化特征,探究胡麻属基因组结构演变及物种进化,促进野生资源的开发利用,以芝麻栽培种豫芝11号和2n=26类型野生种S.alatum 3651为试验材料,采用荧光原位杂交(FISH)和基因组荧光原位杂交(GISH)技术对芝麻栽培种和野生种染色体组特征进行分析。结果表明,芝麻栽培种和野生种均为2n=2x=26类型;rDNA-FISH杂交结果显示,栽培种的13对染色体中,3对染色体(第7、8、9对染色体)的短臂端部携带45S rDNA特异信号,显示为随体特异染色体;2对染色体(第5、11对染色体)的短臂携带5S rDNA特异信号,5S rDNA与45S rDNA信号位于不同染色体上。野生种的13对染色体中,有2对染色体(第4、7对染色体)携带45S rDNA杂交信号,1对染色体(第4对染色体)携带5S rDNA特异信号,5S rDNA与45S rDNA信号位于同一染色体不同位置,表明栽培种与野生种的染色体组特征差异较大。GISH杂交结果显示,分别以栽培种和野生种的基因组DNA作探针与自身染色体杂交,每条染色体上携带不同强弱的杂交信号,而与对方染色体杂交,均表现出极少的杂交信号。芝麻栽培种和野生种具有相同的染色体数目,但染色体rDNA数量、分布及其GISH信号均存在明显差异,说明栽培种和野生种亲缘关系较远。 展开更多
关键词 芝麻 栽培种 野生种S.alatum 染色体组 rDNA 荧光原位杂交(fish) 基因组荧光原位杂交(GISH)
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尿脱落细胞FISH单染色体拷贝大量异常分析
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作者 汤永飞 何惠华 +3 位作者 阎红琳 刘琳 袁静萍 钱红 《临床与实验病理学杂志》 CAS 北大核心 2024年第4期436-438,441,共4页
目的探讨尿脱落细胞FISH单染色体拷贝大量异常病例的FISH检测结果特点与最终活检病理结果的相关性,进一步完善FISH阳性诊断标准。方法收集847例行尿脱落细胞FISH检测,选择其中不符合阳性标准、但存在大量单染色体拷贝的5例作为研究对象... 目的探讨尿脱落细胞FISH单染色体拷贝大量异常病例的FISH检测结果特点与最终活检病理结果的相关性,进一步完善FISH阳性诊断标准。方法收集847例行尿脱落细胞FISH检测,选择其中不符合阳性标准、但存在大量单染色体拷贝的5例作为研究对象,分析它们的临床特征、FISH检测结果特点、脱落细胞学特征和活检组织病理学检测结果。结果观察相应区域100个核异质上皮细胞,例1显示3号染色体3倍体扩增,异常细胞数32个;例2显示17号染色体3倍体扩增,异常细胞数48个;例3显示17号染色体5倍体扩增,异常细胞数56个;例4显示17号染色体单倍体,异常细胞数67个;例5显示p16基因杂合子缺失,异常细胞数61个,其它染色体均无异常。5例活检病理结果均为低级别或高级别乳头状尿路上皮癌。结论在临床实践中,尿脱落细胞FISH单染色体拷贝大量异常的病例应引起重视,将其归入可疑阳性比较合适,从而能提高尿FISH检测的敏感性,使患者获益。 展开更多
关键词 尿路上皮癌 尿脱落细胞 fish
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多基因组合FISH检测技术在黑色素瘤诊断中的应用价值及质控要点分析
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作者 范晓杰 贾迎 刘月平 《临床与实验病理学杂志》 CAS 北大核心 2024年第10期1088-1091,共4页
目的探讨FISH技术在黑色素瘤诊断中的应用价值及质控要点。方法应用黑色素瘤多基因组合FISH检测试剂盒,对109例色素样本中的6个基因位点(MYB、RREB1、PTEN、MYC、CDKN2A和CCND1)进行检测,分析FISH检测阳性病例的临床病理特征。结果黑色... 目的探讨FISH技术在黑色素瘤诊断中的应用价值及质控要点。方法应用黑色素瘤多基因组合FISH检测试剂盒,对109例色素样本中的6个基因位点(MYB、RREB1、PTEN、MYC、CDKN2A和CCND1)进行检测,分析FISH检测阳性病例的临床病理特征。结果黑色素瘤中的6个基因位点FISH阳性率均显著高于良性黑色素细胞痣(P<0.05)。88例黑色素瘤多基因组合FISH检测结果与各项临床病理特征相关性分析结果显示,不同黑色素瘤组织类型病例中同时3个及以上探针(≥3个探针)FISH阳性比例差异有统计学意义,其中结节型最高(100%),肢端雀斑样次之(96.43%),表浅播散型较低(82.35%)。Breslow厚度>2.0 mm病例中≥3个探针FISH阳性比率显著高于Breslow厚度≤2.0 mm病例。黑色素瘤样本的FISH质控关键点是组织固定:黑色素瘤组织FISH备片2.5~3μm厚为宜;若色素影响严重,可做单种绿色信号判读加其他检测方式辅助诊断。结论FISH检测6个基因位点对黑色素瘤辅助诊断具有重要价值;应严格进行黑色素瘤样本FISH技术的质量控制。 展开更多
关键词 黑色素瘤 fish 多基因组合 质量控制 辅助诊断
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FISH技术检测乳腺癌HER2基因的质控要点
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作者 申敬伟 董芳莉 杨海军 《诊断病理学杂志》 2024年第9期934-935,共2页
目的探讨FISH技术检测乳腺癌HER2基因的质控要点。方法收集2022年6月至2023年6月安阳市肿瘤医院病理科乳腺癌HER2 FISH检测样本208例。4例样本检测不合格需重新制片进行HER2 FISH检测,对比前后检测效果。结果4例样本重新制片后在荧光显... 目的探讨FISH技术检测乳腺癌HER2基因的质控要点。方法收集2022年6月至2023年6月安阳市肿瘤医院病理科乳腺癌HER2 FISH检测样本208例。4例样本检测不合格需重新制片进行HER2 FISH检测,对比前后检测效果。结果4例样本重新制片后在荧光显微镜下显示细胞核内杂交信号清晰,双色信号,背景干净。结论制定和完善FISH技术检测乳腺癌HER2基因的质控要点是保证FISH检测结果的准确性、可靠性和及时性的前提。 展开更多
关键词 乳腺癌 fish技术 HER2基因 质量控制
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Study of the Multidrug Resistance of Enterobacteria Isolated from Waters and Tilapia Fishes from Fish Farms in the Sud-Comoé Region, Côte d’Ivoire
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作者 Affou Séraphin Wognin Aubin Cyrille Toulé +2 位作者 Amoin Elise N’guessan Nangan Michel Koné Natalie Kouadio-Guessennd 《Advances in Microbiology》 CAS 2024年第11期567-577,共11页
Microbial resistance to antibiotics is a global problem that threatens the lives of millions of people and affects several sectors, including aquaculture. The aim of the present study is to contribute to the monitorin... Microbial resistance to antibiotics is a global problem that threatens the lives of millions of people and affects several sectors, including aquaculture. The aim of the present study is to contribute to the monitoring of multi-resistant enterobacterial strains circulating in fish ponds in the Sud-Comoé region of south-eastern Côte d’Ivoire, more specifically in the Aboisso and Tiapoum departments. To this end, 20 samples of Tilapia fish (Oreochromis niloticus) and 60 samples of farm water were collected from 5 fish farms in the Sud-Comoé region. Microbiological analyses were based on the isolation and identification of enterobacteria on Mac Conkey + Ceftazidime medium. These analyses resulted in the isolation of 73 strains of enterobacteria, including 58 from fish and 15 from fish pond water samples. Antibiotic sensitivity tests carried out on enterobacteria isolated from water and fish samples showed high levels of resistance (100%) to the beta-lactam family (Amoxicilin + clavulanic acid, Ceftazidime). Klebsiella pneumoniae and Enterobacter spp. showed resistance to Ciprofloxacins (100%) and (25%) respectively. The study also showed that strains of Enterobacteriaceae were resistant to all 3 families of antibiotics, notably Beta-lactams, Fluoro-quinolones and Aminosides. The presence of multi-resistant Enterobacteriaceae in fish and pond water samples represents a public health risk. 展开更多
关键词 Multidrug Resistance ENTEROBACTERIACEAE Tilapia fish fishPONDS
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Goldfish——An Amazing Animal
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作者 曲伟凡 张超(指导) 《中学生英语》 2024年第39期7-7,共1页
The goldfish is a cute and amazing animal.Most of the children like them.They can't live without water.They need to sleep.They sleep with their eyes open.Some of them usually sleep in the daytime while others like... The goldfish is a cute and amazing animal.Most of the children like them.They can't live without water.They need to sleep.They sleep with their eyes open.Some of them usually sleep in the daytime while others like sleeping at night.They can't eat too much at a time.Goldfish are not only beautiful,but also very clever. 展开更多
关键词 fish GOLDfish BEAUTIFUL
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IHC与FISH在乳腺癌HER2蛋白表达和基因扩增检测中的应用 被引量:1
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作者 李小欢 张青 +2 位作者 张春蕾 徐子贻 袁小林 《标记免疫分析与临床》 CAS 2024年第3期550-553,共4页
目的比较免疫组织化学法(immunohistochemisity,IHC)和荧光原位杂交法(fluorescence in situ hybridization,FISH)在乳腺癌患者中检测人表皮生长因子受体2(human epidermal growth factor receptor 2,HER2)的应用。方法2019年2月至2022... 目的比较免疫组织化学法(immunohistochemisity,IHC)和荧光原位杂交法(fluorescence in situ hybridization,FISH)在乳腺癌患者中检测人表皮生长因子受体2(human epidermal growth factor receptor 2,HER2)的应用。方法2019年2月至2022年1月本院收治158例乳腺癌患者作为研究对象,均采用IHC和FISH检测HER2的蛋白表达和基因扩增情况,比较两种方法的检测结果和一致性。结果IHC结果显示158例患者中HER2(1+)、HER2(2+)、HER2(3+)分别为5例(3.16%)、97例(61.39%)、56例(35.44%),FISH结果显示HER2扩增73例(46.20%),未扩增85例(53.80%),其中,HER2(1+)患者FISH均显示未扩增,阴性符合率为100%;HER2(3+)患者FISH均显示扩增,阳性符合率为100%;97例HER2(2+)患者FISH显示扩增17例,阳性符合率为17.52%。两种方法检测HER2一致性较好且具有统计学意义(Kappa值=0.775,P<0.05)。结论HIC与FISH在乳腺癌患者HER2表达检测中一致性较好,可在临床推广使用,必要时需结合两种方法检测。 展开更多
关键词 乳腺癌 人表皮生长因子受体2 荧光原位杂交法 免疫组织化学法
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Status and historical changes in the fish community in Erhai Lake 被引量:8
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作者 唐剑锋 叶少文 +5 位作者 李为 刘家寿 张堂林 郭志强 朱峰跃 李钟杰 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2013年第4期712-723,共12页
Erhai Lake is the second largest freshwater lake on the Yunnan Plateau, Southwest China. In recent decades, a number of exotic fish species have been introduced into the lake and the fish community has changed conside... Erhai Lake is the second largest freshwater lake on the Yunnan Plateau, Southwest China. In recent decades, a number of exotic fish species have been introduced into the lake and the fish community has changed considerably. We evaluated the status of the fish community based on surveys with multimesh gillnet, trap net, and benthic fyke-net between May 2009 and April 2012. In addition, we evaluated the change in the community using historical data (1952-2010) describing the fish community and fishery harvest. The current fish community is dominated by small-sized fishes, including Pseudorasbora parva, Rhinogobius giurinus, Micropercops swinhonis, Hemiculter leucisculus, and Rhinogobius cliffordpopei. These accounted for 87.7% of the 22 546 total specimens collected. Omnivorous and carnivorous species dominated the community. A canonical correspondence analysis (CCA) plot revealed that the distribution of fishes in the lake is influenced by aquatic plants, water temperature, pH, and season. The abundance of indigenous species has declined sharply, and a majority of endemic species have been extirpated from the lake (a decrease from seven to two species). In contrast, the number of exotic species has increased since the 1960s to a total of 22 at present. The fishery harvest decreased initially following the 1960s, but has since increased due to the introduction of non-native fish and stocking of native fish. The fishery harvest was significantly correlated with total nitrogen, not total phosphorus, during the past 20 years. Based on our results, we discuss recommendations for the restoration and conservation of the fish resources in Erhai Lake. 展开更多
关键词 Erhai Lake fish community small fishes indigenous fish species exotic fish species
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An innovative classification system for ranking the biological effects of marine aromatic hydrocarbons based on fish embryotoxicity 被引量:1
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作者 Ronghui Zheng Chao Fang +4 位作者 Fukun Hong Min Zhang Fulong Gao Yusheng Zhang Jun Bo 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2024年第6期153-162,共10页
Petroleum hydrocarbon pollution is a global concern,particularly in coastal environments.Polycyclic aromatic hydrocarbons(PAHs) are regarded as the most toxic components of petroleum hydrocarbons.In this study,the bio... Petroleum hydrocarbon pollution is a global concern,particularly in coastal environments.Polycyclic aromatic hydrocarbons(PAHs) are regarded as the most toxic components of petroleum hydrocarbons.In this study,the biomonitoring and ranking effects of petroleum hydrocarbons and PAHs on the marine fish model Oryzias melastigma embryos were determined in the Jiulong River Estuary(JRE) and its adjacent waters in China.The results showed that the levels of petroleum hydrocarbons from almost all sites met the primary standard for marine seawater quality,and the concentrations of the 16 priority PAHs in the surface seawater were lower compared with those in other coastal areas worldwide.A new fish expert system based on the embryotoxicity of O.melastigma(OME-FES) was developed and applied in the field to evaluate the biological effects of petroleum hydrocarbons and PAHs.The selected physiological index and molecular indicators in OME-FES were appropriate biomarkers for indicating the harmful effects of petroleum hydrocarbons and PAHs.The outcome of OME-FES revealed that the biological effect levels of the sampling sites ranged from level Ⅰ(no stress) to level Ⅲ(medium stress),which is further corroborated by the findings of nested analysis of variance(ANOVA) models.Our results suggest that the OME-FES is an effective tool for evaluating and ranking the biological effects of marine petroleum hydrocarbons and PAHs.This method may also be applied to evaluate other marine pollutants based on its framework. 展开更多
关键词 petroleum hydrocarbons polycyclic aromatic hydrocarbons fish expert system integrated biomarker response nested one-way analysis of variance
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Translocation of a fish spike from the pharynx to the thyroid gland:A case report 被引量:1
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作者 Deng Li Wan-Ting Zeng +1 位作者 Jian-Guo Jiang Ji-Chuan Chen 《World Journal of Clinical Cases》 SCIE 2024年第7期1365-1370,共6页
BACKGROUND A fish spike stuck in the throat is a common ear,nose,and throat(ENT)emergency.However,it is very rare for a fish spike to reach the thyroid tissue through the throat,which is very dangerous and can lead to... BACKGROUND A fish spike stuck in the throat is a common ear,nose,and throat(ENT)emergency.However,it is very rare for a fish spike to reach the thyroid tissue through the throat,which is very dangerous and can lead to pharyngeal fistula,cervical abscess,mediastinal abscess,and thyroid abscess.Proper and timely management can help reduce complications,especially in elderly patients.CASE SUMMARY In the case presented here,the causative factor was dentures,but improper management aggravated the condition.In the case presented here,an elderly woman with a history of accidentally swallowing fish bones for 20 d had a sensation of foreign bodies in her throat.Eventually,computed tomography(CT)of the neck showed that the left side of the thyroid gland had a dense shadow in the form of a stripe.CONCLUSION If a fishbone foreign body is not visible during endoscopic examination but the patient has significant symptoms,the surgeon should be aware that the fishbone may be lodged in the thyroid.To avoid a misdiagnosis,ultrasound,CT,and other tests can be used to clarify the diagnosis.T The first step in treating a fish bone in the thyroid gland is to determine the position of the foreign body and the extent of the infection,and to develop a personalized surgical plan for its removal.At the same time,scientific information should be made available to the general public so that people know that if a fish bone is accidentally lodged,they should not force it to be swallowed or be spit out by inducing vomiting,which are incorrect methods and may aggravate the condition or even cause it to migrate outside the cavity,leading to serious complications,as in this reported case. 展开更多
关键词 fish spike THYROID PHARYNX Foreign body migration Case report
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Assessment of the Characteristics of Demersal Fish Communities Using Species-and Trait-Based Approaches in the Coastal Habitats Along Rongcheng Bay,Shandong Peninsula,China
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作者 YUAN Shunjie SUN Xin +3 位作者 TU Zhong SUN Jie WANG Xianning ZHANG Peidong 《Journal of Ocean University of China》 SCIE CAS CSCD 2024年第3期786-796,共11页
Biodiversity declines have motivated many studies on the relationship between species diversity and ecosystem functioning.In this study,we described the spatial-temporal characteristics of demersal fish communities al... Biodiversity declines have motivated many studies on the relationship between species diversity and ecosystem functioning.In this study,we described the spatial-temporal characteristics of demersal fish communities along a coastal habitat in Rongcheng Bay,Shandong Peninsula,China with both species-based and biological trait-based approaches.The field survey was carried out monthly using traps from April to October of 2018,and divided into three seasons(spring:April and May;summer:June,July and August;autumn:September,October and November).The study area included five distinct habitats:seagrass bed,natural rocky reef,bare sand,artificial reef together with natural rocky reef,and artificial reef together with bare sand.We analyzed the fish communities with three taxonomic diversity indices,including Shannon-Wiener,Simpson,and Pielou Evenness,as well as four functional diversity indices,including FRic,FEve,FDiv,and FDis,based on 7 functional groups which are categorized into 27 traits.The results showed that there were no significant differences in taxonomic diversity indices among different habitats in the three seasons.However,significant differences were found in the functional richness of fish communities among different habitats in three seasons.Seagrass bed represented the highest functional richness in spring and autumn.This study demonstrates that seagrass bed is very important in enhancing the functional diversity of fish communities in a complex habitat.The study also indicates that the combination of taxonomic diversity and functional diversity will provide a more detailed description of the characteristics of fish communities. 展开更多
关键词 complex habitat biological traits BIODIVERSITY fish communities
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Comparison of fish communities using environmental DNA metabarcoding and capture methods in a plateau Erhai Lake,China
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作者 Hong CHEN Wanchao HE +4 位作者 Fenge YANG Li LIAO Chengjie YIN Yushun CHEN Longgen GUO 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第5期1597-1608,共12页
Environmental DNA(eDNA)has been used as an important tool for fish diversity analysis,which can greatly solve the problems in traditional survey methodology.However,little work has been done on the actual monitoring a... Environmental DNA(eDNA)has been used as an important tool for fish diversity analysis,which can greatly solve the problems in traditional survey methodology.However,little work has been done on the actual monitoring accuracy of eDNA.In this study,we analyzed the current status of fish resources in Erhai Lake in Yunnan,SW China,by dividing the lake into three sectors according to habitat differences,and compared the results of eDNA and traditional capture methods to investigate the shortcomings of the current analysis of eDNA results.A total of 27 fish species were detected by eDNA and traditional capture methods,including 20 and 19 fish species,respectively,and additional differences in fish composition between the two methods.The alpha diversity showed higher fish abundance and lower fish diversity by eDNA method compared to the traditional capture method,demonstrating that eDNA was not superior for use in fish diversity analysis.Fish community similarity analysis showed that community differences were generally significant for eDNA(P<0.05).RDA analysis indicated that environmental factors did not significantly affect fish communities monitored by the eDNA method.However,water temperature,aquatic plants,and water depth had significant(P<0.05)effects on fish communities in the traditional capture method,suggesting that eDNA results are insensitive to the effects of environmental factors.Our results illustrate the effectiveness of eDNA in fish identification and the issues in quantification compared to traditional capture methods.Therefore,combining eDNA with traditional methods is a more effective method for analyzing eDNA metabarcoding,following which the protocols of both quantitative methods can be designed to explore the regularity of eDNA quantification. 展开更多
关键词 environmental DNA traditional capture method fish communities habitat differences Erhai Lake
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Debaryomyces hansenii supplementation in low fish meal diets promotes growth,modulates microbiota and enhances intestinal condition in juvenile marine fish
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作者 Ignasi Sanahuja Alberto Ruiz +9 位作者 Joana P.Firmino Felipe E.Reyes-López Juan B.Ortiz-Delgado Eva Vallejos-Vidal Lluis Tort Dariel Tovar-Ramírez Isabel M.Cerezo Miguel A.Moriñigo Carmen Sarasquete Enric Gisbert 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2024年第1期253-276,共24页
Background The development of a sustainable business model with social acceptance,makes necessary to develop new strategies to guarantee the growth,health,and well-being of farmed animals.Debaryomyces hansenii is a ye... Background The development of a sustainable business model with social acceptance,makes necessary to develop new strategies to guarantee the growth,health,and well-being of farmed animals.Debaryomyces hansenii is a yeast species that can be used as a probiotic in aquaculture due to its capacity to i)promote cell proliferation and differen-tiation,ii)have immunostimulatory effects,iii)modulate gut microbiota,and/or iv)enhance the digestive function.To provide inside into the effects of D.hansenii on juveniles of gilthead seabream(Sparus aurata)condition,we inte-grated the evaluation of the main key performance indicators coupled with the integrative analysis of the intestine condition,through histological and microbiota state,and its transcriptomic profiling.Results After 70 days of a nutritional trial in which a diet with low levels of fishmeal(7%)was supplemented with 1.1%of D.hansenii(17.2×10^(5) CFU),an increase of ca.12%in somatic growth was observed together with an improve-ment in feed conversion in fish fed a yeast-supplemented diet.In terms of intestinal condition,this probiotic modu-lated gut microbiota without affecting the intestine cell organization,whereas an increase in the staining intensity of mucins rich in carboxylated and weakly sulphated glycoconjugates coupled with changes in the affinity for certain lectins were noted in goblet cells.Changes in microbiota were characterized by the reduction in abundance of several groups of Proteobacteria,especially those characterized as opportunistic groups.The microarrays-based transcrip-tomic analysis found 232 differential expressed genes in the anterior-mid intestine of S.aurata,that were mostly related to metabolic,antioxidant,immune,and symbiotic processes.Conclusions Dietary administration of D.hansenii enhanced somatic growth and improved feed efficiency param-eters,results that were coupled to an improvement of intestinal condition as histochemical and transcriptomic tools indicated.This probiotic yeast stimulated host-microbiota interactions without altering the intestinal cell organization nor generating dysbiosis,which demonstrated its safety as a feed additive.At the transcriptomic level,D.hansenii pro-moted metabolic pathways,mainly protein-related,sphingolipid,and thymidylate pathways,in addition to enhance antioxidant-related intestinal mechanisms,and to regulate sentinel immune processes,potentiating the defensive capacity meanwhile maintaining the homeostatic status of the intestine. 展开更多
关键词 Debaryomyces hansenii Intestine condition Low fish meal diet MICROBIOTA TRANSCRIPTOMICS Yeast probiotic
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Mandarin fish von Hippel-Lindau protein regulates the NF-κB signaling pathway via interaction with IκB to promote fish ranavirus replication
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作者 Zhi-Min Li Xiao-Wei Qin +8 位作者 Qi Zhang Jian He Min-Cong Liang Chuan-Rui Li Yang Yu Weng-Hui Liu Shao-Ping Weng Jian-Guo He Chang-Jun Guo 《Zoological Research》 SCIE CSCD 2024年第5期990-1000,共11页
The von Hippel-Lindau tumor suppressor protein(VHL),an E3 ubiquitin ligase,functions as a critical regulator of the oxygen-sensing pathway for targeting hypoxia-inducible factors.Recent evidence suggests that mammalia... The von Hippel-Lindau tumor suppressor protein(VHL),an E3 ubiquitin ligase,functions as a critical regulator of the oxygen-sensing pathway for targeting hypoxia-inducible factors.Recent evidence suggests that mammalian VHL may also be critical to the NF-κB signaling pathway,although the specific molecular mechanisms remain unclear.Herein,the roles of mandarin fish(Siniperca chuatsi)VHL(scVHL)in the NF-κB signaling pathway and mandarin fish ranavirus(MRV)replication were explored.The transcription of scVHL was induced by immune stimulation and MRV infection,indicating a potential role in innate immunity.Dual-luciferase reporter gene assays and reverse transcription quantitative PCR(RT-qPCR)results demonstrated that scVHL evoked and positively regulated the NF-κB signaling pathway.Treatment with NF-κB signaling pathway inhibitors indicated that the role of scVHL may be mediated through scIKKα,scIKKβ,scIκBα,or scp65.Co-immunoprecipitation(Co-IP)analysis identified scIκBαas a novel target protein of scVHL.Moreover,scVHL targeted scIκBαto catalyze the formation of K63-linked polyubiquitin chains to activate the NF-κB signaling pathway.Following MRV infection,NF-κB signaling remained activated,which,in turn,promoted MRV replication.These findings suggest that scVHL not only positively regulates NF-κB but also significantly enhances MRV replication.This study reveals a novel function of scVHL in NF-κB signaling and viral infection in fish. 展开更多
关键词 VHL NF-κB IΚBΑ RANAVIRUS Mandarin fish
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IHC、FISH、qRT-PCR检测NSCLC ALK融合基因的对比分析
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作者 朱宇凝 屈顺林 +5 位作者 曹晓卉 杨志慧 孙桂凤 殷正进 刘仕琦 张缨 《中南医学科学杂志》 CAS 2024年第1期64-67,共4页
目的对比分析免疫组化(IHC)、荧光原位杂交(FISH)、实时荧光定量PCR(qRT-PCR)检测非小细胞肺癌(NSCLC)ALK融合基因情况。方法收集453例NSCLC标本。随机选取IHC检测的ALK融合基因不同表达程度标本40例[ALK(-)、(+)、(2+)、(3+)标本各10... 目的对比分析免疫组化(IHC)、荧光原位杂交(FISH)、实时荧光定量PCR(qRT-PCR)检测非小细胞肺癌(NSCLC)ALK融合基因情况。方法收集453例NSCLC标本。随机选取IHC检测的ALK融合基因不同表达程度标本40例[ALK(-)、(+)、(2+)、(3+)标本各10例],采用FISH和qRT-PCR法分别检测各组ALK融合基因表达水平,并进行一致性分析。结果IHC与FISH、qRT-PCR的ALK融合基因检测结果比较,IHC ALK(-)/(3+)与FISH、qRT-PCR检测结果一致率均为100%,具有高度一致性(r=0.781、r=0.740,P<0.05)。FISH与qRT-PCR的检测结果一致率为97.5%,具有高度一致性(r=0.943,P<0.05)。结论FISH、qRT-PCR法与IHC法检测在不同表达程度ALK融合基因样本中检测结果存在差别,IHC敏感性更高。FISH、qRT-PCR法在ALK融合基因样本的检测结果具有高度一致性。 展开更多
关键词 NSCLC ALK融合 IHC fish QRT-PCR
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比较两种固定液过度固定乳腺癌组织对FISH法检测HER2基因的影响
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作者 缪琛 贺骁 +1 位作者 韩雪 宋国新 《临床与实验病理学杂志》 CAS 北大核心 2024年第3期323-325,共3页
FISH技术常用于检测和定位染色体上特定的DNA序列[1],有利于病理鉴别诊断[2]、指导临床靶向用药[3]和监测肿瘤的复发[4]。组织标本的前处理对确保临床检验结果的准确性尤为重要,固定是组织处理中最重要的环节,也是整个制片过程中最无法... FISH技术常用于检测和定位染色体上特定的DNA序列[1],有利于病理鉴别诊断[2]、指导临床靶向用药[3]和监测肿瘤的复发[4]。组织标本的前处理对确保临床检验结果的准确性尤为重要,固定是组织处理中最重要的环节,也是整个制片过程中最无法补救的一步[5],组织过度固定或固定不足均会对检测结果造成影响[6]。乳腺癌穿刺样本,在离体后即加入固定液中保存,由于周末节假日等原因,部分样本未能及时送至病理科,穿刺组织体积较小易出现固定过度,在制片中常存在消化难和杂交背景亮等问题。 展开更多
关键词 乳腺肿瘤 环保固定液 fish HER2
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A Novel YOLOv5s-Based Lightweight Model for Detecting Fish’s Unhealthy States in Aquaculture
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作者 Bing Shi Jianhua Zhao +2 位作者 Bin Ma Juan Huan Yueping Sun 《Computers, Materials & Continua》 SCIE EI 2024年第11期2437-2456,共20页
Real-time detection of unhealthy fish remains a significant challenge in intensive recirculating aquaculture.Early recognition of unhealthy fish and the implementation of appropriate treatment measures are crucial for... Real-time detection of unhealthy fish remains a significant challenge in intensive recirculating aquaculture.Early recognition of unhealthy fish and the implementation of appropriate treatment measures are crucial for preventing the spread of diseases and minimizing economic losses.To address this issue,an improved algorithm based on the You Only Look Once v5s(YOLOv5s)lightweight model has been proposed.This enhanced model incorporates a faster lightweight structure and a new Convolutional Block Attention Module(CBAM)to achieve high recognition accuracy.Furthermore,the model introduces theα-SIoU loss function,which combines theα-Intersection over Union(α-IoU)and Shape Intersection over Union(SIoU)loss functions,thereby improving the accuracy of bounding box regression and object recognition.The average precision of the improved model reaches 94.2%for detecting unhealthy fish,representing increases of 11.3%,9.9%,9.7%,2.5%,and 2.1%compared to YOLOv3-tiny,YOLOv4,YOLOv5s,GhostNet-YOLOv5,and YOLOv7,respectively.Additionally,the improved model positively impacts hardware efficiency,reducing requirements for memory size by 59.0%,67.0%,63.0%,44.7%,and 55.6%in comparison to the five models mentioned above.The experimental results underscore the effectiveness of these approaches in addressing the challenges associated with fish health detection,and highlighting their significant practical implications and broad application prospects. 展开更多
关键词 Intensive recirculating aquaculture unhealthy fish detection improved YOLOv5s lightweight structure
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