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A dynamic database of solid-state electrolyte(DDSE)picturing all-solid-state batteries 被引量:1
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作者 Fangling Yang Egon Campos dos Santos +5 位作者 Xue Jia Ryuhei Sato Kazuaki Kisu Yusuke Hashimoto Shin-ichi Orimo Hao Li 《Nano Materials Science》 EI CAS CSCD 2024年第2期256-262,共7页
All-solid-state batteries(ASSBs)are a class of safer and higher-energy-density materials compared to conventional devices,from which solid-state electrolytes(SSEs)are their essential components.To date,investigations ... All-solid-state batteries(ASSBs)are a class of safer and higher-energy-density materials compared to conventional devices,from which solid-state electrolytes(SSEs)are their essential components.To date,investigations to search for high ion-conducting solid-state electrolytes have attracted broad concern.However,obtaining SSEs with high ionic conductivity is challenging due to the complex structural information and the less-explored structure-performance relationship.To provide a solution to these challenges,developing a database containing typical SSEs from available experimental reports would be a new avenue to understand the structureperformance relationships and find out new design guidelines for reasonable SSEs.Herein,a dynamic experimental database containing>600 materials was developed in a wide range of temperatures(132.40–1261.60 K),including mono-and divalent cations(e.g.,Li^(+),Na^(+),K^(+),Ag^(+),Ca^(2+),Mg^(2+),and Zn^(2+))and various types of anions(e.g.,halide,hydride,sulfide,and oxide).Data-mining was conducted to explore the relationships among different variates(e.g.,transport ion,composition,activation energy,and conductivity).Overall,we expect that this database can provide essential guidelines for the design and development of high-performance SSEs in ASSB applications.This database is dynamically updated,which can be accessed via our open-source online system. 展开更多
关键词 Solid-state electrolyte(SSE) All-solid-state battery(ASSB) Ionic conductivity Dynamic database Machine learning
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Discrimination of polysorbate 20 by high-performance liquid chromatography-charged aerosol detection and characterization for components by expanding compound database and library
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作者 Shi-Qi Wang Xun Zhao +10 位作者 Li-Jun Zhang Yue-Mei Zhao Lei Chen Jin-Lin Zhang Bao-Cheng Wang Sheng Tang Tom Yuan Yaozuo Yuan Mei Zhang Hian Kee Lee Hai-Wei Shi 《Journal of Pharmaceutical Analysis》 SCIE CAS CSCD 2024年第5期722-732,共11页
Analyzing polysorbate 20(PS20)composition and the impact of each component on stability and safety is crucial due to formulation variations and individual tolerance.The similar structures and polarities of PS20 compon... Analyzing polysorbate 20(PS20)composition and the impact of each component on stability and safety is crucial due to formulation variations and individual tolerance.The similar structures and polarities of PS20 components make accurate separation,identification,and quantification challenging.In this work,a high-resolution quantitative method was developed using single-dimensional high-performance liquid chromatography(HPLC)with charged aerosol detection(CAD)to separate 18 key components with multiple esters.The separated components were characterized by ultra-high-performance liquid chromatography-quadrupole time-of-flight mass spectrometry(UHPLC-Q-TOF-MS)with an identical gradient as the HPLC-CAD analysis.The polysorbate compound database and library were expanded over 7-time compared to the commercial database.The method investigated differences in PS20 samples from various origins and grades for different dosage forms to evaluate the composition-process relationship.UHPLC-Q-TOF-MS identified 1329 to 1511 compounds in 4 batches of PS20 from different sources.The method observed the impact of 4 degradation conditions on peak components,identifying stable components and their tendencies to change.HPLC-CAD and UHPLC-Q-TOF-MS results provided insights into fingerprint differences,distinguishing quasi products. 展开更多
关键词 Polysorbate 20 Component database DISCRIMINATION Degradation
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Databases of 2D material-substrate interfaces and 2D charged building blocks
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作者 邓俊 潘金波 杜世萱 《Chinese Physics B》 SCIE EI CAS CSCD 2024年第2期34-38,共5页
Discovery of materials using“bottom-up”or“top-down”approach is of great interest in materials science.Layered materials consisting of two-dimensional(2D)building blocks provide a good platform to explore new mater... Discovery of materials using“bottom-up”or“top-down”approach is of great interest in materials science.Layered materials consisting of two-dimensional(2D)building blocks provide a good platform to explore new materials in this respect.In van der Waals(vdW)layered materials,these building blocks are charge neutral and can be isolated from their bulk phase(top-down),but usually grow on substrate.In ionic layered materials,they are charged and usually cannot exist independently but can serve as motifs to construct new materials(bottom-up).In this paper,we introduce our recently constructed databases for 2D material-substrate interface(2DMSI),and 2D charged building blocks.For 2DMSI database,we systematically build a workflow to predict appropriate substrates and their geometries at substrates,and construct the 2DMSI database.For the 2D charged building block database,1208 entries from bulk material database are identified.Information of crystal structure,valence state,source,dimension and so on is provided for each entry with a json format.We also show its application in designing and searching for new functional layered materials.The 2DMSI database,building block database,and designed layered materials are available in Science Data Bank at https://doi.org/10.57760/sciencedb.j00113.00188. 展开更多
关键词 2D material-substrate interfaces charged building block database functional-oriented materials design layered materials density functional theory
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Comprehensive analysis of advanced glycation end-products in commonly consumed foods:presenting a database for dietary AGEs and associated exposure assessment
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作者 Qiaozhi Zhang Huatao Li +7 位作者 Ruixing Zheng Lili Cao Shufen Zhang Shuifeng Zhang Huadong Sheng Yuhao Jiang Yanbo Wang Linglin Fu 《Food Science and Human Wellness》 SCIE CAS CSCD 2024年第4期1917-1928,共12页
Advanced glycation end-products(AGEs)are a group of heterogeneous compounds formed in heatprocessed foods and are proven to be detrimental to human health.Currently,there is no comprehensive database for AGEs in foods... Advanced glycation end-products(AGEs)are a group of heterogeneous compounds formed in heatprocessed foods and are proven to be detrimental to human health.Currently,there is no comprehensive database for AGEs in foods that covers the entire range of food categories,which limits the accurate risk assessment of dietary AGEs in human diseases.In this study,we first established an isotope dilution UHPLCQq Q-MS/MS-based method for simultaneous quantification of 10 major AGEs in foods.The contents of these AGEs were detected in 334 foods covering all main groups consumed in Western and Chinese populations.Nε-Carboxymethyllysine,methylglyoxal-derived hydroimidazolone isomers,and glyoxal-derived hydroimidazolone-1 are predominant AGEs found in most foodstuffs.Total amounts of AGEs were high in processed nuts,bakery products,and certain types of cereals and meats(>150 mg/kg),while low in dairy products,vegetables,fruits,and beverages(<40 mg/kg).Assessment of estimated daily intake implied that the contribution of food groups to daily AGE intake varied a lot under different eating patterns,and selection of high-AGE foods leads to up to a 2.7-fold higher intake of AGEs through daily meals.The presented AGE database allows accurate assessment of dietary exposure to these glycotoxins to explore their physiological impacts on human health. 展开更多
关键词 Advanced glycation end-products Maillard reaction Processed foods Dietary database Exposure assessment
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Enhancing AI System Privacy:An Automatic Tool for Achieving GDPR Compliance in NoSQL Databases
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作者 Yifei Zhao Zhaohui Li Siyi Lv 《Computers, Materials & Continua》 SCIE EI 2024年第7期217-234,共18页
The EU’s Artificial Intelligence Act(AI Act)imposes requirements for the privacy compliance of AI systems.AI systems must comply with privacy laws such as the GDPR when providing services.These laws provide users wit... The EU’s Artificial Intelligence Act(AI Act)imposes requirements for the privacy compliance of AI systems.AI systems must comply with privacy laws such as the GDPR when providing services.These laws provide users with the right to issue a Data Subject Access Request(DSAR).Responding to such requests requires database administrators to identify information related to an individual accurately.However,manual compliance poses significant challenges and is error-prone.Database administrators need to write queries through time-consuming labor.The demand for large amounts of data by AI systems has driven the development of NoSQL databases.Due to the flexible schema of NoSQL databases,identifying personal information becomes even more challenging.This paper develops an automated tool to identify personal information that can help organizations respond to DSAR.Our tool employs a combination of various technologies,including schema extraction of NoSQL databases and relationship identification from query logs.We describe the algorithm used by our tool,detailing how it discovers and extracts implicit relationships from NoSQL databases and generates relationship graphs to help developers accurately identify personal data.We evaluate our tool on three datasets,covering different database designs,achieving an F1 score of 0.77 to 1.Experimental results demonstrate that our tool successfully identifies information relevant to the data subject.Our tool reduces manual effort and simplifies GDPR compliance,showing practical application value in enhancing the privacy performance of NOSQL databases and AI systems. 展开更多
关键词 GDPR compliance NoSQL databases AI system PRIVACY
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Impact of index admission cholecystectomy vs interval cholecystectomy on readmission rate in acute cholangitis: National Readmission Database survey
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作者 Abdullah Sohail Ahmed Shehadah +4 位作者 Ammad Chaudhary Khadija Naseem Amna Iqbal Ahmad Khan Shailendra Singh 《World Journal of Gastrointestinal Endoscopy》 2024年第6期350-360,共11页
BACKGROUND Elective cholecystectomy(CCY)is recommended for patients with gallstone-related acute cholangitis(AC)following endoscopic decompression to prevent recurrent biliary events.However,the optimal timing and imp... BACKGROUND Elective cholecystectomy(CCY)is recommended for patients with gallstone-related acute cholangitis(AC)following endoscopic decompression to prevent recurrent biliary events.However,the optimal timing and implications of CCY remain unclear.AIM To examine the impact of same-admission CCY compared to interval CCY on patients with gallstone-related AC using the National Readmission Database(NRD).METHODS We queried the NRD to identify all gallstone-related AC hospitalizations in adult patients with and without the same admission CCY between 2016 and 2020.Our primary outcome was all-cause 30-d readmission rates,and secondary outcomes included in-hospital mortality,length of stay(LOS),and hospitalization cost.RESULTS Among the 124964 gallstone-related AC hospitalizations,only 14.67%underwent the same admission CCY.The all-cause 30-d readmissions in the same admission CCY group were almost half that of the non-CCY group(5.56%vs 11.50%).Patients in the same admission CCY group had a longer mean LOS and higher hospitalization costs attrib-utable to surgery.Although the most common reason for readmission was sepsis in both groups,the second most common reason was AC in the interval CCY group.CONCLUSION Our study suggests that patients with gallstone-related AC who do not undergo the same admission CCY have twice the risk of readmission compared to those who undergo CCY during the same admission.These readmis-sions can potentially be prevented by performing same-admission CCY in appropriate patients,which may reduce subsequent hospitalization costs secondary to readmissions. 展开更多
关键词 Acute cholangitis Gallstone-related complications National Readmission database 30-d readmission rates Resource utilization In-hospital mortality
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Application of Thermodynamic Database to Corrosion of ZrO_(2) Containing Submerged Entry Nozzle in Steel Continuous Casting Process
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作者 In-Ho JUNG 《China's Refractories》 CAS 2024年第2期10-15,共6页
The CALPHAD thermodynamic databases are very useful to analyze the complex chemical reactions happening in high temperature material process.The FactSage thermodynamic database can be used to calculate complex phase d... The CALPHAD thermodynamic databases are very useful to analyze the complex chemical reactions happening in high temperature material process.The FactSage thermodynamic database can be used to calculate complex phase diagrams and equilibrium phases involving refractories in industrial process.In this study,the FactSage thermodynamic database relevant to ZrO_(2)-based refractories was reviewed and the application of the database to understanding the corrosion of continuous casting nozzle refractories in steelmaking was presented. 展开更多
关键词 thermodynamic database ZrO_(2)containing submerged entry nozzle continous casting
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Database Search Behaviors: Insight from a Survey of Information Retrieval Practices
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作者 Babita Trivedi Brijender Dahiya +2 位作者 Anjali Maan Rajesh Giri Vinod Prasad 《Intelligent Information Management》 2024年第5期195-218,共24页
This study examines the database search behaviors of individuals, focusing on gender differences and the impact of planning habits on information retrieval. Data were collected from a survey of 198 respondents, catego... This study examines the database search behaviors of individuals, focusing on gender differences and the impact of planning habits on information retrieval. Data were collected from a survey of 198 respondents, categorized by their discipline, schooling background, internet usage, and information retrieval preferences. Key findings indicate that females are more likely to plan their searches in advance and prefer structured methods of information retrieval, such as using library portals and leading university websites. Males, however, tend to use web search engines and self-archiving methods more frequently. This analysis provides valuable insights for educational institutions and libraries to optimize their resources and services based on user behavior patterns. 展开更多
关键词 Information Retrieval database Search User Behavior Patterns
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Large Language Model Based Semantic Parsing for Intelligent Database Query Engine
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作者 Zhizhong Wu 《Journal of Computer and Communications》 2024年第10期1-13,共13页
With the rapid development of artificial intelligence, large language models (LLMs) have demonstrated remarkable capabilities in natural language understanding and generation. These models have great potential to enha... With the rapid development of artificial intelligence, large language models (LLMs) have demonstrated remarkable capabilities in natural language understanding and generation. These models have great potential to enhance database query systems, enabling more intuitive and semantic query mechanisms. Our model leverages LLM’s deep learning architecture to interpret and process natural language queries and translate them into accurate database queries. The system integrates an LLM-powered semantic parser that translates user input into structured queries that can be understood by the database management system. First, the user query is pre-processed, the text is normalized, and the ambiguity is removed. This is followed by semantic parsing, where the LLM interprets the pre-processed text and identifies key entities and relationships. This is followed by query generation, which converts the parsed information into a structured query format and tailors it to the target database schema. Finally, there is query execution and feedback, where the resulting query is executed on the database and the results are returned to the user. The system also provides feedback mechanisms to improve and optimize future query interpretations. By using advanced LLMs for model implementation and fine-tuning on diverse datasets, the experimental results show that the proposed method significantly improves the accuracy and usability of database queries, making data retrieval easy for users without specialized knowledge. 展开更多
关键词 Semantic Query Large Language Models Intelligent database Natural Language Processing
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Use of Component Integration Services in Multidatabase Systems: A Feasible Solution for Integrating Academic Institutions or Commercial Industries
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作者 Mohammad Ghulam Ali Mohammad Ghulam Murtuza 《Journal of Software Engineering and Applications》 2023年第11期561-585,共25页
The book chapter is an extended version of the research paper entitled “Use of Component Integration Services in Multidatabase Systems”, which is presented and published by the 13<sup>th</sup> ISITA, the... The book chapter is an extended version of the research paper entitled “Use of Component Integration Services in Multidatabase Systems”, which is presented and published by the 13<sup>th</sup> ISITA, the National Conference of Recent Trends in Mathematical and Computer Sciences, T.M.B. University, Bhagalpur, India, January 3-4, 2015. Information is widely distributed across many remote, distributed, and autonomous databases (local component databases) in heterogeneous formats. The integration of heterogeneous remote databases is a difficult task, and it has already been addressed by several projects to certain extents. In this chapter, we have discussed how to integrate heterogeneous distributed local relational databases because of their simplicity, excellent security, performance, power, flexibility, data independence, support for new hardware technologies, and spread across the globe. We have also discussed how to constitute a global conceptual schema in the multidatabase system using Sybase Adaptive Server Enterprise’s Component Integration Services (CIS) and OmniConnect. This is feasible for higher education institutions and commercial industries as well. Considering the higher educational institutions, the CIS will improve IT integration for educational institutions with their subsidiaries or with other institutions within the country and abroad in terms of educational management, teaching, learning, and research, including promoting international students’ academic integration, collaboration, and governance. This will prove an innovative strategy to support the modernization and large expansion of academic institutions. This will be considered IT-institutional alignment within a higher education context. This will also support achieving one of the sustainable development goals set by the United Nations: “Goal 4: ensure inclusive and quality education for all and promote lifelong learning”. However, the process of IT integration into higher educational institutions must be thoroughly evaluated, identifying the vital data access points. In this chapter, Section 1 provides an introduction, including the evolution of various database systems, data models, and the emergence of multidatabase systems and their importance. Section 2 discusses component integration services (CIS), OmniConnect and considering heterogeneous relational distributed local databases from the perspective of academics, Section 3 discusses the Sybase Adaptive Server Enterprise (ASE), Section 4 discusses the role of component integration services and OmniConnect of Sybase ASE under the Multidatabase System, Section 5 shows the database architectural framework, Section 6 provides an implementation overview of the global conceptual schema in the multidatabase system, Section 7 discusses query processing in the CIS, and finally, Section 8 concludes the chapter. The chapter will help our students a lot, as we have discussed well the evolution of databases and data models and the emergence of multidatabases. Since some additional useful information is cited, the source of information for each citation is properly mentioned in the references column. 展开更多
关键词 Relational database Component Integration Services OmniConnect MULTIdatabase Global Conceptual Schema Distributed database Local Conceptual Schema database Integration IT Integration Higher Education Commercial Industries HEIs
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Prognostic Factors of Liver Transplantation for Hepatocellular Carcinoma: A Surveillance, Epidemiology, and End Results (SEER) Database Analysis
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作者 Jun-bo LI Yuan-yuan ZHAO +4 位作者 Chen DAI Dong CHEN Lai WEI Bo YANG Zhi-shui CHEN 《Current Medical Science》 SCIE CAS 2023年第2期329-335,共7页
Objective We aimed to identify new,more accurate risk factors of liver transplantation for liver cancer through using the Surveillance,Epidemiology,and End Results(SEER)database.Methods Using the SEER database,we iden... Objective We aimed to identify new,more accurate risk factors of liver transplantation for liver cancer through using the Surveillance,Epidemiology,and End Results(SEER)database.Methods Using the SEER database,we identified patients that had undergone surgical resection for non-metastatic hepatocellular carcinoma(HCC)and subsequent liver transplantation between 2010 and 2017.Overall survival(OS)was estimated using Kaplan-Meier plotter.Cox proportional hazards regression modelling was used to identify factors independently associated with recurrent disease[presented as adjusted hazard ratios(HR)with 95%CIs].Results Totally,1530 eligible patients were included in the analysis.There were significant differences in ethnicity(P=0.04),cancer stage(P<0.001),vascular invasion(P<0.001)and gall bladder involvement(P<0.001)between the groups that survived,died due to cancer,or died due to other causes.In the Cox regression model,there were no significant differences in OS at 5 years with different operative strategies(autotransplantation versus allotransplantation),nor at survival at 1 year with neoadjuvant radiotherapy.However,neoadjuvant radiotherapy did appear to improve survival at both 3 years(HR:0.540,95%CI:0.326–0.896,P=0.017)and 5 years(HR:0.338,95%CI:0.153–0.747,P=0.007)from diagnosis.Conclusion This study demonstrated differences in patient characteristics between prognostic groups after liver resection and transplantation for HCC.These criteria can be used to inform patient selection and consent in this setting.Preoperative radiotherapy may improve long-term survival post-transplantation. 展开更多
关键词 database analysis cohort study liver transplantation organ transplantation hepatocellular carcinoma SEER database
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A MySQL-Based Software System of Urban Land Planning Database of Shanghai in China
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作者 Pei Yin Jing Cheng 《Computer Modeling in Engineering & Sciences》 SCIE EI 2023年第6期2387-2405,共19页
With the development of the digital city,data and data analysis have become more and more important.The database is the foundation of data analysis.In this paper,the software system of the urban land planning database... With the development of the digital city,data and data analysis have become more and more important.The database is the foundation of data analysis.In this paper,the software system of the urban land planning database of Shanghai in China is developed based on MySQL.The conceptual model of the urban land planning database is proposed,and the entities,attributes and connections of this model are discussed.Then the E-R conceptual model is transformed into a logical structure,which is supported by the relational databasemanagement system(DBMS).Based on the conceptual and logical structures,by using Spring Boot as the back-end framework and using MySQL and Java API as the development tools,a platformwith datamanagement,information sharing,map assistance and other functions is established.The functionalmodules in this platformare designed.The results of J Meter test show that the DBMS can add,store and retrieve information data stably,and it has the advantages of fast response and low error rate.The software system of the urban land planning database developed in this paper can improve the efficiency of storing and managing land data,eliminating redundant data and sharing data. 展开更多
关键词 SOFTWARE database database management system urban land planning MYSQL
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Fusion of Hash-Based Hard and Soft Biometrics for Enhancing Face Image Database Search and Retrieval
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作者 Ameerah Abdullah Alshahrani Emad Sami Jaha Nahed Alowidi 《Computers, Materials & Continua》 SCIE EI 2023年第12期3489-3509,共21页
The utilization of digital picture search and retrieval has grown substantially in numerous fields for different purposes during the last decade,owing to the continuing advances in image processing and computer vision... The utilization of digital picture search and retrieval has grown substantially in numerous fields for different purposes during the last decade,owing to the continuing advances in image processing and computer vision approaches.In multiple real-life applications,for example,social media,content-based face picture retrieval is a well-invested technique for large-scale databases,where there is a significant necessity for reliable retrieval capabilities enabling quick search in a vast number of pictures.Humans widely employ faces for recognizing and identifying people.Thus,face recognition through formal or personal pictures is increasingly used in various real-life applications,such as helping crime investigators retrieve matching images from face image databases to identify victims and criminals.However,such face image retrieval becomes more challenging in large-scale databases,where traditional vision-based face analysis requires ample additional storage space than the raw face images already occupied to store extracted lengthy feature vectors and takes much longer to process and match thousands of face images.This work mainly contributes to enhancing face image retrieval performance in large-scale databases using hash codes inferred by locality-sensitive hashing(LSH)for facial hard and soft biometrics as(Hard BioHash)and(Soft BioHash),respectively,to be used as a search input for retrieving the top-k matching faces.Moreover,we propose the multi-biometric score-level fusion of both face hard and soft BioHashes(Hard-Soft BioHash Fusion)for further augmented face image retrieval.The experimental outcomes applied on the Labeled Faces in the Wild(LFW)dataset and the related attributes dataset(LFW-attributes),demonstrate that the retrieval performance of the suggested fusion approach(Hard-Soft BioHash Fusion)significantly improved the retrieval performance compared to solely using Hard BioHash or Soft BioHash in isolation,where the suggested method provides an augmented accuracy of 87%when executed on 1000 specimens and 77%on 5743 samples.These results remarkably outperform the results of the Hard BioHash method by(50%on the 1000 samples and 30%on the 5743 samples),and the Soft BioHash method by(78%on the 1000 samples and 63%on the 5743 samples). 展开更多
关键词 Face image retrieval soft biometrics similar pictures HASHING database search large databases score-level fusion multimodal fusion
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On Software Application Database Constraint-driven Design and Development
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作者 Christian Mancas Cristina Serban Diana Christina Mancas 《Journal of Computer Science Research》 2023年第1期31-45,共15页
This paper presents a methodology driven by database constraints for designing and developing(database)software applications.Much needed and with excellent results,this paradigm guarantees the highest possible quality... This paper presents a methodology driven by database constraints for designing and developing(database)software applications.Much needed and with excellent results,this paradigm guarantees the highest possible quality of the managed data.The proposed methodology is illustrated with an easy to understand,yet complex medium-sized genealogy software application driven by more than 200 database constraints,which fully meets such expectations. 展开更多
关键词 database constraint-driven design and development database constraint Data plausibility Software architecture Design and development The(elementary)mathematical data model MatBase
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ARGs-OAP v3.0:Antibiotic-Resistance Gene Database Curation and Analysis Pipeline Optimization 被引量:1
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作者 Xiaole Yin Xiawan Zheng +3 位作者 Liguan Li An-Ni Zhang Xiao-Tao Jiang Tong Zhang 《Engineering》 SCIE EI CAS CSCD 2023年第8期234-241,共8页
Antibiotic resistance,which is encoded by antibiotic-resistance genes(ARGs),has proliferated to become a growing threat to public health around the world.With technical advances,especially in the popularization of met... Antibiotic resistance,which is encoded by antibiotic-resistance genes(ARGs),has proliferated to become a growing threat to public health around the world.With technical advances,especially in the popularization of metagenomic sequencing,scientists have gained the ability to decipher the profiles of ARGs in diverse samples with high accuracy at an accelerated speed.To analyze thousands of ARGs in a highthroughput way,standardized and integrated pipelines are needed.The new version(v3.0)of the widely used ARGs online analysis pipeline(ARGs-OAP)has made significant improvements to both the reference database-the structured ARG(SARG)database-and the integrated analysis pipeline.SARG has been enhanced with sequence curation to improve annotation reliability,incorporate emerging resistance genotypes,and determine rigorous mechanism classification.The database has been further organized and visualized online in the format of a tree-like structure with a dictionary.It has also been divided into sub-databases for different application scenarios.In addition,the ARGs-OAP has been improved with adjusted quantification methods,simplified tool implementation,and multiple functions with userdefined reference databases.Moreover,the online platform now provides a diverse biostatistical analysis workflow with visualization packages for the efficient interpretation of ARG profiles.The ARGs-OAP v3.0 with an improved database and analysis pipeline will benefit academia,governmental management,and consultation regarding risk assessment of the environmental prevalence of ARGs. 展开更多
关键词 SARG database ARGs-OAP Antibiotic-resistance genes Environmental metagenome Quantification
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Phylobone: a comprehensive database of bone extracellular matrix proteins in human and model organisms 被引量:1
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作者 Margalida Fontcuberta-Rigo Miho Nakamura Pere Puigbò 《Bone Research》 SCIE CAS CSCD 2023年第3期617-624,共8页
The bone extracellular matrix(ECM) contains minerals deposited on highly crosslinked collagen fibrils and hundreds of noncollagenous proteins. Some of these proteins are key to the regulation of bone formation and reg... The bone extracellular matrix(ECM) contains minerals deposited on highly crosslinked collagen fibrils and hundreds of noncollagenous proteins. Some of these proteins are key to the regulation of bone formation and regeneration via signaling pathways,and play important regulatory and structural roles. However, the complete list of bone extracellular matrix proteins, their roles, and the extent of individual and cross-species variations have not been fully captured in both humans and model organisms. Here, we introduce the most comprehensive resource of bone extracellular matrix(ECM) proteins that can be used in research fields such as bone regeneration, osteoporosis, and mechanobiology. The Phylobone database(available at https://phylobone.com) includes 255proteins potentially expressed in the bone extracellular matrix(ECM) of humans and 30 species of vertebrates. A bioinformatics pipeline was used to identify the evolutionary relationships of bone ECM proteins. The analysis facilitated the identification of potential model organisms to study the molecular mechanisms of bone regeneration. A network analysis showed high connectivity of bone ECM proteins. A total of 214 functional protein domains were identified, including collagen and the domains involved in bone formation and resorption. Information from public drug repositories was used to identify potential repurposing of existing drugs. The Phylobone database provides a platform to study bone regeneration and osteoporosis in light of(biological) evolution,and will substantially contribute to the identification of molecular mechanisms and drug targets. 展开更多
关键词 DRUGS MATRIX database
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Meta-analysis of CO_(2) conversion,energy efficiency,and other performance data of plasma-catalysis reactors with the open access PIONEER database 被引量:1
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作者 Antoine Salden Maik Budde +28 位作者 Carolina A.Garcia-Soto Omar Biondo Jairo Barauna Marzia Faedda Beatrice Musig ChloéFromentin Minh Nguyen-Quang Harry Philpott Golshid Hasrack Domenico Aceto Yuxiang Cai Federico Azzolina Jury Annemie Bogaerts Patrick Da Costa Richard Engeln María Elena Gálvez Timo Gans Tomas Garcia Vasco Guerra Carlos Henriques Monika Motak Maria Victoria Navarro Vasile I.Parvulescu Gerard Van Rooij Bogdan Samojeden Ana Sobota Paolo Tosi Xin Tu Olivier Guaitella 《Journal of Energy Chemistry》 SCIE EI CAS CSCD 2023年第11期318-342,I0007,共26页
This paper brings the comparison of performances of CO_(2)conversion by plasma and plasma-assisted catalysis based on the data collected from literature in this field,organised in an open access online database.This t... This paper brings the comparison of performances of CO_(2)conversion by plasma and plasma-assisted catalysis based on the data collected from literature in this field,organised in an open access online database.This tool is open to all users to carry out their own analyses,but also to contributors who wish to add their data to the database in order to improve the relevance of the comparisons made,and ultimately to improve the efficiency of CO_(2)conversion by plasma-catalysis.The creation of this database and database user interface is motivated by the fact that plasma-catalysis is a fast-growing field for all CO_(2)conversion processes,be it methanation,dry reforming of methane,methanolisation,or others.As a result of this rapid increase,there is a need for a set of standard procedures to rigorously compare performances of different systems.However,this is currently not possible because the fundamental mechanisms of plasma-catalysis are still too poorly understood to define these standard procedures.Fortunately however,the accumulated data within the CO_(2)plasma-catalysis community has become large enough to warrant so-called“big data”studies more familiar in the fields of medicine and the social sciences.To enable comparisons between multiple data sets and make future research more effective,this work proposes the first database on CO_(2)conversion performances by plasma-catalysis open to the whole community.This database has been initiated in the framework of a H_(2)0_(2)0 European project and is called the“PIONEER Data Base”.The database gathers a large amount of CO_(2)conversion performance data such as conversion rate,energy efficiency,and selectivity for numerous plasma sources coupled with or without a catalyst.Each data set is associated with metadata describing the gas mixture,the plasma source,the nature of the catalyst,and the form of coupling with the plasma.Beyond the database itself,a data extraction tool with direct visualisation features or advanced filtering functionalities has been developed and is available online to the public.The simple and fast visualisation of the state of the art puts new results into context,identifies literal gaps in data,and consequently points towards promising research routes.More advanced data extraction illustrates the impact that the database can have in the understanding of plasma-catalyst coupling.Lessons learned from the review of a large amount of literature during the setup of the database lead to best practice advice to increase comparability between future CO_(2)plasma-catalytic studies.Finally,the community is strongly encouraged to contribute to the database not only to increase the visibility of their data but also the relevance of the comparisons allowed by this tool. 展开更多
关键词 Open-access database on plasma-catalysis experiment CO_(2) conversion PLASMA-CATALYSIS Carbon capture and utilisation(CCU) Energy efficiency Specific energy input Dielectric barrier discharge Packed bed reactor METHANATION Dry reforming of methane
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CHDTEPDB:Transcriptome Expression Profile Database and Interactive Analysis Platform for Congenital Heart Disease 被引量:1
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作者 Ziguang Song Jiangbo Yu +7 位作者 Mengmeng Wang Weitao Shen Chengcheng Wang Tianyi Lu Gaojun Shan Guo Dong Yiru Wang Jiyi Zhao 《Congenital Heart Disease》 SCIE 2023年第6期693-701,共9页
CHDTEPDB(URL:http://chdtepdb.com/)is a manually integrated database for congenital heart disease(CHD)that stores the expression profiling data of CHD derived from published papers,aiming to provide rich resources for i... CHDTEPDB(URL:http://chdtepdb.com/)is a manually integrated database for congenital heart disease(CHD)that stores the expression profiling data of CHD derived from published papers,aiming to provide rich resources for investigating a deeper correlation between human CHD and aberrant transcriptome expression.The develop-ment of human diseases involves important regulatory roles of RNAs,and expression profiling data can reflect the underlying etiology of inherited diseases.Hence,collecting and compiling expression profiling data is of critical significance for a comprehensive understanding of the mechanisms and functions that underpin genetic diseases.CHDTEPDB stores the expression profiles of over 200 sets of 7 types of CHD and provides users with more convenient basic analytical functions.Due to the differences in clinical indicators such as disease type and unavoidable detection errors among various datasets,users are able to customize their selection of corresponding data for personalized analysis.Moreover,we provide a submission page for researchers to submit their own data so that increasing expression profiles as well as some other histological data could be supplemented to the database.CHDTEPDB is a user-friendly interface that allows users to quickly browse,retrieve,download,and analyze their target samples.CHDTEPDB will significantly improve the current knowledge of expression profiling data in CHD and has the potential to be exploited as an important tool for future research on the disease. 展开更多
关键词 Congenital heart disease(CHD) RNA expression data database VISUALIZATION
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FAST Pulsar Database.I.Polarization Profiles of 682 Pulsars 被引量:1
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作者 P.F.Wang J.L.Han +6 位作者 J.Xu C.Wang Y.Yan W.C.Jing W.Q.Su D.J.Zhou T.Wang 《Research in Astronomy and Astrophysics》 SCIE CAS CSCD 2023年第10期71-175,共105页
Pulsar polarization profiles form a very basic database for understanding the emission processes in a pulsar magnetosphere.After careful polarization calibration of the 19-beam L-band receiver and verification of beam... Pulsar polarization profiles form a very basic database for understanding the emission processes in a pulsar magnetosphere.After careful polarization calibration of the 19-beam L-band receiver and verification of beamoffset observation results,we obtain polarization profiles of 682 pulsars from observations by the Five-hundredmeter Aperture Spherical radio Telescope(FAST)duringthe Galactic Plane Pulsar Snapshot survey and other normal FAST projects.Among them,polarization profiles of about 460 pulsars are observed for the first time.The profiles exhibit diverse features.Some pulsars have a polarization position angle curve with a good S-shaped swing,some with orthogonal modes;some have components with highly linearly polarized components or strong circularly polarized components;some have a very wide profile,coming from an aligned rotator,and some have an interpulse from a perpendicular rotator;some wide profiles are caused by interstellar scattering.We derive geometric parameters for 190 pulsars from the S-shaped position angle curves or with orthogonal modes.We find that the linear and circular polarization or the widths of pulse profiles have various frequency dependencies.Pulsars with a large fraction of linear polarization are more likely to have a large Edot. 展开更多
关键词 POLARIZATION (stars:)pulsars:general astronomical databases:miscellaneous
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Analysis of the expression profile of miRNAs related to skin photoaging in the GEO database 被引量:1
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作者 KaHo LUI Haibo Zhao +2 位作者 Jiaqi Sun Zeren Shen Jinghong Xu 《Chinese Journal of Plastic and Reconstructive Surgery》 2023年第2期53-59,共7页
Background:Skin aging has recently gained significant attention in both society and skin care research.Understanding the biological processes of photoaging caused by long-term skin exposure to ultraviolet radiation is... Background:Skin aging has recently gained significant attention in both society and skin care research.Understanding the biological processes of photoaging caused by long-term skin exposure to ultraviolet radiation is critical for preventing and treating skin aging.Therefore,it is important to identify genes related to skin photoaging and shed light on their functions.Methods:We used data from the Gene Expression Omnibus(GEO)database and conducted bioinformatics analyses to screen and extract microRNAs(miRNAs)and their downstream target genes related to skin photoaging,and to determine possible biological mechanisms of skin photoaging.Results:A total of 34 differentially expressed miRNAs and their downstream target genes potentially related to the biological process of skin photoaging were identified.Gene Ontology enrichment analysis and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis showed that these target genes were enriched in pathways related to human papillomavirus infection,extracellular matrix(ECM)-receptor signaling,estrogen receptor,skin development,epidermal development,epidermal cell differentiation,keratinocyte differentiation,structural components of the ECM,structural components of the skin epidermis,and others.Conclusion:Based on the GEO database-derived findings,we determined that target genes of two miRNAs,namely miR-4667-5P-KRT79 and miR-139-5P-FOS,play an important role in skin photoaging.These observations could provide theoretical support and guidance for further research on skin aging-related biological processes. 展开更多
关键词 Skin photoaging MIRNAS GEO database
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