Western Subarctic Gyre(WSG),which possesses distinctive differences in oceanographic and biogeochemical processes,is situated in the northwest subarctic Pacific.The WSG is characterized by high nutrient and low chloro...Western Subarctic Gyre(WSG),which possesses distinctive differences in oceanographic and biogeochemical processes,is situated in the northwest subarctic Pacific.The WSG is characterized by high nutrient and low chlorophyll.We carried out a field investigation in this area in summer 2020 and performed microscopic observation,cytometric counting,and RuBisCO large subunit(rbc L)gene analysis to understand the community structure and spatial distribution of chromophytic phytoplankton better.Microscopic method revealed that total phytoplankton(>10μm,including Bacillariophyta,Dinoflagellata,Ochrophyta,and Chlorophyta)abundances ranged(0.6×10^(3))-(167.4×10^(3))cells/L with an increasing trend from south to north.Dinoflagellates and Pennatae diatoms dominated the phytoplankton assemblages in the southern and northern stations,respectively.Major chromophytic phytoplankton groups derived from rbc L genes included Haptophyta,Ochrophyta,Bacillariophyta,as well as rarely occurring groups,such as Xanthophyta,Cyanobacteria,Dinoflagellata,Rhodophyta,and Cryptophyta.At the phylum level,Haptophyta was the most abundant phylum,accounting for approximately 30.80%of the total obtained operational taxonomic units in all samples.Ochrophyta and Bacillariophyta were the second and third most abundant phylum,and their relative abundance was 20.26% and 19.60%,respectively.Further,redundancy analysis showed that high proportion of diatoms(e.g.,microscopic and rbc L methods)was positively correlated with nutrients(e.g.,dissolved inorganic nitrogen(DIN),dissolved inorganic phosphorous,and dissolved silicate(DSi))and negatively correlated with temperature and salinity.The proportion of Ochrophyta,Rhodophyta,and Cyanobateria identified by rbc L genes was positively correlated with salinity and temperature and showed negative correlation to nutrients.This work is the first molecular study of phytoplankton accomplished in the WSG,and our results show some discrepancies between morphological observation and rbc L gene sequences,which highlight the necessity of combining the microscopic and molecular methods to reveal the diversity of phytoplankton in marine environment.展开更多
The molecular phylogeny of the Lardizabalaceae is reconstructed based on chloroplast trn L_F sequences alone and combined trn L_F and rbc L sequences. The phylogenetic topologies agree well with Qin's and...The molecular phylogeny of the Lardizabalaceae is reconstructed based on chloroplast trn L_F sequences alone and combined trn L_F and rbc L sequences. The phylogenetic topologies agree well with Qin's and Takhtajan's tribal classification in both analyses. Decaisneae and Sinofranchetieae are basal clades in the phylogenetic trees and external to all other taxa in the family. Lardizabaleae consisting of Boquila and Lardizabala are well supported in both trn L_F (100%) analysis and trn L_F and rbc L combined analysis (99%). Tribe Akebieae are strongly supported by a bootstrap value of 100% in both trn L_F analysis and trn L_F and rbc L combined analysis. However, the new genus Archakebia is nested within the genus Akebia in the trn L_F trees. In the combined trees, Archakebia is sister to Akebia with high bootstrap support. The inter_relationships among three closely related genera Parvatia , Holboellia and Stauntonia are still problematic. P. brunoniana ssp. elliptica is sister to H. latifolia in both analyses with low bootstrap support. H. parviflora is nested within the Stauntonia and sister to S. cavalerieana . Therefore, these three genera of tribe Akebieae may not be monophylytic and their generic boundary and delimitation need to be further studied, by exploring more molecular data, together with more morphological characters.展开更多
Pinus squamata X. W. Li, a recently-described species of the Pinaceae, is an extremely endangered pine with only 32 individuals in the wild. This species was thought to be intermediate between P. bungeana Zuec. ex End...Pinus squamata X. W. Li, a recently-described species of the Pinaceae, is an extremely endangered pine with only 32 individuals in the wild. This species was thought to be intermediate between P. bungeana Zuec. ex Endl. of subgen. Strobus and P. yunnanensis Franch. of subgen. Pinus by the original author. We made an effort to address the question of the phylogenetic relationship of this peculiar and important species in the context of the major groups of the genus Pinus by using sequences of the rbcL, matK,genes, rpl20-rps18 spacer, trnV intron of the chloroplast genome and the nuclear ribosomal ITS region. The results of the separated analysis and the combined analysis of the four cpDNA sequences and ITS sequence indicated that P. squamata was a stable member of subsect. Gerardianae and P. gerardiana Wall. was the closest species of P. squamata phylogenetically. As a result, the causes of the distribution pattern of subsect. Gerardianae were also discussed.展开更多
2021年7月末至10月初,位于黄海沿岸的青岛市西海岸新区琅琊台湾贡口拦海坝处出现大量悬浮生长的大型红藻。为明确该类群的分类地位,探究其生物学特征,对该处红藻群体展开了实地调研,并采集相关样本开展了形态鉴定和分子系统发育分析。...2021年7月末至10月初,位于黄海沿岸的青岛市西海岸新区琅琊台湾贡口拦海坝处出现大量悬浮生长的大型红藻。为明确该类群的分类地位,探究其生物学特征,对该处红藻群体展开了实地调研,并采集相关样本开展了形态鉴定和分子系统发育分析。该群体主要由一种红藻组成,藻体紫红色、圆柱形,质软多肉,高度可达20cm,不规则互生分枝,分枝基部强烈缢缩、顶端尖细;藻体主轴横截面观可见较小的含色素外皮层细胞以及较大的近圆形假薄壁细胞和分布在髓层中央的散乱、疏松的丝状细胞。结合分子标记rbc L和cox I基因的系统发育分析结果,该物种被鉴定为细弱红翎菜(Solieria tenuis Zhang et Xia)。与历史研究记录不同,贡口拦海坝处的细弱红翎菜群体缺乏固着器和繁殖结构,悬浮性营养生长,所在海域丰富的氮磷营养可能为其快速生长提供了物质基础,在生长高峰期该群体总生物量约6 t (干重),是一次局部区域性小规模“藻华”。细弱红翎菜的悬浮生态型和暴发性增殖现象表明该物种可能具有较强的环境适应性,其生理特征和潜在的生态风险需进一步关注。展开更多
Plastid atp B/ rbc L intergenic spacer sequences were obtained from 21 selected taxa and one hybrid of Anemoninae ( Anemone, Pulsatilla, Hepatica ) and compared with Ficaria (Ranunculinae) as an outgroup. From the res...Plastid atp B/ rbc L intergenic spacer sequences were obtained from 21 selected taxa and one hybrid of Anemoninae ( Anemone, Pulsatilla, Hepatica ) and compared with Ficaria (Ranunculinae) as an outgroup. From the resulting matrix (1226 bp) a single most parsimonious tree was obtained (Fig. 1). The branching of this tree is confirmed by many informative indels and appears largely congruent with past plastid restriction analyses. Several new taxa are added. The monophyly of the Anemoninae and their early split into two major clades is supported: clade I with the chromosome base number x=8, clade II with the reduced x=7. Clade I is made up of the basal Pulsatilla and the Rivularis + Vitifolia groups. The Multifida group links to the crown groups Coronaria, Blanda and Nemorosa. Clade II consists of the basal Dichotoma group, followed by Hepatica, and finally by the N. Hemisphere Narcissiflora and the S. Hemisphere Antucensis groups as sisters. The problems of the Anemoninae ancestry, phylogenetic differentiation, and recent attempts for systematic classification are critically discussed. In view of the still incomplete sampling of DNA data, a conservative and informal approach to classification problems is recommended.展开更多
Genus Grateloupia is one of the most speciose genera in family Halymeniales. It is also one of the sources for natural materials, food and medicine. With different environments, Grateloupia change their morphological ...Genus Grateloupia is one of the most speciose genera in family Halymeniales. It is also one of the sources for natural materials, food and medicine. With different environments, Grateloupia change their morphological characteristics, making their morphological identification very difficult. In addition, few of the species diversity in this genus has been described before. In this study, phylogenetic analysis based on rbc L gene sequence was employed to group Grateloupia collected from three locations along Chinese coast. The microsatellites were also used to evaluate their genetic diversity. In total, the tissue parts of 6 putative species were collected from G. asiatica, G. livida, G. lanceolate, G. catenata, G. turuturu and G. filicina. In order to evaluate their genetic diversity and then conserve them better, 40 microsatellites available for Grateloupia were used to evaluate their genetic diversity, and 11 microsatellites were found to be applicable to determine the genetic diversity of G. asiatica. It was found that the genetic diversity of G. asiatica around Qingdao was very rich. We suggested that the species of genus Grateloupia should be identified based on rbc L phylogenetic analysis before the diversity evaluation with microsatellites. The microsatellites should be developed for each species of Grateloupia so that their genetic diversity can be evaluated appropriately.展开更多
Virescentia guangxiensis,a new species of Virescentia from Guangxi,South China,is described and illustrated based on morphological observations and phylogenetic analysis.This species was distinguished morphologically ...Virescentia guangxiensis,a new species of Virescentia from Guangxi,South China,is described and illustrated based on morphological observations and phylogenetic analysis.This species was distinguished morphologically from other species by the presence of special expansion cells with a variable shape,obovoid,spherical,pear-shaped,located in the penultimate cells of primary or secondary fascicles,rarely terminal on primary fascicles,as well as by small whorls(250-350-μm wide)and short primary fascicles(5-7 cell stories).Phylogenetic analysis of molecular data from the rbc L and COI-5P loci supported the separation of the proposed new species from other species in the genus Virescentia.This is the first species of the order Batrachospermales reported in Guangxi and the second species of the genus Virescentia reported in China.This study expands the known species diversity and geographical distribution of freshwater Rhodophyta in China.展开更多
Species of the red algal order Acrochaetiales mostly inhabit marine environments,with only two freshwater taxa Audouinella and Ottia.A new genus and species are described for freshwater red alga Pauciramus yunnanensis...Species of the red algal order Acrochaetiales mostly inhabit marine environments,with only two freshwater taxa Audouinella and Ottia.A new genus and species are described for freshwater red alga Pauciramus yunnanensis from Ailao Mountain,Yunnan,China.It is closely related to Ottia and a new order Ottiales was proposed for these genera.Pauciramus has unique combination of morphological characteristics including the following:plants caespitose and densely pulvinate,slender uniseriate filaments with well-developed rhizoids,rarely branched,cylindrical vegetative cell with a single,ribbon-shaped and parietal chloroplast,reproduction by tetrasporangia,and dense sporangial branchlet only at the upper portion of filaments.Phylogenetic analysis of sequence data from the plastid ribulose-1,5-bisphosphate carboxylase-oxygenase large-subunit(rbc L),small subunit gene of the ribosomal cistron(SSU)and barcode region near the 5′end of the mitochondrial cytochrome oxidase subunit I(COI-5P)indicated that:the new taxon,P.yunnanensis,was in a well-supported clade with Ottia meiospora,and this clade was sister to order Palmariales and Acrochaetiales.To adhere to the principle of monophyly,a new freshwater order Ottiales including Ottia and Pauciramus is proposed.Despite the high sequence interspecific divergences and obvious morphological differences between genera Ottia and Pauciramus,seems impractical to establish a new family for a monospecific genus.Therefore,we temporarily classified Pauciramus into the family Ottiaceae,and made necessary revisions to the description to accommodate this genus.展开更多
基金Supported by the National Key Research and Development Program of China(No.2019YFD0901401)the National Natural Science Foundation of China(Nos.42176206,81900630)+2 种基金the Natural Science Foundation of Shandong Province(No.ZR2021MD071)the“One Hundred Talents”Project of Guangxi(No.6020303891251)the Outstanding Youth Project of Yunnan Provincial Department of Science and Technology(No.2019F1019)。
文摘Western Subarctic Gyre(WSG),which possesses distinctive differences in oceanographic and biogeochemical processes,is situated in the northwest subarctic Pacific.The WSG is characterized by high nutrient and low chlorophyll.We carried out a field investigation in this area in summer 2020 and performed microscopic observation,cytometric counting,and RuBisCO large subunit(rbc L)gene analysis to understand the community structure and spatial distribution of chromophytic phytoplankton better.Microscopic method revealed that total phytoplankton(>10μm,including Bacillariophyta,Dinoflagellata,Ochrophyta,and Chlorophyta)abundances ranged(0.6×10^(3))-(167.4×10^(3))cells/L with an increasing trend from south to north.Dinoflagellates and Pennatae diatoms dominated the phytoplankton assemblages in the southern and northern stations,respectively.Major chromophytic phytoplankton groups derived from rbc L genes included Haptophyta,Ochrophyta,Bacillariophyta,as well as rarely occurring groups,such as Xanthophyta,Cyanobacteria,Dinoflagellata,Rhodophyta,and Cryptophyta.At the phylum level,Haptophyta was the most abundant phylum,accounting for approximately 30.80%of the total obtained operational taxonomic units in all samples.Ochrophyta and Bacillariophyta were the second and third most abundant phylum,and their relative abundance was 20.26% and 19.60%,respectively.Further,redundancy analysis showed that high proportion of diatoms(e.g.,microscopic and rbc L methods)was positively correlated with nutrients(e.g.,dissolved inorganic nitrogen(DIN),dissolved inorganic phosphorous,and dissolved silicate(DSi))and negatively correlated with temperature and salinity.The proportion of Ochrophyta,Rhodophyta,and Cyanobateria identified by rbc L genes was positively correlated with salinity and temperature and showed negative correlation to nutrients.This work is the first molecular study of phytoplankton accomplished in the WSG,and our results show some discrepancies between morphological observation and rbc L gene sequences,which highlight the necessity of combining the microscopic and molecular methods to reveal the diversity of phytoplankton in marine environment.
文摘The molecular phylogeny of the Lardizabalaceae is reconstructed based on chloroplast trn L_F sequences alone and combined trn L_F and rbc L sequences. The phylogenetic topologies agree well with Qin's and Takhtajan's tribal classification in both analyses. Decaisneae and Sinofranchetieae are basal clades in the phylogenetic trees and external to all other taxa in the family. Lardizabaleae consisting of Boquila and Lardizabala are well supported in both trn L_F (100%) analysis and trn L_F and rbc L combined analysis (99%). Tribe Akebieae are strongly supported by a bootstrap value of 100% in both trn L_F analysis and trn L_F and rbc L combined analysis. However, the new genus Archakebia is nested within the genus Akebia in the trn L_F trees. In the combined trees, Archakebia is sister to Akebia with high bootstrap support. The inter_relationships among three closely related genera Parvatia , Holboellia and Stauntonia are still problematic. P. brunoniana ssp. elliptica is sister to H. latifolia in both analyses with low bootstrap support. H. parviflora is nested within the Stauntonia and sister to S. cavalerieana . Therefore, these three genera of tribe Akebieae may not be monophylytic and their generic boundary and delimitation need to be further studied, by exploring more molecular data, together with more morphological characters.
文摘Pinus squamata X. W. Li, a recently-described species of the Pinaceae, is an extremely endangered pine with only 32 individuals in the wild. This species was thought to be intermediate between P. bungeana Zuec. ex Endl. of subgen. Strobus and P. yunnanensis Franch. of subgen. Pinus by the original author. We made an effort to address the question of the phylogenetic relationship of this peculiar and important species in the context of the major groups of the genus Pinus by using sequences of the rbcL, matK,genes, rpl20-rps18 spacer, trnV intron of the chloroplast genome and the nuclear ribosomal ITS region. The results of the separated analysis and the combined analysis of the four cpDNA sequences and ITS sequence indicated that P. squamata was a stable member of subsect. Gerardianae and P. gerardiana Wall. was the closest species of P. squamata phylogenetically. As a result, the causes of the distribution pattern of subsect. Gerardianae were also discussed.
文摘2021年7月末至10月初,位于黄海沿岸的青岛市西海岸新区琅琊台湾贡口拦海坝处出现大量悬浮生长的大型红藻。为明确该类群的分类地位,探究其生物学特征,对该处红藻群体展开了实地调研,并采集相关样本开展了形态鉴定和分子系统发育分析。该群体主要由一种红藻组成,藻体紫红色、圆柱形,质软多肉,高度可达20cm,不规则互生分枝,分枝基部强烈缢缩、顶端尖细;藻体主轴横截面观可见较小的含色素外皮层细胞以及较大的近圆形假薄壁细胞和分布在髓层中央的散乱、疏松的丝状细胞。结合分子标记rbc L和cox I基因的系统发育分析结果,该物种被鉴定为细弱红翎菜(Solieria tenuis Zhang et Xia)。与历史研究记录不同,贡口拦海坝处的细弱红翎菜群体缺乏固着器和繁殖结构,悬浮性营养生长,所在海域丰富的氮磷营养可能为其快速生长提供了物质基础,在生长高峰期该群体总生物量约6 t (干重),是一次局部区域性小规模“藻华”。细弱红翎菜的悬浮生态型和暴发性增殖现象表明该物种可能具有较强的环境适应性,其生理特征和潜在的生态风险需进一步关注。
文摘Plastid atp B/ rbc L intergenic spacer sequences were obtained from 21 selected taxa and one hybrid of Anemoninae ( Anemone, Pulsatilla, Hepatica ) and compared with Ficaria (Ranunculinae) as an outgroup. From the resulting matrix (1226 bp) a single most parsimonious tree was obtained (Fig. 1). The branching of this tree is confirmed by many informative indels and appears largely congruent with past plastid restriction analyses. Several new taxa are added. The monophyly of the Anemoninae and their early split into two major clades is supported: clade I with the chromosome base number x=8, clade II with the reduced x=7. Clade I is made up of the basal Pulsatilla and the Rivularis + Vitifolia groups. The Multifida group links to the crown groups Coronaria, Blanda and Nemorosa. Clade II consists of the basal Dichotoma group, followed by Hepatica, and finally by the N. Hemisphere Narcissiflora and the S. Hemisphere Antucensis groups as sisters. The problems of the Anemoninae ancestry, phylogenetic differentiation, and recent attempts for systematic classification are critically discussed. In view of the still incomplete sampling of DNA data, a conservative and informal approach to classification problems is recommended.
基金supported by the Marine Industry Research Special Funds for Public Welfare Projects(No.201205024)
文摘Genus Grateloupia is one of the most speciose genera in family Halymeniales. It is also one of the sources for natural materials, food and medicine. With different environments, Grateloupia change their morphological characteristics, making their morphological identification very difficult. In addition, few of the species diversity in this genus has been described before. In this study, phylogenetic analysis based on rbc L gene sequence was employed to group Grateloupia collected from three locations along Chinese coast. The microsatellites were also used to evaluate their genetic diversity. In total, the tissue parts of 6 putative species were collected from G. asiatica, G. livida, G. lanceolate, G. catenata, G. turuturu and G. filicina. In order to evaluate their genetic diversity and then conserve them better, 40 microsatellites available for Grateloupia were used to evaluate their genetic diversity, and 11 microsatellites were found to be applicable to determine the genetic diversity of G. asiatica. It was found that the genetic diversity of G. asiatica around Qingdao was very rich. We suggested that the species of genus Grateloupia should be identified based on rbc L phylogenetic analysis before the diversity evaluation with microsatellites. The microsatellites should be developed for each species of Grateloupia so that their genetic diversity can be evaluated appropriately.
基金Supported by the National Natural Science Foundation of China(Nos.31670208,41871037,31800172)the Fund for Shanxi“1331 Project”。
文摘Virescentia guangxiensis,a new species of Virescentia from Guangxi,South China,is described and illustrated based on morphological observations and phylogenetic analysis.This species was distinguished morphologically from other species by the presence of special expansion cells with a variable shape,obovoid,spherical,pear-shaped,located in the penultimate cells of primary or secondary fascicles,rarely terminal on primary fascicles,as well as by small whorls(250-350-μm wide)and short primary fascicles(5-7 cell stories).Phylogenetic analysis of molecular data from the rbc L and COI-5P loci supported the separation of the proposed new species from other species in the genus Virescentia.This is the first species of the order Batrachospermales reported in Guangxi and the second species of the genus Virescentia reported in China.This study expands the known species diversity and geographical distribution of freshwater Rhodophyta in China.
基金Supported by the National Natural Science Foundation of China (No.41871037 to Shulian XIE and No.31800172 to Fangru NAN)the Fund for Shanxi"1331 Project"
文摘Species of the red algal order Acrochaetiales mostly inhabit marine environments,with only two freshwater taxa Audouinella and Ottia.A new genus and species are described for freshwater red alga Pauciramus yunnanensis from Ailao Mountain,Yunnan,China.It is closely related to Ottia and a new order Ottiales was proposed for these genera.Pauciramus has unique combination of morphological characteristics including the following:plants caespitose and densely pulvinate,slender uniseriate filaments with well-developed rhizoids,rarely branched,cylindrical vegetative cell with a single,ribbon-shaped and parietal chloroplast,reproduction by tetrasporangia,and dense sporangial branchlet only at the upper portion of filaments.Phylogenetic analysis of sequence data from the plastid ribulose-1,5-bisphosphate carboxylase-oxygenase large-subunit(rbc L),small subunit gene of the ribosomal cistron(SSU)and barcode region near the 5′end of the mitochondrial cytochrome oxidase subunit I(COI-5P)indicated that:the new taxon,P.yunnanensis,was in a well-supported clade with Ottia meiospora,and this clade was sister to order Palmariales and Acrochaetiales.To adhere to the principle of monophyly,a new freshwater order Ottiales including Ottia and Pauciramus is proposed.Despite the high sequence interspecific divergences and obvious morphological differences between genera Ottia and Pauciramus,seems impractical to establish a new family for a monospecific genus.Therefore,we temporarily classified Pauciramus into the family Ottiaceae,and made necessary revisions to the description to accommodate this genus.
