Performing cluster analysis on molecular conformation is an important way to find the representative conformation in the molecular dynamics trajectories.Usually,it is a critical step for interpreting complex conformat...Performing cluster analysis on molecular conformation is an important way to find the representative conformation in the molecular dynamics trajectories.Usually,it is a critical step for interpreting complex conformational changes or interaction mechanisms.As one of the density-based clustering algorithms,find density peaks(FDP)is an accurate and reasonable candidate for the molecular conformation clustering.However,facing the rapidly increasing simulation length due to the increase in computing power,the low computing efficiency of FDP limits its application potential.Here we propose a marginal extension to FDP named K-means find density peaks(KFDP)to solve the mass source consuming problem.In KFDP,the points are initially clustered by a high efficiency clustering algorithm,such as K-means.Cluster centers are defined as typical points with a weight which represents the cluster size.Then,the weighted typical points are clustered again by FDP,and then are refined as core,boundary,and redefined halo points.In this way,KFDP has comparable accuracy as FDP but its computational complexity is reduced from O(n^(2))to O(n).We apply and test our KFDP method to the trajectory data of multiple small proteins in terms of torsion angle,secondary structure or contact map.The comparing results with K-means and density-based spatial clustering of applications with noise show the validation of the proposed KFDP.展开更多
The loss factors and their effects on the magnitude and frequency of resonance peaks in various mechanical sys-tems are reviewed for acoustic,vibration,and vibration fatigue applications.The main trends and relationsh...The loss factors and their effects on the magnitude and frequency of resonance peaks in various mechanical sys-tems are reviewed for acoustic,vibration,and vibration fatigue applications.The main trends and relationships were obtained for linear mechanical models with hysteresis damping.The well-known features(complex module of elasticity,total loss factor,etc.)are clarified for practical engineers and students,and new results are presented(in particular,for 2-DOF in-series models with hysteresis friction).The results are of both educational and prac-tical interest and may be applied for NVH analysis and testing,mechanical and aeromechanical design,and noise and vibration control in buildings.展开更多
[Objective] The aim was to present a proposal about a new image compression technology, in order to make the image be able to be stored in a smaller space and be transmitted with smaller bit rate on the premise of gua...[Objective] The aim was to present a proposal about a new image compression technology, in order to make the image be able to be stored in a smaller space and be transmitted with smaller bit rate on the premise of guaranteeing image quality in the rape crop monitoring system in Qinling Mountains. [Method] In the proposal, the color image was divided into brightness images with three fundamental colors, followed by sub-image division and DCT treatment. Then, coefficients of transform domain were quantized, and encoded and compressed as per Huffman coding. Finally, decompression was conducted through inverse process and decompressed images were matched. [Result] The simulation results show that when compression ratio of the color image of rape crops was 11.972 3∶1, human can not distinguish the differences between the decompressed images and the source images with naked eyes; when ratio was as high as 53.565 6∶1, PSNR was still above 30 dD,encoding efficiency achieved over 0.78 and redundancy was less than 0.22. [Conclusion] The results indicate that the proposed color image compression technology can achieve higher compression ratio on the premise of good image quality. In addition, image encoding quality and decompressed images achieved better results, which fully met requirement of image storage and transmission in monitoring system of rape crop in the Qinling Mountains.展开更多
基金Professor Hong Yu at Intelligent Fishery Innovative Team(No.C202109)in School of Information Engineering of Dalian Ocean University for her support of this workfunded by the National Natural Science Foundation of China(No.31800615 and No.21933010)。
文摘Performing cluster analysis on molecular conformation is an important way to find the representative conformation in the molecular dynamics trajectories.Usually,it is a critical step for interpreting complex conformational changes or interaction mechanisms.As one of the density-based clustering algorithms,find density peaks(FDP)is an accurate and reasonable candidate for the molecular conformation clustering.However,facing the rapidly increasing simulation length due to the increase in computing power,the low computing efficiency of FDP limits its application potential.Here we propose a marginal extension to FDP named K-means find density peaks(KFDP)to solve the mass source consuming problem.In KFDP,the points are initially clustered by a high efficiency clustering algorithm,such as K-means.Cluster centers are defined as typical points with a weight which represents the cluster size.Then,the weighted typical points are clustered again by FDP,and then are refined as core,boundary,and redefined halo points.In this way,KFDP has comparable accuracy as FDP but its computational complexity is reduced from O(n^(2))to O(n).We apply and test our KFDP method to the trajectory data of multiple small proteins in terms of torsion angle,secondary structure or contact map.The comparing results with K-means and density-based spatial clustering of applications with noise show the validation of the proposed KFDP.
文摘The loss factors and their effects on the magnitude and frequency of resonance peaks in various mechanical sys-tems are reviewed for acoustic,vibration,and vibration fatigue applications.The main trends and relationships were obtained for linear mechanical models with hysteresis damping.The well-known features(complex module of elasticity,total loss factor,etc.)are clarified for practical engineers and students,and new results are presented(in particular,for 2-DOF in-series models with hysteresis friction).The results are of both educational and prac-tical interest and may be applied for NVH analysis and testing,mechanical and aeromechanical design,and noise and vibration control in buildings.
基金Project supported by the National Science Foundation of China(No.61103076)the Shanghai Municipal Natural Science Foundation(No.12ZR1410800)+1 种基金the Innovation Program of Shanghai Municipal Education Commission(No.13YZ016)the "863" National High Technology Research and Development Program of China(No.2013AA01A603)
基金Supported by Special Fund for Scientific Research of Shannxi Education Department(No:2010JK463)Shaanxi Natural Science Foundation(2011JE012)~~
文摘[Objective] The aim was to present a proposal about a new image compression technology, in order to make the image be able to be stored in a smaller space and be transmitted with smaller bit rate on the premise of guaranteeing image quality in the rape crop monitoring system in Qinling Mountains. [Method] In the proposal, the color image was divided into brightness images with three fundamental colors, followed by sub-image division and DCT treatment. Then, coefficients of transform domain were quantized, and encoded and compressed as per Huffman coding. Finally, decompression was conducted through inverse process and decompressed images were matched. [Result] The simulation results show that when compression ratio of the color image of rape crops was 11.972 3∶1, human can not distinguish the differences between the decompressed images and the source images with naked eyes; when ratio was as high as 53.565 6∶1, PSNR was still above 30 dD,encoding efficiency achieved over 0.78 and redundancy was less than 0.22. [Conclusion] The results indicate that the proposed color image compression technology can achieve higher compression ratio on the premise of good image quality. In addition, image encoding quality and decompressed images achieved better results, which fully met requirement of image storage and transmission in monitoring system of rape crop in the Qinling Mountains.
