Ear-related traits are often selection targets for maize improvement. This study used an immortalized F(IF) population to elucidate the genetic basis of ear-related traits. Twelve ear-related traits(namely, row number...Ear-related traits are often selection targets for maize improvement. This study used an immortalized F(IF) population to elucidate the genetic basis of ear-related traits. Twelve ear-related traits(namely, row number(RN), kernel number per row(KNPR), ear length(EL), ear diameter(ED), ten-kernel thickness(TKT), ear weight(EW), cob diameter(CD),kernel length(KL), kernel width(KW), grain weight per ear(GW), 100-kernel weight(HKW), and grain yield per plot(GY)),were collected from the IFpopulation. The ear-related traits were comprised of 265 crosses derived from 516 individuals of the recombinant inbred lines(RILs) under two separated environments in 2017 and 2018, respectively. Quantitative trait loci(QTLs) analyses identified 165 ear traits related QTLs, which explained phenotypic variation ranging from 0.1 to 12.66%. Among the 165 QTLs, 19 underlying nine ear-related traits(CD, ED, GY, RN, TKT, HKW, KL, GW, and KNPR)were identified across multiple environments and recognized as reliable QTLs. Furthermore, 44.85% of the total QTLs showed an overdominance effect, and 12.72% showed a dominance effect. Additionally, we found 35 genomic regions exhibiting pleiotropic effects across the whole maize genome, and 17 heterotic loci(HLs) for RN, EL, ED and EW were identified. The results provide insights into genetic components of ear-related traits and enhance the understanding of the genetic basis of heterosis in maize.展开更多
Normal corn germplasm can be used to improve popcorn （Zea mays L.） through 1-2 backcrosses with popcorn as recurrent parents. Popping characteristics of derived lines from popcorn × dent or flint corn crosses p...Normal corn germplasm can be used to improve popcorn （Zea mays L.） through 1-2 backcrosses with popcorn as recurrent parents. Popping characteristics of derived lines from popcorn × dent or flint corn crosses play a determinant role in popcorn breeding. Advanced backcross QTL methods can effectively combine QTL identification and plant breeding. 220 selected BC2F2 families developed from a cross between Dan 232, a dent corn inbred line, and N04, an elite popcorn inbred line, were evaluated for three popping characteristics, popping volume, flake size, and popping rate, under two environmental conditions. Using composite interval mapping, a total of 10 significant QTLs were detected, and of these, 2 to 4 QTLs were identified for each trait. Six QTLs had favorable alleles contributed by Dan 232. Comparison with the 15 QTLs detected in the F2：3 families showed that 3 QTLs were the same in both populations. The QTLs should be redetected in generations developed through severe selection. Improved N04 and near isogenic lines could be developed from this BC2F2 population through selfing or another 1 to 2 backcrosses with N04.展开更多
Cotton occupies a pre-eminent place among cash crops as it guides the destiny of a large section of the farming community as well as that of a flourishing textile industry.As the yarn manufacturing industry has underg...Cotton occupies a pre-eminent place among cash crops as it guides the destiny of a large section of the farming community as well as that of a flourishing textile industry.As the yarn manufacturing industry has undergone a technological revolution,more emphasis is given to quality of the raw展开更多
Utilization of heterosis has greatly contributed to rice productivity in China and many Asian countries. Superior hybrids usually show heterosis at two stages： canopy development at vegetative stage and panicle devel...Utilization of heterosis has greatly contributed to rice productivity in China and many Asian countries. Superior hybrids usually show heterosis at two stages： canopy development at vegetative stage and panicle development at reproductive stage resulting in heterosis in yield. Although the genetic basis of heterosis in rice has been extensively investigated, all the previous studies focused on yield traits at maturity stage. In this study, we analyzed the genetic basis of heterosis at seedling stage making use of an ＂immortalized F2＂ population composed of 105 hybrids produced by intercrossing recombinant inbred lines （RILs） from a cross between Zhenshan 97 and Minghui 63, the parents of Shanyou 63, which is an elite hybrid widely grown in China. Eight seedling traits, seedling height, tiller number, leaf number, root number, maximum root length, root dry weight, shoot dry weight and total dry weight, were investigated using hydroponic culture. We analyzed single-locus and digenic genetic effects at the whole genome level using an ultrahigh-density SNP bin map obtained by population re-sequencing. The analysis revealed large numbers of heterotic effects for seedling traits including dominance, over- dominance and digenic dominance （epistasis） in both positive and negative directions. Overdominance effects were prevalent for all the traits, and digenic dominance effects also accounted for a large portion of the genetic effects. The results suggested that cumulative small advantages of the single-locus effects and two-locus interactions, most of which could not be detected statistically, could explain the genetic basis of seedling heterosis of the F1 hybrid.展开更多
Immortalized F2 population of rice (Oryza sativa L.) was developed by randomly mating F1 among recombinant inbred (RI) lines derived from (Zhenshan 97B×Minghui 63),which allowed replications within and across env...Immortalized F2 population of rice (Oryza sativa L.) was developed by randomly mating F1 among recombinant inbred (RI) lines derived from (Zhenshan 97B×Minghui 63),which allowed replications within and across environments.QTL (quantitative trait loci) mapping analysis on kilo-grain weight of immortalized F2 population was performed by using newly developed software for QTL mapping,QTL Mapper 2.0. Eleven distinctly digenic epistatic loci included a total of 15 QTL were located on eight chromosomes.QTL main effects of additive,dominance,and additive×additive,additive×dominance,and dominance×dominance interactions were estimated.Interaction effects between QTL main effects and environments (QE) were predicted.Less than 40% of single effects,most of which were additive effects,for identified QTL were significant at 5% level.The directional difference for QTL main effects suggested that these QTL were distributed in parents in the repulsion phase.This should make it feasible to improve kilo-grain weight of both parents by selecting appropriate new recombinants. Only few of the QE interaction effects were significant.Application prospect for QTL mapping achievements in genetic breeding was discussed.展开更多
The classification and inheritance of rice starch RVA profiles were studied by testing RVA profiles of F2 clonally propagated population and some varieties, including japonica, indica, and glutinous types. All the RVA...The classification and inheritance of rice starch RVA profiles were studied by testing RVA profiles of F2 clonally propagated population and some varieties, including japonica, indica, and glutinous types. All the RVA profiles of accessions could be divided into six kinds based on the cluster analysis, that is A, B, C, D, E and F. Feature profile of sticky variety was type A. The profiles of indica varieties could be presented as B, C, D, E and F types and that of japonica varieties fell into D, E and F types.RVA profiles of the rice were mainly affected by apparent amylose content (AAC), but the difference of RVA profiles could also be detected in the varieties with similar AAC. The close relationship between RVA profile indices and sensory of low or middle AAC varieties suggested that the RVA profiles can be used as indirect index to evaluate eating and cooking quality. In four hybrid combinations, the component indices of RVA profiles of F1 were between those of its parents except peak viscosity and pasting temperature. Also, in F2 clonally propagated population, all the components of the RVA profiles showed continuous segregation,suggesting that all of them were controlled by a series of minor genes, although Wx gene may play an important role in determining the RVA profiles. These results may provide some new information useful for rice quality breeding program.展开更多
ALTHOUGH soybean is one of world’s leading sources of seed oil and seed protein, the develop-ment of its genetic map has lagged behind that of other crops such as rice and maize. The maincauses for this can be attrib...ALTHOUGH soybean is one of world’s leading sources of seed oil and seed protein, the develop-ment of its genetic map has lagged behind that of other crops such as rice and maize. The maincauses for this can be attributed to the lack of genetic diversity among soybean accessions, thepaucity of classical markers, the big size and complexity of the genome, and the small size anddifficulty in distinguishing of the chromosomes. The classical genetic map of展开更多
Soybean mosaic virus （SMV） is one of the most serious diseases affecting soy-bean yield. Recombination inbred lines （RILs） are common materials for resistance genetic research. However, the population constructi...Soybean mosaic virus （SMV） is one of the most serious diseases affecting soy-bean yield. Recombination inbred lines （RILs） are common materials for resistance genetic research. However, the population construction always takes quite a long time which pro-long the breading process. Shoot-cutting is a well-established technique for plant multipli-cation. It has high successful ratio in soybean. In this study, we use shoot-cutting to multiply two F2 populations from the crosses of susceptible and resistant varieties. Soybean plants can be multiplied from 1 into 3 homogenous ones within 30 days, bringing on well-grown plants with normal seeds. The SMV resistance from cutting-shoot plants was consistent with that from original plants. When shoot-cutting is applied in a F2 population, the pheno-typic and genotypic data can be simultaneously collected and corresponding saved during population development. The genetic research and resistant breeding can be effectively promoted by this technology.展开更多
Myostatin, a new member of the TGF-p superfamily, is predominantly expressed in skeletal muscle cells and functions as a negative regulator of skeletal muscle growth in animals. Recently, we have reported three single...Myostatin, a new member of the TGF-p superfamily, is predominantly expressed in skeletal muscle cells and functions as a negative regulator of skeletal muscle growth in animals. Recently, we have reported three single nucleotide polymorphisms (SNPs) in the chicken my-ostatin gene. Herein, we investigate the association of those SNPs with the production traits in a F2 chicken line derived from Broilers crossing to Silky with the least square analysis. The results show that the BB and AA genotypes are strongly associated with abdominal fat weight (AFW), abdominal fat percentage (AFP), and birth weight (BW) (P < 0.05). Breast muscle percentage (BMP) of the AA type is higher than that of the AB type. The breast muscle weight and breast muscle percentages of F2 individuals have significant difference between CC and DD genotypes (P< 0.05). Breast muscle weight (BMW) of EF birds is higher than that of EE birds (P< 0.05). In this report, we present the first genetic evidence to show that chicken myostatin not only plays an important role in controlling skeletal muscle growth and differentiation, but also may be involved in regulation of adipose growth in chicken.展开更多
Fattiness is an important parameter to estimate meat quality, which has high heritability. In this experiment, F2 chickens derived from Broilers crossing to Silky were used to study the effect of extracellular fatty a...Fattiness is an important parameter to estimate meat quality, which has high heritability. In this experiment, F2 chickens derived from Broilers crossing to Silky were used to study the effect of extracellular fatty acid binding protein (EX-FABP) gene on abdominal fat accumulation. 1.6 kb of the 5′ region of the gene was amplified by six pairs of primers, and then single nucleotide poly-morphisms (SNPs) were detected by the technique of single strand conformation polymorphism (SSCP) and then confirmed by sequencing. There were four nucleotides variations found, A-G at -1807, C-A at -1805, T-C at -1011 and a C insertion at -1000 respectively. The result of least square analysis suggests that the birds with BB genotype defined by the second pair of primer have a higher abdominal fat weight and abdominal fat percentage than the birds with the other genotypes (AA and AB). It implied that EX-FABP gene could be a candidate locus or linked to a major gene to significantly affect abdominal fat traits in chicken.展开更多
基金supported by the National Key R&D Program of China(2016YFD0100802 and 2016YFD0101803)the National Natural Science Foundation of China(31421005 and 91935303)。
文摘Ear-related traits are often selection targets for maize improvement. This study used an immortalized F(IF) population to elucidate the genetic basis of ear-related traits. Twelve ear-related traits(namely, row number(RN), kernel number per row(KNPR), ear length(EL), ear diameter(ED), ten-kernel thickness(TKT), ear weight(EW), cob diameter(CD),kernel length(KL), kernel width(KW), grain weight per ear(GW), 100-kernel weight(HKW), and grain yield per plot(GY)),were collected from the IFpopulation. The ear-related traits were comprised of 265 crosses derived from 516 individuals of the recombinant inbred lines(RILs) under two separated environments in 2017 and 2018, respectively. Quantitative trait loci(QTLs) analyses identified 165 ear traits related QTLs, which explained phenotypic variation ranging from 0.1 to 12.66%. Among the 165 QTLs, 19 underlying nine ear-related traits(CD, ED, GY, RN, TKT, HKW, KL, GW, and KNPR)were identified across multiple environments and recognized as reliable QTLs. Furthermore, 44.85% of the total QTLs showed an overdominance effect, and 12.72% showed a dominance effect. Additionally, we found 35 genomic regions exhibiting pleiotropic effects across the whole maize genome, and 17 heterotic loci(HLs) for RN, EL, ED and EW were identified. The results provide insights into genetic components of ear-related traits and enhance the understanding of the genetic basis of heterosis in maize.
基金funded by the Natural Science Founda-tion of Henan Province of China (0511032900).
文摘Normal corn germplasm can be used to improve popcorn （Zea mays L.） through 1-2 backcrosses with popcorn as recurrent parents. Popping characteristics of derived lines from popcorn × dent or flint corn crosses play a determinant role in popcorn breeding. Advanced backcross QTL methods can effectively combine QTL identification and plant breeding. 220 selected BC2F2 families developed from a cross between Dan 232, a dent corn inbred line, and N04, an elite popcorn inbred line, were evaluated for three popping characteristics, popping volume, flake size, and popping rate, under two environmental conditions. Using composite interval mapping, a total of 10 significant QTLs were detected, and of these, 2 to 4 QTLs were identified for each trait. Six QTLs had favorable alleles contributed by Dan 232. Comparison with the 15 QTLs detected in the F2：3 families showed that 3 QTLs were the same in both populations. The QTLs should be redetected in generations developed through severe selection. Improved N04 and near isogenic lines could be developed from this BC2F2 population through selfing or another 1 to 2 backcrosses with N04.
文摘Cotton occupies a pre-eminent place among cash crops as it guides the destiny of a large section of the farming community as well as that of a flourishing textile industry.As the yarn manufacturing industry has undergone a technological revolution,more emphasis is given to quality of the raw
基金supported by grants from the National Natural Science Foundation of China(No.31330039)National 863 Project(No.2014AA10A604)the Bill&Melinda Gates Foundation(No.OPP51587)
文摘Utilization of heterosis has greatly contributed to rice productivity in China and many Asian countries. Superior hybrids usually show heterosis at two stages： canopy development at vegetative stage and panicle development at reproductive stage resulting in heterosis in yield. Although the genetic basis of heterosis in rice has been extensively investigated, all the previous studies focused on yield traits at maturity stage. In this study, we analyzed the genetic basis of heterosis at seedling stage making use of an ＂immortalized F2＂ population composed of 105 hybrids produced by intercrossing recombinant inbred lines （RILs） from a cross between Zhenshan 97 and Minghui 63, the parents of Shanyou 63, which is an elite hybrid widely grown in China. Eight seedling traits, seedling height, tiller number, leaf number, root number, maximum root length, root dry weight, shoot dry weight and total dry weight, were investigated using hydroponic culture. We analyzed single-locus and digenic genetic effects at the whole genome level using an ultrahigh-density SNP bin map obtained by population re-sequencing. The analysis revealed large numbers of heterotic effects for seedling traits including dominance, over- dominance and digenic dominance （epistasis） in both positive and negative directions. Overdominance effects were prevalent for all the traits, and digenic dominance effects also accounted for a large portion of the genetic effects. The results suggested that cumulative small advantages of the single-locus effects and two-locus interactions, most of which could not be detected statistically, could explain the genetic basis of seedling heterosis of the F1 hybrid.
文摘Immortalized F2 population of rice (Oryza sativa L.) was developed by randomly mating F1 among recombinant inbred (RI) lines derived from (Zhenshan 97B×Minghui 63),which allowed replications within and across environments.QTL (quantitative trait loci) mapping analysis on kilo-grain weight of immortalized F2 population was performed by using newly developed software for QTL mapping,QTL Mapper 2.0. Eleven distinctly digenic epistatic loci included a total of 15 QTL were located on eight chromosomes.QTL main effects of additive,dominance,and additive×additive,additive×dominance,and dominance×dominance interactions were estimated.Interaction effects between QTL main effects and environments (QE) were predicted.Less than 40% of single effects,most of which were additive effects,for identified QTL were significant at 5% level.The directional difference for QTL main effects suggested that these QTL were distributed in parents in the repulsion phase.This should make it feasible to improve kilo-grain weight of both parents by selecting appropriate new recombinants. Only few of the QE interaction effects were significant.Application prospect for QTL mapping achievements in genetic breeding was discussed.
基金supponed by National Natural Science Foundation of China(No.30270809).
文摘The classification and inheritance of rice starch RVA profiles were studied by testing RVA profiles of F2 clonally propagated population and some varieties, including japonica, indica, and glutinous types. All the RVA profiles of accessions could be divided into six kinds based on the cluster analysis, that is A, B, C, D, E and F. Feature profile of sticky variety was type A. The profiles of indica varieties could be presented as B, C, D, E and F types and that of japonica varieties fell into D, E and F types.RVA profiles of the rice were mainly affected by apparent amylose content (AAC), but the difference of RVA profiles could also be detected in the varieties with similar AAC. The close relationship between RVA profile indices and sensory of low or middle AAC varieties suggested that the RVA profiles can be used as indirect index to evaluate eating and cooking quality. In four hybrid combinations, the component indices of RVA profiles of F1 were between those of its parents except peak viscosity and pasting temperature. Also, in F2 clonally propagated population, all the components of the RVA profiles showed continuous segregation,suggesting that all of them were controlled by a series of minor genes, although Wx gene may play an important role in determining the RVA profiles. These results may provide some new information useful for rice quality breeding program.
文摘ALTHOUGH soybean is one of world’s leading sources of seed oil and seed protein, the develop-ment of its genetic map has lagged behind that of other crops such as rice and maize. The maincauses for this can be attributed to the lack of genetic diversity among soybean accessions, thepaucity of classical markers, the big size and complexity of the genome, and the small size anddifficulty in distinguishing of the chromosomes. The classical genetic map of
文摘Soybean mosaic virus （SMV） is one of the most serious diseases affecting soy-bean yield. Recombination inbred lines （RILs） are common materials for resistance genetic research. However, the population construction always takes quite a long time which pro-long the breading process. Shoot-cutting is a well-established technique for plant multipli-cation. It has high successful ratio in soybean. In this study, we use shoot-cutting to multiply two F2 populations from the crosses of susceptible and resistant varieties. Soybean plants can be multiplied from 1 into 3 homogenous ones within 30 days, bringing on well-grown plants with normal seeds. The SMV resistance from cutting-shoot plants was consistent with that from original plants. When shoot-cutting is applied in a F2 population, the pheno-typic and genotypic data can be simultaneously collected and corresponding saved during population development. The genetic research and resistant breeding can be effectively promoted by this technology.
基金supported by the Chinese National Foundation to Outstanding Young ScientistsNational Natural Science Foundation of China(Grant No.30170462)National High-Tech Project.
文摘Myostatin, a new member of the TGF-p superfamily, is predominantly expressed in skeletal muscle cells and functions as a negative regulator of skeletal muscle growth in animals. Recently, we have reported three single nucleotide polymorphisms (SNPs) in the chicken my-ostatin gene. Herein, we investigate the association of those SNPs with the production traits in a F2 chicken line derived from Broilers crossing to Silky with the least square analysis. The results show that the BB and AA genotypes are strongly associated with abdominal fat weight (AFW), abdominal fat percentage (AFP), and birth weight (BW) (P < 0.05). Breast muscle percentage (BMP) of the AA type is higher than that of the AB type. The breast muscle weight and breast muscle percentages of F2 individuals have significant difference between CC and DD genotypes (P< 0.05). Breast muscle weight (BMW) of EF birds is higher than that of EE birds (P< 0.05). In this report, we present the first genetic evidence to show that chicken myostatin not only plays an important role in controlling skeletal muscle growth and differentiation, but also may be involved in regulation of adipose growth in chicken.
基金the National Basic Research Development Program and National Natural Science Foundation of China (Grant No. 39725022).
文摘Fattiness is an important parameter to estimate meat quality, which has high heritability. In this experiment, F2 chickens derived from Broilers crossing to Silky were used to study the effect of extracellular fatty acid binding protein (EX-FABP) gene on abdominal fat accumulation. 1.6 kb of the 5′ region of the gene was amplified by six pairs of primers, and then single nucleotide poly-morphisms (SNPs) were detected by the technique of single strand conformation polymorphism (SSCP) and then confirmed by sequencing. There were four nucleotides variations found, A-G at -1807, C-A at -1805, T-C at -1011 and a C insertion at -1000 respectively. The result of least square analysis suggests that the birds with BB genotype defined by the second pair of primer have a higher abdominal fat weight and abdominal fat percentage than the birds with the other genotypes (AA and AB). It implied that EX-FABP gene could be a candidate locus or linked to a major gene to significantly affect abdominal fat traits in chicken.
