Objective:To Find the core targets and drug action mechanism of Si Miao decoction for the treatment of acute gouty arthritis.Methods:Through the TCMSP database,the chemical composition of all the drugs in Si Miao deco...Objective:To Find the core targets and drug action mechanism of Si Miao decoction for the treatment of acute gouty arthritis.Methods:Through the TCMSP database,the chemical composition of all the drugs in Si Miao decoction was obtained.The Perl script was compiled and the UniProt database was searched to determine the corresponding target of the chemical composition.Then,the disease databases such as OMIM,DisGeNET,and GeneCards were searched in order to determine acute gouty arthritis Related targets.Finally,screen common targets for drugs and diseases,use the STRING database and Cytoscape software to build a network control map of drugs-chemical components-targets-disease.Use R language software to screen common targets and find the four best The core targets of San for the treatment of acute gouty arthritis.The GO and KEGG analysis of the core targets were performed to clarify the core targets and mechanism of Si Miao decoction for the treatment of gout.Results:There are 64 effective chemical components in Si Miao decoction,197 genetic targets,600 disease targets,and 58 common targets.It is predicted that IL6,VEGFA,IL1B,JUN,PTGS2,and CCL2 may be treated by Si Miao decoction for gout The core target of arthritis.GO enrichment analysis identified 85 entries,of which biological processes mainly included the regulation of cytokine activity,protease activation,nucleic acid expression,etc.;KEGG pathway enrichment analysis identified 135 signaling pathways,of which signaling pathways involved the IL-17 signaling pathway,TNF signaling pathway,Th17 cell differentiation and other pathways.Conclusion:Si Miao decoction acts on acute gouty arthritis by regulating the occurrence of inflammation,and has significant anti-inflammatory and immune effects.The formula is rigorous and scientific,and it is worthy of clinical application.展开更多
目的研究中药复方桃红四物汤(Tao Hong Si Wu decoction,THSWD)治疗大脑中动脉闭塞(middle cerebral artery occlusion,MCAO)大鼠长链非编码RNA(long non-coding RNA,lncRNA)的表达,并确定THSWD治疗MCAO大鼠可能的分子机制。方法从对照...目的研究中药复方桃红四物汤(Tao Hong Si Wu decoction,THSWD)治疗大脑中动脉闭塞(middle cerebral artery occlusion,MCAO)大鼠长链非编码RNA(long non-coding RNA,lncRNA)的表达,并确定THSWD治疗MCAO大鼠可能的分子机制。方法从对照组、MCAO组和MCAO+THSWD组各获得3个大脑半球组织。采用RNA测序技术鉴定三组中的lncRNA基因表达。鉴定了THSWD调节的lncRNA基因,然后构建了THSWD调节的lncRNA-mRNA网络。通过MCODE插件鉴定lncRNA-mRNA网络的模块。基因本体(gene ontology,GO)和京都基因与基因组百科全书数据库(kyoto encyclopedia of genes and genomes,KEGG)用于分析富集的生物功能和信号通路。鉴定了THSWD调节的lncRNA的顺式和反式调控基因。采用逆转录实时定量聚合酶链式反应(RT-qPCR)验证lncRNA。分子对接用于验证lncRNA-mRNA网络靶点和通路相关蛋白结合能力。结果在MCAO大鼠中,THSWD共调节了302个lncRNA。生物信息学分析表明,一些核心lncRNA可能在THSWD治疗MCAO大鼠中发挥重要作用,此外,我们进一步发现THSWD可能也通过lncRNA-mRNA网络以及网络富集的补体和凝血级联反应等多通路治疗MCAO大鼠。分子对接结果表明,THSWD活性化合物没食子酸和苦杏仁苷与蛋白质靶点具有一定的结合能力。结论THSWD可以通过调节lncRNA保护MCAO大鼠脑损伤,为THSWD治疗缺血性中风提供了新见解。展开更多
目的:利用网络药理学和分子对接技术对四鲜汤治疗急性白血病(AcuteLeukemia,AL)的作用机制进行研究。方法:通过中药系统药理学数据库与分析平台(Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform,TCM...目的:利用网络药理学和分子对接技术对四鲜汤治疗急性白血病(AcuteLeukemia,AL)的作用机制进行研究。方法:通过中药系统药理学数据库与分析平台(Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform,TCMSP)、中药分子机制生物信息学分析工具(Bioinformatics Analysis Tool for Molecular Mechanism of Traditional Chinese Medicine,BATMAN—TCM)和中医药百科全书数据库(Encyclopedia of Traditional Chinese Medicine,ETCM)检索并获取鲜药复方四鲜汤组方中药(生地、白茅根、小蓟、蒲公英)的化学成分,建立鲜药复方-四鲜汤的天然药物活性化学成分数据集;检索人类基因数据库(Human Gene Data Base,Gencards)、人类疾病相关基因和变异的信息的数据库(Database of Gene-Disease Associations,DisGeNET)、在线生物信息学和化学信息学数据库(Database for Drug and Drug Target Info,DrugBank)、人类疾病数据库(Human Disease Database,MalaCards)以获得AL疾病相关靶点,建立疾病靶点数据库。获取药物以及疾病的交集靶点后,在线画出两者共同靶点venn图;利用String11.5平台构建药物疾病蛋白互作网络;利用cytoscape3.8.2软件构建“药物—疾病—靶点—信号通路”网络,获取相关靶点网络拓扑参数。结果:经TcMSp\BAT-MAN—TcM和ETcM三个数据库检索,获得四鲜汤活性成分30个,相关靶点677个;通过Gencards、DrugBank、MalaCards和DisGeNET四个数据库获得12110个AL疾病潜在靶点;通过R4.2.2平台的ClusterProfiler软件包获得生物功能富集(Gene Ontology,GO)信息条目1011条,其中生物过程(Biological Process,BP)467条,分子功能(Molecular Function,MF)236条,细胞组分(Cellular Component,CC)308条;获得富集的京都基因与基因组百科全书(Kyoto Encyclopedia of Genesand Genomes,KEGG)信号通路220条,主要涉及化学致癌受体激活、脂质与动脉粥样硬化、流体剪切力与动脉粥样硬化、前列腺癌、AGE-RAGE信号通路在糖尿病并发症中的作用等;网络拓扑分析发现,四鲜汤治疗AL疾病作用的主要活性成分有γ-氨基丁酸、腺嘌呤核苷、槲皮素、东莨菪碱和蒲公英萜醇等化合物。结论:四鲜汤治疗AL是一种多成分多靶点多信号通路的共同调节过程,网络药理学为阐明四鲜汤治疗AL的作用机理提供了坚实的研究基础。展开更多
目的分析四妙勇安汤的研究热点、研究趋势和处方配伍规律。方法纳入中国知识资源总库(CNKI)、万方数据知识服务平台V2.0(万方数据)、维普中文期刊服务平台(VIP)、中国生物医学文献数据库(SinoMed)、Pubmed、Web of Science(WOS)自建库至...目的分析四妙勇安汤的研究热点、研究趋势和处方配伍规律。方法纳入中国知识资源总库(CNKI)、万方数据知识服务平台V2.0(万方数据)、维普中文期刊服务平台(VIP)、中国生物医学文献数据库(SinoMed)、Pubmed、Web of Science(WOS)自建库至2022年12月31日的四妙勇安汤相关文献为研究对象,应用CiteSpace软件进行可视化分析,统计具体频次;以2006~2022年的四妙勇安汤验案建立处方数据库,形成药物共现复杂网络,并进行分析。结果共纳入文献1086篇,医学院校及其附属医院是研究主力,血栓闭塞性脉管炎、糖尿病足、冠心病、痛风性关节炎、类风湿关节炎是四妙勇安汤的主治病种,四妙勇安汤及其加减方对相关疾病的治疗是研究重点,基础研究主要关注该方的抗动脉粥样硬化相关机制。该方常配伍黄芪、地黄、赤芍、苍术、黄柏等中药。结论四妙勇安汤是中医研究的热点方剂之一,其临床适应证的拓展和处方用药配伍有一定规律可循,其药理作用机制还需深入研究。展开更多
基金National Natural Resources Foundation program(No.81373802)Beijing Natural Science Foundation(No.7172244)Beijing Science and Technology Project(No.Z191100006619024)
文摘Objective:To Find the core targets and drug action mechanism of Si Miao decoction for the treatment of acute gouty arthritis.Methods:Through the TCMSP database,the chemical composition of all the drugs in Si Miao decoction was obtained.The Perl script was compiled and the UniProt database was searched to determine the corresponding target of the chemical composition.Then,the disease databases such as OMIM,DisGeNET,and GeneCards were searched in order to determine acute gouty arthritis Related targets.Finally,screen common targets for drugs and diseases,use the STRING database and Cytoscape software to build a network control map of drugs-chemical components-targets-disease.Use R language software to screen common targets and find the four best The core targets of San for the treatment of acute gouty arthritis.The GO and KEGG analysis of the core targets were performed to clarify the core targets and mechanism of Si Miao decoction for the treatment of gout.Results:There are 64 effective chemical components in Si Miao decoction,197 genetic targets,600 disease targets,and 58 common targets.It is predicted that IL6,VEGFA,IL1B,JUN,PTGS2,and CCL2 may be treated by Si Miao decoction for gout The core target of arthritis.GO enrichment analysis identified 85 entries,of which biological processes mainly included the regulation of cytokine activity,protease activation,nucleic acid expression,etc.;KEGG pathway enrichment analysis identified 135 signaling pathways,of which signaling pathways involved the IL-17 signaling pathway,TNF signaling pathway,Th17 cell differentiation and other pathways.Conclusion:Si Miao decoction acts on acute gouty arthritis by regulating the occurrence of inflammation,and has significant anti-inflammatory and immune effects.The formula is rigorous and scientific,and it is worthy of clinical application.
文摘目的研究中药复方桃红四物汤(Tao Hong Si Wu decoction,THSWD)治疗大脑中动脉闭塞(middle cerebral artery occlusion,MCAO)大鼠长链非编码RNA(long non-coding RNA,lncRNA)的表达,并确定THSWD治疗MCAO大鼠可能的分子机制。方法从对照组、MCAO组和MCAO+THSWD组各获得3个大脑半球组织。采用RNA测序技术鉴定三组中的lncRNA基因表达。鉴定了THSWD调节的lncRNA基因,然后构建了THSWD调节的lncRNA-mRNA网络。通过MCODE插件鉴定lncRNA-mRNA网络的模块。基因本体(gene ontology,GO)和京都基因与基因组百科全书数据库(kyoto encyclopedia of genes and genomes,KEGG)用于分析富集的生物功能和信号通路。鉴定了THSWD调节的lncRNA的顺式和反式调控基因。采用逆转录实时定量聚合酶链式反应(RT-qPCR)验证lncRNA。分子对接用于验证lncRNA-mRNA网络靶点和通路相关蛋白结合能力。结果在MCAO大鼠中,THSWD共调节了302个lncRNA。生物信息学分析表明,一些核心lncRNA可能在THSWD治疗MCAO大鼠中发挥重要作用,此外,我们进一步发现THSWD可能也通过lncRNA-mRNA网络以及网络富集的补体和凝血级联反应等多通路治疗MCAO大鼠。分子对接结果表明,THSWD活性化合物没食子酸和苦杏仁苷与蛋白质靶点具有一定的结合能力。结论THSWD可以通过调节lncRNA保护MCAO大鼠脑损伤,为THSWD治疗缺血性中风提供了新见解。
文摘目的:利用网络药理学和分子对接技术对四鲜汤治疗急性白血病(AcuteLeukemia,AL)的作用机制进行研究。方法:通过中药系统药理学数据库与分析平台(Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform,TCMSP)、中药分子机制生物信息学分析工具(Bioinformatics Analysis Tool for Molecular Mechanism of Traditional Chinese Medicine,BATMAN—TCM)和中医药百科全书数据库(Encyclopedia of Traditional Chinese Medicine,ETCM)检索并获取鲜药复方四鲜汤组方中药(生地、白茅根、小蓟、蒲公英)的化学成分,建立鲜药复方-四鲜汤的天然药物活性化学成分数据集;检索人类基因数据库(Human Gene Data Base,Gencards)、人类疾病相关基因和变异的信息的数据库(Database of Gene-Disease Associations,DisGeNET)、在线生物信息学和化学信息学数据库(Database for Drug and Drug Target Info,DrugBank)、人类疾病数据库(Human Disease Database,MalaCards)以获得AL疾病相关靶点,建立疾病靶点数据库。获取药物以及疾病的交集靶点后,在线画出两者共同靶点venn图;利用String11.5平台构建药物疾病蛋白互作网络;利用cytoscape3.8.2软件构建“药物—疾病—靶点—信号通路”网络,获取相关靶点网络拓扑参数。结果:经TcMSp\BAT-MAN—TcM和ETcM三个数据库检索,获得四鲜汤活性成分30个,相关靶点677个;通过Gencards、DrugBank、MalaCards和DisGeNET四个数据库获得12110个AL疾病潜在靶点;通过R4.2.2平台的ClusterProfiler软件包获得生物功能富集(Gene Ontology,GO)信息条目1011条,其中生物过程(Biological Process,BP)467条,分子功能(Molecular Function,MF)236条,细胞组分(Cellular Component,CC)308条;获得富集的京都基因与基因组百科全书(Kyoto Encyclopedia of Genesand Genomes,KEGG)信号通路220条,主要涉及化学致癌受体激活、脂质与动脉粥样硬化、流体剪切力与动脉粥样硬化、前列腺癌、AGE-RAGE信号通路在糖尿病并发症中的作用等;网络拓扑分析发现,四鲜汤治疗AL疾病作用的主要活性成分有γ-氨基丁酸、腺嘌呤核苷、槲皮素、东莨菪碱和蒲公英萜醇等化合物。结论:四鲜汤治疗AL是一种多成分多靶点多信号通路的共同调节过程,网络药理学为阐明四鲜汤治疗AL的作用机理提供了坚实的研究基础。
文摘目的分析四妙勇安汤的研究热点、研究趋势和处方配伍规律。方法纳入中国知识资源总库(CNKI)、万方数据知识服务平台V2.0(万方数据)、维普中文期刊服务平台(VIP)、中国生物医学文献数据库(SinoMed)、Pubmed、Web of Science(WOS)自建库至2022年12月31日的四妙勇安汤相关文献为研究对象,应用CiteSpace软件进行可视化分析,统计具体频次;以2006~2022年的四妙勇安汤验案建立处方数据库,形成药物共现复杂网络,并进行分析。结果共纳入文献1086篇,医学院校及其附属医院是研究主力,血栓闭塞性脉管炎、糖尿病足、冠心病、痛风性关节炎、类风湿关节炎是四妙勇安汤的主治病种,四妙勇安汤及其加减方对相关疾病的治疗是研究重点,基础研究主要关注该方的抗动脉粥样硬化相关机制。该方常配伍黄芪、地黄、赤芍、苍术、黄柏等中药。结论四妙勇安汤是中医研究的热点方剂之一,其临床适应证的拓展和处方用药配伍有一定规律可循,其药理作用机制还需深入研究。