Soybean(Glycine max)is an important and valuable crop,providing oil and proteins for both humans and animals.Seed weight is a key trait that determines soybean yields;however,the genes and mechanisms controlling seed ...Soybean(Glycine max)is an important and valuable crop,providing oil and proteins for both humans and animals.Seed weight is a key trait that determines soybean yields;however,the genes and mechanisms controlling seed weight remain poorly understood.Here,we used genome-wide association study(GWAS)and joint linkage mapping to identify a ubiquitin-specific protease,GmSW17.1,which regulates 100-seed weight in soybean.Two natural allelic variants of GmSW17.1 resulted in significantly different 100-seed weight,with GmSW17.1T conferring heavier seeds.We used CRISPR/Cas9 technology to knock out GmSW17.1,resulting in lighter and smaller seeds;however,these mutants produced more seeds than the wild type,resulting in similar overall yields.Owing to the increased number of seeds,we determined that GmSW17.1 is highly transcribed in developing seeds,and its encoded protein physically interacts in the nucleus with GmSGF11,which plays a crucial role in the deubiquitinating pathway.Analysis of genomic sequences from more than 1714 soybean accessions suggested that the natural allele GmSW17.1T was selected during the domestication and genetic improvement,resulting in its rapid expansion in cultivated soybean.These findings provide important insights into the role of GmSW17.1 in 100-seed weight and offer valuable clues for the molecular breeding of soybean.展开更多
100-seed weight is a very complicated quantitative trait of yield. The study of gene mapping for yield trait in soybean is very important for application. However, the mapping result of 100-seed weight was dispersed, ...100-seed weight is a very complicated quantitative trait of yield. The study of gene mapping for yield trait in soybean is very important for application. However, the mapping result of 100-seed weight was dispersed, the public map should be chosen which was suitable for the published results integrated, and to improve yield. In this research, an integrated map of 100-seed weight QTLs in soybean had been established with soymap2 published in 2004 as a reference map. QTLs of 100-seed weight in soybean were collected in recent 20 yr. With the software BioMercator 2.1, QTLs from their own maps were projected to the reference map. From published papers, 65 QTLs of 100-seed weight were collected and 53 QTLs were integrated, including 17 reductive effect QTLs and 36 additive effect QTLs. 12 clusters of QTLs were found in the integrated map. A method of meta-analysis was used to narrow down the confidence interval, and 6 additive QTLs and 6 reductive QTLs and their corresponding markers were obtained respectively. The minimum confidence interval （C.I.） was shrunk to 1.52 cM. These results would lay the foundation for marker-assisted selection and mapping QTL precisely, as well as QTL gene cloning in soybean.展开更多
Birth weight(BW)and days to 100 kg(D100)are important economic traits that are both affected by polygenes.However,the genetic architecture of these quantitative traits is still elusive.Genotyping-by-sequencing(GBS)dat...Birth weight(BW)and days to 100 kg(D100)are important economic traits that are both affected by polygenes.However,the genetic architecture of these quantitative traits is still elusive.Genotyping-by-sequencing(GBS)data containing a large number of single nucleotide polymorphisms(SNPs)have become a powerful tool in genomic analysis.To better understand their complex genetic structure,a total of 600 Yorkshire pigs were sequenced using GBS technology.After quality control,279787 SNPs were generated for subsequent genome-wide association study(GWAS).A total of 30 genome-wide SNPs(P<1.79 E–07)were identified for D100.Furthermore,a total of 22 and 2 suggestive SNPs(P<3.57 E–06)were detected for D100 and BW,respectively.Of these,one locus located on SSC12(position:46226512 bp)were evaluated to affect both BW and D100 in Yorkshire pigs,indicating the pleiotropism in different traits.Considering the function of candidate genes,two genes,NSRP1 and DOCK7,were suggested as the most promising candidate genes involved in growth traits.Thus,use of GBS is able to identify novel variants and potential candidate genes for BW and D100,and provide an opportunity for improving pig growth traits using genomic selection in pigs.展开更多
To investigate the relationship of milk line position with grain weight and mechanized harvest of summer corn in Huang-Huai-Hai Region, 8 varieties （A, B, C, D, E, F, G, H） with large planting areas were selected to...To investigate the relationship of milk line position with grain weight and mechanized harvest of summer corn in Huang-Huai-Hai Region, 8 varieties （A, B, C, D, E, F, G, H） with large planting areas were selected to measure the grain filling rate, 100-grain weight, water content and milk line position, and the correlation was analyzed. Results showed that when the milk line position was 90%, the grain filling of all the 8 varieties finished and 100-grain weight reached the highest value, which was 43.02 g. The grain filling time was in positive correlation with 100-grain weight. However, when the milk line position completely disappeared, the 100-grain weight was reduced by 8.66% at most. There was no significant difference during the periods of grain weight rising, but in the periods of grain weight falling, the traits of D, E, H were significantly different with the other varieties, and water loss rate of C and A showed significant difference with the other six varieties. The water content of grain was negatively correlated with milk line position. When the milk line percentage was 90% , the grain water content was less than 30% . The key factor influencing the mechanized harvest of summer corn is harvesting time, rather than the varieties. Moreover, milk-line position of 90% is the best time for harvest; if the harvest is too late, the yield will be reduced with varying degrees.展开更多
基金supported by Research and Application of Technological Innovation in Inner Mongolia Soybean Industry (2023DXZD0002)the National Natural Science Foundation of China (32201756)+4 种基金the National Key Research and Development Program of China (2021YFD1201600)the Agricultural Science and Technology Innovation Program (ASTIP)of Chinese Academy of Agricultural Sciences (CAAS-ZDRW202109,01-ICS-05)the earmarked fund for CARS (CARS-04-PS01)Scientific Innovation 2030 Project (2022ZD0401703)the National Science Foundation for Post-doctoral Scientists of China (2021 M703554).
文摘Soybean(Glycine max)is an important and valuable crop,providing oil and proteins for both humans and animals.Seed weight is a key trait that determines soybean yields;however,the genes and mechanisms controlling seed weight remain poorly understood.Here,we used genome-wide association study(GWAS)and joint linkage mapping to identify a ubiquitin-specific protease,GmSW17.1,which regulates 100-seed weight in soybean.Two natural allelic variants of GmSW17.1 resulted in significantly different 100-seed weight,with GmSW17.1T conferring heavier seeds.We used CRISPR/Cas9 technology to knock out GmSW17.1,resulting in lighter and smaller seeds;however,these mutants produced more seeds than the wild type,resulting in similar overall yields.Owing to the increased number of seeds,we determined that GmSW17.1 is highly transcribed in developing seeds,and its encoded protein physically interacts in the nucleus with GmSGF11,which plays a crucial role in the deubiquitinating pathway.Analysis of genomic sequences from more than 1714 soybean accessions suggested that the natural allele GmSW17.1T was selected during the domestication and genetic improvement,resulting in its rapid expansion in cultivated soybean.These findings provide important insights into the role of GmSW17.1 in 100-seed weight and offer valuable clues for the molecular breeding of soybean.
基金supported by the Chinese Transgenic Specific Technology Programs (2009ZX08009-013B)
文摘100-seed weight is a very complicated quantitative trait of yield. The study of gene mapping for yield trait in soybean is very important for application. However, the mapping result of 100-seed weight was dispersed, the public map should be chosen which was suitable for the published results integrated, and to improve yield. In this research, an integrated map of 100-seed weight QTLs in soybean had been established with soymap2 published in 2004 as a reference map. QTLs of 100-seed weight in soybean were collected in recent 20 yr. With the software BioMercator 2.1, QTLs from their own maps were projected to the reference map. From published papers, 65 QTLs of 100-seed weight were collected and 53 QTLs were integrated, including 17 reductive effect QTLs and 36 additive effect QTLs. 12 clusters of QTLs were found in the integrated map. A method of meta-analysis was used to narrow down the confidence interval, and 6 additive QTLs and 6 reductive QTLs and their corresponding markers were obtained respectively. The minimum confidence interval （C.I.） was shrunk to 1.52 cM. These results would lay the foundation for marker-assisted selection and mapping QTL precisely, as well as QTL gene cloning in soybean.
基金supported by grants from the Sichuan Science and Technology Program,China(2020YFN0024)the Sichuan Innovation Team of Pig,Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province(sccxtd-2020-08)+2 种基金the National Key R&D Program of China(2018YFD0501204)the National Natural Science Foundation of China(31530073 and C170102)the the China Agricultural Research System of MOF and MARA(CARS-35-01A)。
文摘Birth weight(BW)and days to 100 kg(D100)are important economic traits that are both affected by polygenes.However,the genetic architecture of these quantitative traits is still elusive.Genotyping-by-sequencing(GBS)data containing a large number of single nucleotide polymorphisms(SNPs)have become a powerful tool in genomic analysis.To better understand their complex genetic structure,a total of 600 Yorkshire pigs were sequenced using GBS technology.After quality control,279787 SNPs were generated for subsequent genome-wide association study(GWAS).A total of 30 genome-wide SNPs(P<1.79 E–07)were identified for D100.Furthermore,a total of 22 and 2 suggestive SNPs(P<3.57 E–06)were detected for D100 and BW,respectively.Of these,one locus located on SSC12(position:46226512 bp)were evaluated to affect both BW and D100 in Yorkshire pigs,indicating the pleiotropism in different traits.Considering the function of candidate genes,two genes,NSRP1 and DOCK7,were suggested as the most promising candidate genes involved in growth traits.Thus,use of GBS is able to identify novel variants and potential candidate genes for BW and D100,and provide an opportunity for improving pig growth traits using genomic selection in pigs.
基金Supported by the"Corn Industry Technology System of Henan Province-Shangqiu Comprehensive Test Station"of the Special Fund for Modern Agricultural Technology System of Henan Province(Z2015-02-02)the"Research and Application of Full Mechanization and Supporting High-Yield Cultivation Technology of Summer Corn"of the Key Science and Technology Project of Shangqiu City(153026)~~
文摘To investigate the relationship of milk line position with grain weight and mechanized harvest of summer corn in Huang-Huai-Hai Region, 8 varieties （A, B, C, D, E, F, G, H） with large planting areas were selected to measure the grain filling rate, 100-grain weight, water content and milk line position, and the correlation was analyzed. Results showed that when the milk line position was 90%, the grain filling of all the 8 varieties finished and 100-grain weight reached the highest value, which was 43.02 g. The grain filling time was in positive correlation with 100-grain weight. However, when the milk line position completely disappeared, the 100-grain weight was reduced by 8.66% at most. There was no significant difference during the periods of grain weight rising, but in the periods of grain weight falling, the traits of D, E, H were significantly different with the other varieties, and water loss rate of C and A showed significant difference with the other six varieties. The water content of grain was negatively correlated with milk line position. When the milk line percentage was 90% , the grain water content was less than 30% . The key factor influencing the mechanized harvest of summer corn is harvesting time, rather than the varieties. Moreover, milk-line position of 90% is the best time for harvest; if the harvest is too late, the yield will be reduced with varying degrees.
