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基于部分18S rDNA,28S rDNA和COI基因序列的索科线虫亲缘关系 被引量:12
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作者 汪江一 徐芬 +1 位作者 刘绪生 王国秀 《动物学报》 SCIE CAS CSCD 北大核心 2007年第5期835-844,共10页
通过PCR扩增获得我国常见昆虫病原索科线虫6属10种18S rDNA、28S rDNA(D3区)和COI基因序列,结合来自GenBank中6属10种索科线虫的18S rDNA同源序列,用邻接法和最大简约法构建系统进化树。结果显示:12属索科线虫分为三大类群,第一大类群... 通过PCR扩增获得我国常见昆虫病原索科线虫6属10种18S rDNA、28S rDNA(D3区)和COI基因序列,结合来自GenBank中6属10种索科线虫的18S rDNA同源序列,用邻接法和最大简约法构建系统进化树。结果显示:12属索科线虫分为三大类群,第一大类群是三种罗索属线虫(Romanomermis)先聚在一起,再与两索属(Amphimermis)和蛛索属(Aranimermis)线虫聚为一支;在第二大类群中,六索属(Hexamermis)、卵索属线虫(Ovomermis)和多索属(Agamermis)亲缘关系最近,先聚在一起,再与八腱索属(Octomyomermis)和Thaumamermis线虫聚为一支。第三大类群由索属(Mermis)和异索属(Allomermis)线虫以显著水平的置信度先聚在一起,再与蠓索属(Heleidomermis)和施特克尔霍夫索属(Strelkovimermis)线虫聚为一支。从遗传距离看,基于3个基因的数据集均显示索科线虫属内种间差异明显小于属间差异,武昌罗索线虫(R.wuchangensis)和食蚊罗索线虫(R.culicivorax)同属蚊幼寄生罗索属线虫,其种间的遗传距离最小。 展开更多
关键词 昆虫病原索科线虫 系统演化 18s rdna 28S rdna COI基因
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Phylogenetic Relationships of the Pentatomomorpha (Hemiptera: Heteroptera) Inferred from Nuclear 18S rDNA Sequences 被引量:9
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作者 李红梅 邓日强 王珣章 《Zoological Research》 CAS CSCD 北大核心 2006年第3期307-316,共10页
Sequences from a region of the nuclear ribosomal 18S rDNA gene of approximately 1 912 base pairs (bp) were used to generate a molecular phylogeny for the Pentatomomorpha based on 53 species representing 21 putative ... Sequences from a region of the nuclear ribosomal 18S rDNA gene of approximately 1 912 base pairs (bp) were used to generate a molecular phylogeny for the Pentatomomorpha based on 53 species representing 21 putative families. Phylogenetic analyses using the most parsimony method (MP), maximum likelihood method (ML), and neighbor joining method (NJ) showed strong support that the Pentatomomorpha lineage is a monophyly and the superfamily Aradoidea is a sister group to the remainder of the Pentatomomorpha (Trichophora). The Trichophora could be divided into two clades : one clade consisted of the monophyletic superfamilies Pentatomoidea and Pyrrhocoroidea; the other was mainly the polyphyletic superfamilies Lygaeoidea, Coreoidea and Idiostoloidea. The superfamilies Lygaeoidea and Coreoidea were both polyphyletic. Within Lygaeoidea, Piesmatidae was sister to Berytidae. They formed a clade locating at the basal of the Trichophora and distantly related to the other two families Lygaeidae and Rhyparochromidae. This research suggested that 18S rDNA was a proper marker to reconstruct the phylogeny of Pentatomomorpha that was accordant to morphological studies and the research of Li et al (2005). The Pyrrhocoroidea was further divided from the Coreoidea (s./at ). It was suggested that the Piesmatidae might be assigned as a superfamily of Pentatomomorpha rather than a family in Lygaeoidea. 展开更多
关键词 Molecular phylogeny Pentatomomorpha 18 S rdna Trichophora
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Phylogenetic analyses of four species of Ulva and Monostroma grevillei using ITS, rbcL and 18S rDNA sequence data 被引量:4
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作者 林中姮 沈颂东 +1 位作者 陈伟洲 李慧慧 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2013年第1期97-105,共9页
Chlorophyta species are common in the southern and northern coastal areas of China. In recent years, frequent green tide incidents in Chinese coastal waters have raised concerns and attracted the attention of scientis... Chlorophyta species are common in the southern and northern coastal areas of China. In recent years, frequent green tide incidents in Chinese coastal waters have raised concerns and attracted the attention of scientists. In this paper, we sequenced the 18S rDNA genes, the internal transcribed spacer (ITS) regions and the rbcL genes in seven organisms and obtained 536-566 bp long ITS sequences, 1 377-I 407 bp long rbcL sequences and 1 718-1 761 bp long partial 18S rDNA sequences. The GC base pair content was highest in the ITS regions and lowest in the rbcL genes. The sequencing results showed that the three Ulvaprolifera (or U. pertusa) gene sequences from Qingdao and Nan'ao Island were identical. The ITS, 18S rDNA and rbcL genes in U. prolifera and U. pertusa from different sea areas in China were unchanged by geographic distance. U.flexuosa had the least evolutionary distance from U. californica in both the ITS regions (0.009) and the 18S rDNA (0.002). These data verified that Ulva and Enteromorpha are not separate genera. 展开更多
关键词 ULVA ITS region RBCL 18s rdna PHYLOGENY sequences analysis
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Construction of Porphyra yezoensis Pure Line from Protoplasts and Its 18S rDNA Sequence Determination 被引量:3
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作者 LIUHongquan YUWengong +3 位作者 DAIJixun GONGQianhong SHIXiaochong YANGKunfeng 《Journal of Ocean University of China》 SCIE CAS 2004年第1期60-64,共5页
The wild Porphyra yezoensis collected from the Qingdao coast was used to prepare protoplasts by enzyme digestion. The pure line was constructed by cultivating the protoplasts. The 18S rDNA of the P. yezoensis pure lin... The wild Porphyra yezoensis collected from the Qingdao coast was used to prepare protoplasts by enzyme digestion. The pure line was constructed by cultivating the protoplasts. The 18S rDNA of the P. yezoensis pure line was cloned and sequenced. Sequence analysis was executed for this sequence and other 22 sequences retrieved from GenBank. A phylogenetic tree was constructed using the neighbor joining method. The results revealed a high diversity of 18S rDNA sequences in genus Porphyra and the considerable variation of 18S rDNA sequences in different strains of the same species P. yezoensis and P. tenera. Significant difference of 18S rDNA sequence was observed between P. yezoensis from Qingdao, China, and the two strains of P. yezoensis from Japan, but the three strains of P. yezoensis formed a stable clade in the phylogenetic tree. These results indicate the possibility of interspecies and intraspecies discrimination of Porphyra using the 18S rDNA sequences. 展开更多
关键词 Porphyra yezoensis 18s rdna sequence analysis phylogenetic tree
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Primary species recognition and phylogeny of Chondrus (Gigartinales, Rhodophyta) using 18S rDNA sequence data 被引量:1
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作者 胡自民 曾晓起 +2 位作者 ALAN T. Critchley STEVE L. Morrell 段德麟 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2007年第2期174-183,共10页
The nuclear-encoded small subunit ribosomal RNA gene (18S rDNA) of 16 isolates of Chondrus from 8 countries were sequenced. A total of 1796 nucleotides were obtained and aligned with the phylogenetic analysis conduc... The nuclear-encoded small subunit ribosomal RNA gene (18S rDNA) of 16 isolates of Chondrus from 8 countries were sequenced. A total of 1796 nucleotides were obtained and aligned with the phylogenetic analysis conducted. The results suggest that the entity from Dalian, China, regarded as C. spl is C. pinnulatus. The C. sp2 previously depicted as C. yendoi or Mazzaellajaponica may belong to genus Chondrus. So, 4 Chondrus species, i.e.C. ocellatus, C. nipponicus, C. armatus, and C. pinnulatus are distributed in China. However, the entity from Connemara, Ireland, named C. crispus, is not a Chondrus species but that ofMastocarpus stellatus, although it is morphologically similar to C. crispus. Phylogenetic analysis based on complete 18S rDNA sequence data shows that genus Chondrus includes 3 main lineages: the Northern Pacific lineage, containing C. ocellatus, C. yendoi, and C, nipponicus; C, armatus, and C. pinnulatus form the sub-North Pacific lineage; and the Northern Atlantic Ocean lineage, comprising samples of C. crispus from Canada, Portugal, Ireland, Germany and France. The phylogenetic relationships indicate that genus Chondrus might have a North Pacific ancestral origin, radiated to North Atlantic area, and then formed the species C. crispus. 展开更多
关键词 18s rdna CHONDRUS red algae PHYLOGENY species recognition
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Analysis of 18S rDNA Sequence of the Pathogen of Melon Powdery Mildew from Lands Overlaid with Sands in Ningxia
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作者 YANG Jing-ling LIU Jian-li 《Plant Diseases and Pests》 2012年第1期14-16,共3页
[Objective] The paper was to measure and analyze pathogen of 18S rDNA sequence of the pathogen of melon powdery mildew from lands overlaid with sands. [Method]The melon powdery mildew was isolated from infected plants... [Objective] The paper was to measure and analyze pathogen of 18S rDNA sequence of the pathogen of melon powdery mildew from lands overlaid with sands. [Method]The melon powdery mildew was isolated from infected plants of "Yujinxiang", a major melon variety cultivated in lands overlaid with sands in the middle arid area of Ningxia. Genome DNA was extracted from its conidia using Chelex-100 method. 18S rDNA sequence was amplified by PCR, which was analyzed by Blast after sequencing, and the phylogenetic tree was constructed. [Result] 18S rDNA sequence analysis showed that the pathogen of melon powdery mildew belonged to Podosphaera. [Conclusion] The study provided reference for biocontrol and disease-resistance breeding against melon powdery mildew. 展开更多
关键词 Melon powdery mildew 18s rdna Taxonomic identification China
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基氏蠊螨的18S rDNA分子鉴定
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作者 李梦珠 张兰香 +5 位作者 詹雨娟 褚凌渺 胡婷婷 李心玫 王严 孙恩涛 《热带病与寄生虫学》 CAS 2021年第2期101-103,111,共4页
目的基于核糖体18S r DNA基因对基氏蠊螨进行分子鉴定。方法采集和分离储藏物样本,进行螨类的形态学鉴定。提取单个螨的基因组DNA,经PCR扩增、克隆和测序获得COⅠ基因和18S r DNA基因,将所获序列进行Blast对比。检索Gen Bank数据库中蠊... 目的基于核糖体18S r DNA基因对基氏蠊螨进行分子鉴定。方法采集和分离储藏物样本,进行螨类的形态学鉴定。提取单个螨的基因组DNA,经PCR扩增、克隆和测序获得COⅠ基因和18S r DNA基因,将所获序列进行Blast对比。检索Gen Bank数据库中蠊螨属18S r DNA基因序列,利用Clustal X 1.83软件进行多序列比对,基于MEGA X软件进行序列分析并以邻接法(Neighbor-Joining,NJ)构建系统发育树。结果采集的样本经形态和COⅠ基因双重鉴定为基氏蠊螨。同时,所选取的10个基氏蠊螨的18S r DNA基因序列完全一致,均表现出A/T碱基偏向性,与同属的Blattisocius tarsalis和Blattisocius everti分别有98.73%和98.94%的同源性。基于18S r DNA基因序列的系统进化树显示,基氏蠊螨与Blattisocius tarsalis和Blattisocius everti聚为一支。结论本研究建立了基氏蠊螨基于18S r DNA基因序列的分子鉴定方法,为基氏蠊螨的准确鉴定奠定基础。 展开更多
关键词 基氏蠊螨 分子鉴定 核糖体18s rdna
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新疆五家渠鱼类水霉病原菌18S rDNA序列不同软件系统分析 被引量:1
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作者 魏冬梅 申慧 +1 位作者 陈真 王咏星 《基因组学与应用生物学》 CAS CSCD 北大核心 2019年第11期4944-4950,共7页
本研究在对新疆五家渠地区15株鱼类水霉病病原菌18S rDNA克隆测序的基础上,探讨了18S rDNA序列中G-C含量用于真菌分类的可行性,以及不同进化分析软件分析的可靠性。显示18S rDNA GC含量用于辅助分类具有一定可行性;不同软件构建的系统... 本研究在对新疆五家渠地区15株鱼类水霉病病原菌18S rDNA克隆测序的基础上,探讨了18S rDNA序列中G-C含量用于真菌分类的可行性,以及不同进化分析软件分析的可靠性。显示18S rDNA GC含量用于辅助分类具有一定可行性;不同软件构建的系统进化树拓扑结构基本一致,即不同软件应用于分类基本趋同;综合各软件分类,15株病原菌中LF04、LF01、JX03、JX01为寄生水霉,HL04、JY07、HZ、JY10、LY04、JY15、HL01为镰刀菌,JX02为腐霉,HL02为虫草科未知种,JY06与HZ02不能确定其种属。本研究为国内水霉分类研究以及鱼类水霉病的病原鉴定和后期药物防治提供一些数据。 展开更多
关键词 水霉病 系统发育树 分类 18s rdna
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Variations of 18S rDNA Loci Among Six Populations of Paeonia obovata Maxim. (Paeoniaceae) Revealed by Fluorescence In Situ Hybridization 被引量:1
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作者 Rui Luo Chao Wang Daming Zhang 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2006年第5期497-502,共6页
The localization of 18S ribosomal RNA genes (rDNA) by fluorescence in situ hybridization (FISH) had been performed for some species of Paeonla. However, the pattern of 18S rDNA loci among populations Is Indistinct... The localization of 18S ribosomal RNA genes (rDNA) by fluorescence in situ hybridization (FISH) had been performed for some species of Paeonla. However, the pattern of 18S rDNA loci among populations Is Indistinct. In the present study, we localized 18S rDNA loci on meiotic or mitotic chromosomes of six populations of Paeonla obovata Maxim. (Paeonlaceae). Different numbers of rDNA loci were found with different diploid (2n=10) populations, namely eight (Lushl and Mt. JIuhua populations), 10 (Mt. Talbal population), and seven (Mt. Guandl population), whereas tetraplold (2n=20) populations were all found with 16 loci. Aii rDNA loci were mapped near teiomeres of mitotic chromosomes and there was no chromosome with two loci. The present results show that molecular cytological polymorphlsm exists among P. obovata diploid populations, Indicating that structural variations occurred frequently during the evolutionary history of this species, accompanied with differentiation among populations. 展开更多
关键词 CYTOTYPE fluorescence in situ hybridization (FISH) Paeonia obovata 18s rdna tetraploid.
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rDNA介导的乳酸克鲁维酵母整合型表达载体的构建及初步验证
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作者 孙海烨 张梁 +3 位作者 李由然 顾正华 丁重阳 石贵阳 《食品与生物技术学报》 CAS CSCD 北大核心 2019年第10期87-97,共11页
构建一个适用于乳酸克鲁维酵母(Kluyveromyces lactis)稳定的整合型表达载体,并通过鼠灰链霉菌(Streptomyces murinus)来源的腺苷酸脱氨酶基因(AMPD)的表达对该载体进行初步验证。以质粒pMD 19T-simple为空骨架,K.lactis GG799来源的18S... 构建一个适用于乳酸克鲁维酵母(Kluyveromyces lactis)稳定的整合型表达载体,并通过鼠灰链霉菌(Streptomyces murinus)来源的腺苷酸脱氨酶基因(AMPD)的表达对该载体进行初步验证。以质粒pMD 19T-simple为空骨架,K.lactis GG799来源的18S rDNA序列为同源重组位点,酿酒酵母(Saccharomyces cerevisiae)来源的半乳糖苷酶启动子(pScGAL7)为外源基因调控元件,乙酰胺酶基因(amdS)为筛选标记,AMPD为报告基因,构建重组表达载体pTRGA-amdS。载体经Sac II线性化后,去除了大肠杆菌(Escherichia coli)来源的ori和氨苄青霉素抗性基因(Ampr),将同源重组片段电转化K.lactis GG799得到重组菌,利用实时荧光定量PCR(RT-QPCR)测定重组菌AMPD基因整合拷贝数为1~3,AMP脱氨酶酶活测定结果表明:酶活与拷贝数呈正相关,含3个整合拷贝的重组菌在半乳糖诱导下酶活提高了32.6%,达到(590±13.33)U/mL。在无选择压力下重组菌连续生长58世代稳定性为98.59%。通过载体pTRGA-amdS的构建与应用实现了外源基因在K.lactis中的稳定表达,初步探究了18S rDNA在同源重组中的作用,为K.lactis的进一步分子改造提供参考。 展开更多
关键词 乳酸克鲁维酵母 18s rdna 整合表达 AMP脱氨酶 RT-QPCR 拷贝数
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Phylogenetic relationship of Podocopida (Ostracoda: Podocopa) based on 18S ribosomal DNA sequences 被引量:3
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作者 YU Na ZHAO Meiying +1 位作者 CHEN Liqiao YANG Pin 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2006年第2期99-108,共10页
Nucleotide sequences from 18S rDNA of 11 ostracodes, which represent four suborders and six superfamilies of podocopidan, were determined. The phylogenetic relationships were analyzed based on three kinds of methods (... Nucleotide sequences from 18S rDNA of 11 ostracodes, which represent four suborders and six superfamilies of podocopidan, were determined. The phylogenetic relationships were analyzed based on three kinds of methods (maximum-likelihood, maximum-parsimony, and neighbor-joining), and the three topologies gained were basically similar. The results have showed that (1) a monophyletic Podocopida was supported strongly; (2) the phylogenetic relationships of four suborders were (Darwinulocopina plus (Bairdiocopina plus (Cytherocopina plus Cypridocopina))), which indicated that a close relationship between Cytherocopina and Cypridocopina, and Darwinulocopina had separated early from the main podocopinan; (3) Cypridocopinan formed a monophyletic group, among which the phylogenetic relationship of three superfamilies was (Cypridoidea plus (Macrocypridoidea plus Pontocypridoidea)). 展开更多
关键词 18s rdna nuclear gene molecular phylogeny Podocopida OSTRACODA
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Primers to block the amplification of symbiotic apostome ciliate 18S rRNA gene in a PCR-based copepod diet study
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作者 衣晓燕 张寰 刘光兴 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2014年第3期515-521,共7页
Pelagic copepods play an important role in the marine food web. However, a full understanding of the ecological status of this zooplankton group depends on the careful study of their natural diets. In previous PCR-bas... Pelagic copepods play an important role in the marine food web. However, a full understanding of the ecological status of this zooplankton group depends on the careful study of their natural diets. In previous PCR-based copepod diet studies, we found many apostome ciliates that live symbiotically under the exoskeleton of the copepods, and their sequences were often over-represented in the 18S rRNA gene (18S rDNA) libraries. As a first step to address this issue, we designed three apostome ciliate 18S rDNA blocking primers, and tested their blocking efficiency against apostome ciliate 18S rDNA under various PCR conditions. Using a semi-quantitative PCR method, we optimized the conditions to efficiently amplify the 18S rDNA of the prey while simultaneously excluding the symbiotic apostome ciliates. This technique will facilitate PCR-based diet studies of copepods and other zooplankton in their natural environments. 展开更多
关键词 copepod 18s rdna apostome ciliate blocking primer PCR
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鲇楚克拉虫的地理新记录及不同地理株系的比较研究
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作者 袁采莉 唐发辉 +5 位作者 杨雨婷 彭建军 谭禄奇 张雕雕 杨承忠 赵元莙 《水生生物学报》 CAS CSCD 北大核心 2024年第4期665-672,共8页
为探索地理隔离对鲇楚克拉虫(Zschokkella parasiluri Fujita,1927)株系分化的影响规律,研究对鲇楚克拉虫进行了广泛采样并获得了鲇楚克拉虫重庆沙坪坝株系(S3)、重庆渝北株系(S4)、重庆秀山株系(S5)、贵州铜仁株系(S6)及河南信阳株系(... 为探索地理隔离对鲇楚克拉虫(Zschokkella parasiluri Fujita,1927)株系分化的影响规律,研究对鲇楚克拉虫进行了广泛采样并获得了鲇楚克拉虫重庆沙坪坝株系(S3)、重庆渝北株系(S4)、重庆秀山株系(S5)、贵州铜仁株系(S6)及河南信阳株系(S7)等5个地理株系,其中重庆秀山、贵州铜仁和河南信阳为鲇楚克拉虫的地理新记录。基于形态与18S rDNA分子数据对鲇楚克拉虫不同地理株系进行了比较研究。结果表明,研究获得的鲇楚克拉虫5个地理株系的形态与原始报道及已发表的其他株系一致,主成分及显著性差异分析进一步显示,5地理株系间(S3—S7)形态量度无显著差异。联合已有分子信息的湖北株系(S1)和重庆渝北株系(S2)进行遗传学比较分析,结果显示7株系间(S1—S7)18S rDNA序列相似度为98.7%—100%,遗传距离为0—0.006。这表明,鲇楚克拉虫不同地理株系间已有一定程度的遗传分化。系统发育分析表明,鲇楚克拉虫各株系间并未形成地理种群特有的单系,地理隔离可能并非鲇楚克拉虫株系分化的决定性因素。 展开更多
关键词 地理隔离 种群分化 形态学 18s rdna 鲇楚克拉虫
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鲇病原粘孢子虫米氏碘泡虫不同株系的比较
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作者 向乾 谭禄奇 +3 位作者 彭建军 石小威 杨承忠 赵元莙 《水产学报》 CAS CSCD 北大核心 2024年第5期158-165,共8页
为研究米氏碘泡虫不同寄生部位和不同地理分布的株系差异和遗传分化情况,实验基于其形态特征、组织向性、地理分布、18S rDNA序列相似度、遗传距离、系统发育,对米氏碘泡虫各株系进行比较分析。结果显示,米氏碘泡虫各株系孢子形态特征... 为研究米氏碘泡虫不同寄生部位和不同地理分布的株系差异和遗传分化情况,实验基于其形态特征、组织向性、地理分布、18S rDNA序列相似度、遗传距离、系统发育,对米氏碘泡虫各株系进行比较分析。结果显示,米氏碘泡虫各株系孢子形态特征基本一致;米氏碘泡虫重庆株系1(鲇鳃腔膜寄生)、重庆株系2(鲇肠寄生)和江西株系(鲇肠寄生)间相似度为98.6%~99.9%,遗传距离为0.000~0.013;系统发育分析显示,米氏碘泡虫重庆株系2先与江西株系聚支,其形成的进化支再与重庆株系1形成姐妹群关系。研究表明,米氏碘泡虫并没有形成地理种群特有的单系,而是依据寄生部位形成肠寄生支系和鳃腔膜寄生支系。宿主种类相同的条件下,较之于地理隔离,寄生部位差异对于米氏碘泡虫种群分化的影响更大。 展开更多
关键词 米氏碘泡虫 18s rdna 株系比较
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工业大麻内生真菌HDM07挥发性成分分析
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作者 邢翔宇 丛添玥 +6 位作者 关昕 祁可香 李宛儒 张赫 尤梦瑶 吴桐 郑春英 《中国农学通报》 2024年第30期103-113,共11页
旨在开发利用工业大麻内生真菌HDM07挥发性成分,探索工业大麻内生真菌HDM07次生代谢产物生物合成途径。以工业大麻内生真菌HDM07为研究对象,采用GC-MS法和检索质谱数据库分析鉴定内生真菌HDM07发酵液和菌丝体中的挥发性成分,采用形态学... 旨在开发利用工业大麻内生真菌HDM07挥发性成分,探索工业大麻内生真菌HDM07次生代谢产物生物合成途径。以工业大麻内生真菌HDM07为研究对象,采用GC-MS法和检索质谱数据库分析鉴定内生真菌HDM07发酵液和菌丝体中的挥发性成分,采用形态学观察法和18S rDNA序列分析法鉴定菌种。结果表明,经GC-MS法和质谱数据库检索分析,从内生真菌HDM07发酵液中鉴定出11种挥发性成分,在内生真菌HDM07菌丝体中鉴定出14种挥发性成分,工业大麻叶中鉴定了12种成分,空白对照品溶液(PDB培养基)中鉴定了7种成分;经鉴定内生真菌HDM07为链格孢菌(Alternaria alternate)。上述结果表明,HDM07发酵液挥发性成分与菌丝体中挥发性成分两者的合成途径既有联系又有区别。内生真菌HDM07的发酵液及菌丝体中均含有与工业大麻相同或相似的挥发性成分,也含有其特有的挥发性成分,说明该菌株与宿主植物工业大麻在合成挥发性成分方面具有一定的相关性。 展开更多
关键词 工业大麻 工业大麻内生真菌HDM07 18s rdna序列分析 气相色谱质谱法 挥发性成分
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Chromosomal mapping of 5S and 18S-5.8S-25S rRNA genes in Saccharina japonica(Phaeophyceae)as visualized by dual-color fluorescence in situ hybridization
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作者 Yu LIU Pengfei LIU +1 位作者 Yanhui BI Zhigang ZHOU 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2021年第2期714-720,共7页
It has been reported that there was a linkage of 5S rRNA gene to 18S-5.8S-25S rRNA gene in a few of species in Ochrophyta.In regard to the usual two positions of linked 5S rDNA to the 3′end of 25S rDNA,two pairs of p... It has been reported that there was a linkage of 5S rRNA gene to 18S-5.8S-25S rRNA gene in a few of species in Ochrophyta.In regard to the usual two positions of linked 5S rDNA to the 3′end of 25S rDNA,two pairs of primers were designed for amplification to verify this linkage of two genes in a kelp cultivar of Saccharina japonica,one of species in Ochrophyta.This result supplemented the previous report that 5S rDNA was unlinked to 25S rDNA in this kelp.In order to simultaneously visualize this unlinkage of two genes,dual-color fluorescence in situ hybridization(FISH)technique was applied to the cytogenetics of S.japonica.Dual-color FISH images showed that two and four hybridization signals were present in the kelp gametophyte and sporophyte,respectively,metaphase nuclei hybridized simultaneously with the labeled probes of 18S rDNA and 5S rDNA.Both haploid and diploid karyotypes in decreasing length of chromosomes showed that 18S-5.8S-25S rDNA was localized at the interstitial region of Chromosome 23,whereas 5S rDNA resided at the sub-telomeric region of Chromosome 27.These karyotypes suggested that the kelp nuclear genome had only one locus of each rRNA gene,and their loci on different chromosomes indicated the physical unlinkage of 5S rDNA to 18S-5.8S-25S rDNA in this kelp.Therefore,dual-color FISH seems to be a powerful technique for the discrimination and pairing of chromosomes featured in both small size and nearly identical shape in S.japonica. 展开更多
关键词 5S rdna 18s-5.8S-25S rdna CHROMOSOME fluorescence in situ hybridization(FISH) KELP LINKAGE LOCUS
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不同DNA条形码在微口线虫属形态相近物种分类上的应用
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作者 周仁桂 郭玉清 +1 位作者 朱慧兰 施宜佳 《中国海洋大学学报(自然科学版)》 CAS CSCD 北大核心 2024年第8期52-62,共11页
为建立和完善海洋线虫相近物种的DNA条形码鉴定方法,本研究以深圳福田红树林湿地自由生活的海洋线虫优势属微口线虫属(Terschellingia)为研究对象,在形态分类鉴定基础上,将DNA条形码技术引入海洋线虫形态相似物种的鉴定,研究线粒体细胞... 为建立和完善海洋线虫相近物种的DNA条形码鉴定方法,本研究以深圳福田红树林湿地自由生活的海洋线虫优势属微口线虫属(Terschellingia)为研究对象,在形态分类鉴定基础上,将DNA条形码技术引入海洋线虫形态相似物种的鉴定,研究线粒体细胞色素氧化酶第一亚基(COⅠ)基因、18S核糖体RNA基因(18S rDNA)和28S rDNA三种基因序列片段的物种分类效果。研究共鉴定出微口线虫属4个不同的形态学种,获得其中3个种的DNA序列。18S rDNA及28S rDNA两种条形码所构建的发育树支持将本属划分成6个类群;Kimura 2 parameter(K2P)种内和种间阈值分别为18S rDNA的0%~2.5%和0.4%~13.7%,28S rDNA的0%和20.5%~84.6%。18S rDNA的MN18F-Nem_18S_R引物对所扩增的序列最适合作为微口线虫属种类鉴定的DNA条形码,并可用于区分物种复合体。28S rDNA序列虽然能成功扩增,但扩增效率相对较低;COⅠ基因片段无法在所有物种中成功扩增,推测现有引物可能不适合用于本属序列的提取。研究结果表明,DNA条形码可以用于自由生活海洋线虫形态相似物种的识别,但不同的单基因片段对相同物种的鉴定结果有明显差异。 展开更多
关键词 海洋线虫 微口线虫属 DNA条形码 18s rdna 28S rdna
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化皮刺参组织中盾纤毛虫的分离与鉴定
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作者 邓鸿圣 张荣伟 +1 位作者 陈毅 赵小然 《养殖与饲料》 2024年第8期57-61,共5页
[目的]对化皮刺参(Apostichopus japonicus)病例中的寄生虫进行分离鉴定,分析其致病因素,为刺参盾纤毛虫病诊断和防控提供参考依据。[方法]对辽宁某养殖场送检的化皮刺参表皮、体壁、肌肉、体腔液、呼吸树、肠道进行镜检,将观察到的纤... [目的]对化皮刺参(Apostichopus japonicus)病例中的寄生虫进行分离鉴定,分析其致病因素,为刺参盾纤毛虫病诊断和防控提供参考依据。[方法]对辽宁某养殖场送检的化皮刺参表皮、体壁、肌肉、体腔液、呼吸树、肠道进行镜检,将观察到的纤毛虫离体培养,并进行18S rDNA测序。[结果]病参各组织器官观察到纤毛虫H-1、H-2、H-3和H-4,H-4通过形态学判断为后口虫,成功离体培养出H-3与镜检未观察到的H-5。纤毛虫H-3与H-5的18S rDNA序列比对结果显示为海洋尾丝虫(Uronema marinum)。[结论]本病例中刺参各组织寄生多种纤毛虫,体腔液中寄生海洋尾丝虫,呼吸树中寄生后口虫和海洋尾丝虫。 展开更多
关键词 化皮刺参 盾纤毛虫 18s rdna 离体培养 后口虫 海洋尾丝虫
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Isolation and Identification of a Taxol-producing Endophytic Fungus Identified from Taxus media 被引量:8
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作者 李佟清 张志建 +5 位作者 张鹏 王春兰 刘博 刘婷婷 付春华 余龙江 《Agricultural Science & Technology》 CAS 2010年第5期38-40,68,共4页
[Objective] The aim was to isolate and identify a taxol-producing endophytic fungus from Taxus media. [Method] 32 strains of endophytic fungi were identified form the inner bark of T. media,and their fermentation prod... [Objective] The aim was to isolate and identify a taxol-producing endophytic fungus from Taxus media. [Method] 32 strains of endophytic fungi were identified form the inner bark of T. media,and their fermentation products were detected by high performance liquid chromatography (HPLC). [Result] Through the screening,a strain of taxol-producing endophytic fungi M57 was obtained,which could produce 45-50 μg/L of taxol,and M57 was defined as Rhizopus sp. through morphological observation and 18S rDNA sequence analysis. [Conclusion] The finding of Rhizopus sp. M57 provided a promising strain for producing taxol with taxol-producing fungi fermentation process. 展开更多
关键词 Taxus media Taxol Endophytic fungi HPLC 18s rdna
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基于环境DNA宏条形码技术的辽东湾典型围海养殖池塘内水母多样性研究 被引量:1
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作者 李玉龙 鲍相渤 +5 位作者 李轶平 周遵春 付杰 高祥刚 陈百灵 李云峰 《生态学报》 CAS CSCD 北大核心 2022年第13期5303-5313,共11页
研究使用环境DNA宏条形码技术(eDNA metabarcoding)检测辽东湾东北部河口区围海养殖池塘水母种类多样性,探索适用于水母种类物种鉴定和监测的新方法。利用环境DNA宏条形码技术,分别基于18S rDNA和COI宏条形码检测了辽东湾东北部河口区... 研究使用环境DNA宏条形码技术(eDNA metabarcoding)检测辽东湾东北部河口区围海养殖池塘水母种类多样性,探索适用于水母种类物种鉴定和监测的新方法。利用环境DNA宏条形码技术,分别基于18S rDNA和COI宏条形码检测了辽东湾东北部河口区围海养殖池塘水母种类多样性,通过水样采集、过滤、eDNA提取、遗传标记扩增、测序与生物信息分析的环境DNA宏条形码标准化分析流程,从围海养殖池塘7个采样点中获得可检测的采样点数据。结果显示,基于18S rDNA宏条形码检测出8种水母种类,其中钵水母纲大型水母2种、水螅水母总纲小型水母6种;基于COI宏条形码技术共检测出19种水母种类,其中钵水母纲大型水母5种、水螅水母总纲小型水母14种;两种DNA条形码标记都显示养殖种类海蜇(Rhopilema esculentum)为优势种。研究结果表明,环境DNA宏条形码技术作为一种新兴的生物多样性监测手段可用于快速检测水母种类多样性,在水母类物种鉴定、监测及早期预警中有较大的应用潜能。 展开更多
关键词 水母 环境DNA宏条形码 18s rdna 细胞色素C氧化酶亚基I(COI) 物种检测 早期监测与预警
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