A Global Ocean Biogeochemistry General Circulation Model and its Simulations

An ocean biogeochemistry model was developed and incorporated into a global ocean general circulation model （LICOM） to form an ocean biogeochemistry general circulation model （OBGCM）. The model was used to study the natural carbon cycle and the uptake and storage of anthropogenic CO2 in the ocean. A global export production of 12.5 Pg C yr-1 was obtained. The model estimated that in the pre-industrial era the global equatorial region within ~15~ of the equator released 0.97 Pg C yr-1 to the atmosphere, which was balanced by the gain of CO2 in other regions. The post-industrial air sea CO2 flux indicated the oceanic uptake of CO2 emitted by human activities. An increase of 20-50 ~mol kg-1 for surface dissolved inorganic carbon （DIC） concentrations in the 1990s relative to pre-industrial times was obtained in the simulation, which was consistent with data-based estimates. The model generated a total anthropogenic carbon inventory of 105 Pg C as of 1994, which was within the range of estimates by other researchers. Various transports of both natural and anthropogenic DIC as well as labile dissolved organic carbon （LDOC） were estimated from the simulation. It was realized that the Southern Ocean and the high-latitude region of the North Pacific are important export regions where accumulative air-sea CO2 fluxes are larger than the DIC inventory, whereas the subtropical regions are acceptance regions. The interhemispheric transport of total natural carbon （DIC＋LDOC） was found to be northward （0.11 Pg C yr-1）, which was just balanced by the gain of carbon from the atmosphere in the Southern Hemisphere.

Biogeochemistry of Nutrient Elements in the Changjiang (Yangtze River) Estuary

Based on the biogeochemical studies on nutrient elements in the Changjiang estuary, the main results and recent progresses are reviewed in this paper, such as the nutrient fluxes into the sea, the mixing behaviors, the distribution characteristics and transportation as well as the biogeochemical behaviors of nutrients in the plume frontal region. The exploring directions and research emphases in the future are proposed.

Advances in Chinese and international biogeochemistry research in the western Arctic Ocean: a review

Over the past decades, the Arctic Ocean has experienced rapid warming under climate change, which has dramatically altered its physical and biogeochemical properties. Reduction in the sea-ice cover is one of the most important driving forces of biogeochemical changes in the Arctic Ocean. Between 1999 and 2016, seven Chinese National Arctic Research Expeditions have taken place in the Bering and Chukchi seas, allowing assessment of the biogeochemical response of the western Arctic Ocean to global warming. Herein, we summarize advances in Chinese and international marine biogeochemistry research in the western Arctic Ocean, reviewing results from the Chinese expeditions and highlighting future trends of biogeochemistry in the Pacific Arctic region. The findings reported in this paper contribute towards a better understanding of water masses, greenhouse gases, nutrients, ocean acidification, and organic carbon export and burial processes in this region.

《Studies of the Biogeochemistry of Typical Estuaries and Bays in China》即将出版

由中国科学院海洋研究所沈志良研究员主编的《Studies of the Biogeochemistry of Typical Estuaries and Bays in China》将由Springer出版社出版。这是一部专门论述中国典型河口、海湾生物地球化学研究的书籍,以长江口和胶州湾为主要研究区域,研究内容包括营养盐、悬浮颗粒物、浮游植物、重金属等,涉及生物地球化学、生态学、环境科学、海洋化学、海洋生物学等多个学科。

Spatial patterns of phytoplankton communities in an International Seabed Authority licensed area(COMRA,Clarion-Clipperton Zone)in relation to upper ocean biogeochemistry

The Clarion-Clipperton Zone(CCZ)hosts one of the largest known oceanic nodule fields worldwide and is regulated by the International Seabed Authority.A baseline assessment of diversity and distribution patterns is essential for reliable predictions of disturbed ecosystem response scenarios for sustained commercial activities in the future.In the present study,the spatial patterns and diversity of phytoplankton communities were analyzed along with upper ocean biogeochemistry,in the licensed China Ocean Mineral Resources R&D Association(COMRA)contract area and the surrounding western CCZ between August 21 and October 8,2017.Results indicated this was a typical low-nutrient low-chlorophyll a(Chl a)environment,characterized by low levels of phytoplankton abundance and diversity.In total 112 species belonging to 4 phyla were recorded(>10μm),with species counts including 82 diatoms,27 dinoflagellates,1 cyanobacteria and 2 chrysophyte.Dominant taxa in successive order of descending abundance and occurrence included Nizschia marina,Cyclotella stylorum,Dactyliosolen mediterraneus,Rhizosolenia setigera,Pseudo-nitzschia delicatissima,Thalassiothrix frauenfeldii,Synedra sp.,Chaetoceros simplex and Pseudo-nitzschia circumpora.The depth-averaged abundance and Chl a concentrations were(265±233)cells/L and(0.27±0.30)μg/L,respectively.Diatoms accounted for 90.94%of the community with(241±223)cells/L,while dinoflagellates accounted for 5.67%and(15±13)cells/L.The distribution pattern exhibited the same trend as abundance,Chl a and species richness,showing subsurface maximum levels at around 100 m,with stations near 10°N having higher levels than in the north.Cluster analysis was performed in two assemblages,relating to geographic locations to the south and north of 12°N.The subsurface maximum of abundance,Chl a,species richness,dissolved oxygen and nitrite were generally corresponding to the presence of high salinity North Pacific Central Water at depths of 50-120 m.Higher availability of nitrate,phosphate and silicic acid in the subsurface may account for the shift in phytoplankton distribution,as shown by redundancy correspondence and spearman correlation analysis.Diel variation in an anchor station demonstrated prominent species succession without significant differences in oceanographic variables,among which diatoms succession resulted from the light limitation,while dinoflagellate diel variation mainly related to lateral transport of water masses.The observed patchiness in spatial phytoplankton distributional patterns was attributed to upper ocean environmental gradients in the CCZ.The baseline generated in this study could be analyzed using current conservation strategy programs associated with deep-sea mining.

Biogeochemistry of Plane Trees as a Tool to Detect Atmospheric Pollution

The plane tree, which is a valuable tool to detect atmospheric pollution, is one of the most common trees in European cities. Soil and leaf samplings were carried out in Barcelona and its environs (NE Spain) to establish the soil-plant relationship. Dry and ashed leaves and soils were analyzed by Instrumental Neutron Activation Analysis and Inductively Coupled Plasma-Optical Emission Spectroscopy (ICP/OES) at the ACTLABS laboratories in Ontario, Canada. Given that diesel is the main fuel used in vehicles in Europe, we sought to establish the role of diesel in atmospheric pollution. Diesel samples were obtained from service stations and analyzed after preconcentration using ICP/MS at the geochemistry laboratories of the University of Barcelona. The average content of diesel oil shows high values of Pb, Cu, Cr, Ag, Cd and Mn. High values of Pb, Cu, Au, Hg and Sb in leaves and soils were detected downtown and along main roads outside the city, whereas low levels of these elements were observed in rural areas.

Biogeochemistry of Lake Baikal Stony Littoral

The problem of biogenic income from rocks into a water ecosystem and of their use by hydrobionts is considered by the example of Lake Baikal biogeocenoses. A complex interreaction of stony material and Baikal water occurs on the stony littoral of Lake Baikal with an active participation of benthic and planktonic hydrobionts. Biogeochemical processes enable income of biophile elements providing productivity of stony littoral and hydrobionts biodiversity. A particular role in the littoral zone belongs to symbiotic organisms: lichens and sponges. They extract from the tocks a wide spectrum of macro- and micro- elements including phosphorus, fixe nitrogen and consume carbon. Biodiversity and bioproductivity of stony littoral depend on the diversity of petrographic composition of the rocks and on their geochemical peculiarities. Increase of anthropogenic impact onto the stony littoral manifested by income of biogenic elements and alien microbial cenosis flow results in degradation of primary aquatic biogeocenoses.

A biogeochemistry approach on the bivalves: REE distribution of white clam in Off Hatsushima cold seepage

THE cold seepage has been revealed in Off Hatsushima located at western Sagami Bay, central Japan in1984 by the submersible Shinkai 2000, which is characterized in dense deep-sea biological communitiesdominated by the White Clam Calyptogena soyoae. The clam communities stretch for 7 km along the footof a steep escarpment off Izu Peninsula at water depths of 900-1200 m. The area is located near theconvergence from the northern tip of the Philippine Sea Plate, which is subducting beneath the Eurasianand North American plates. Although numerous studies have become active around this region since1986, most of previous works were focused on biology, geology and physics. The geochemical data areextremely limited. The source of the cold seep fluid is not well known. In order to understand the

JES Special issue in Mercury Biogeochemistry and Fate

The global and regional redistribution of mercury within the environment is of primary importance to both natural ecosystems and human health.The ratification of the Minamata Convention on Mercury by 91 parties represents a key step in protecting ecosystems and future societies from increasing mercury accumulation.

SEPARATION OF IRON AND MANGANESE IN THE EARLY DIAGENETIC PROCESSES AND ITS MECHANISM OF BIOGEOCHEMISTRY

Study shows that the reduction of iron (Fe^(3+)) and manganese (Mn^(4+)) in modern sedi-ments and the diffusive flux of the Mn^(2+) from the pore water into the overlying waterare mainly controlled by bacteria, and the distribution of the bacteria is believed to beaffected strongly by the sedimentary environment. It is the diffusive fluxes between Fe^(2+)and Mn^(2+) that lead to the separation of iron and manganese in the modern sediment at theChangjiang Mouth and near the shore. The level of the separation decreases with theincrease of the overlying water salinity and increases from the surface to the depth. Thismechanism has given a new explanation why manganese is concentrated in sediments onthe oceanic floor of ferromanganese-rich nodules.

Linking bacterial and archaeal community dynamics to related hydrological,geochemical and environmental characteristics between surface water and groundwater in a karstic estuary

Subterranean estuaries(STEs)are characterized by the mixing of terrestrial fresh groundwater and seawater in coastal aquifers.Although microorganisms are important components of coastal groundwater ecosystems and play critical roles in biogeochemical transformations in STEs,limited information is available about how their community dynamics interact with hydrological,geochemical and environmental characteristics in STEs.Here,we studied bacterial and archaeal diversities and distributions with 16S rRNA-based Illumina MiSeq sequencing technology between surface water and groundwater in a karstic STE.Principal-coordinate analysis found that the bacterial and archaeal communities in the areas where algal blooms occurred were significantly separated from those in other stations without algal bloom occurrence.Canonical correspondence analysis showed that nutrients and salinity can explain the patterns of bacterial and archaeal community dynamics.The results suggest that hydrological,geochemical and environmental characteristics between surface water and groundwater likely control the bacterial and archaeal diversities and distributions in STEs.Furthermore,we found that some key species can utilize terrestrial pollutants such as nitrate and ammonia in STEs,indicating that these species(e.g.,Nitrosopumilus maritimus,Limnohabitans parvus and Simplicispira limi)may be excellent candidates for in situ degradation/remediation of coastal groundwater contaminations concerned with the nitrate and ammonia.Overall,this study reveals the coupling relationship between the microbial communities and hydrochemical environments in STEs,and provides a perspective of in situ degradation/remediation for coastal groundwater quality management.

Spatial variation and soil nitrogen potential hotspots in a mixed land cover catchment on the Chinese Loess Plateau

Soil nitrogen(N) is critical to ecosystem services and environmental quality. Hotspots of soil N in areas with high soil moisture have been widely studied, however, their spatial distribution and their linkage with soil N variation have seldom been examined at a catchment scale in areas with low soil water content. We investigated the spatial variation of soil N and its hotspots in a mixed land cover catchment on the Chinese Loess Plateau and used multiple statistical methods to evaluate the effects of the critical environmental factors on soil N variation and potential hotspots. The results demonstrated that land cover, soil moisture, elevation, plan curvature and flow accumulation were the dominant factors affecting the spatial variation of soil nitrate(NN), while land cover and slope aspect were the most important factors impacting the spatial distribution of soil ammonium(AN) and total nitrogen(TN). In the studied catchment, the forestland, gully land and grassland were found to be the potential hotspots of soil NN, AN and TN accumulation, respectively. We concluded that land cover and slope aspect could be proxies to determine the potential hotspots of soil N at the catchment scale. Overall, land cover was the most important factor that resulted in the spatial variations of soil N. The findings may help us to better understand the environmental factors affecting soil N hotspots and their spatial variation at the catchment scale in terrestrial ecosystems.

Contrasting lipid biomarkers in mountain rivers in the Nepal Himalayas: Organic matter characteristics and contribution to the fluvial carbon pool

The Nepal Himalayas is the source of many glacial and spring-fed river systems crisscrossing the mountainous terrain.There is an increasing recognition of small mountain rivers(SMRs)to have a significant combined export of dissolved and particulate organic carbon to the global carbon flux.We analyzed fluvial sediments from two SMRs and compared the results with two large mountain rivers(LMRs)in Nepal.We investigated the organic matter(OM),its compositional variability,and seasonal export using a suite of lipid biomarkers,namely n-alkanes,n-alkanoic acids,n-alkanols,and sterols.The SMRs indicated a similarity in lipid distribution and were affected by a strong seasonal variability.The LMRs showed a distinct contrast in the distribution of lipids in suspended sediments.Bedload sediments in SMRs were derived from diverse sources with weak terrigenous dominance all-year-round compared to the suspended load.Functional lipids(n-alkanoic acids and n-alkanols)were the major constituents in SMR sediments,indicating better preservation.In contrast,n-alkane concentration dominated over other fractions in suspended sediments retrieved from LMRs.The biomarker trends differentiate SMRs from LMRs with lower transformed/degraded OM in SMRs.A common observation was the strong presence of even carbon compounds in short-chain n-alkanes in SMR bedload sediments and their predominance in suspended sediments in LMRs.Such an unusual trend is attributed to specific biomarker sources from the catchment and ongoing processes in fluvial systems.Topsoil colonized by fungal species under moist acidic conditions and autochthonous bacteria contributes to the organic matter pool in shallow SMRs.In LMRs,the contribution from thermally mature sedimentary hydrocarbons and the diagenetic reduction of nalkanoic acids to n-alkanes are additional contributors to the allochthonous carbon pool.The differences in lipid concentrations,their distribution,seasonality,and the size of rivers suggest differential preservation/degradation of the organic matter pool and their importance in contributing to the carbon budget.

Molecular diversity and biogeography of benthic microeukaryotes in temperate seagrass(Zostera japonica)systems of northern China

The productivity and health of seagrass depend on the combined inputs of nutrients from the water and sediments in which they grow and the microbiota with which they live intimately.However,little is known about the composition and diversity pattern of single-celled benthic eukaryotes in seagrass meadows.Here,we investigated how the structure and diversity of the benthic microeukaryotic community vary with respect to season,location,and seagrass colonization,by applying 18S rRNA gene amplicon sequencing for 96 surface sediment samples that were collected from three different seagrass habitats through four seasons.We found that benthic microeukaryotic communities associated with seagrass Zostera japonica exhibited remarkable spatial and seasonal variations,as well as differences between vegetated and unvegetated sediments.Diatoms and dinoflagellates predominated in the benthic microeukaryotic communities,but they were inversely correlated and displaced each other as the dominant microbial group in different seasons or habitats.Mucoromycota was more prevalent in vegetated sediments,whereas Lobulomycetales and Chytridiales had higher proportions in unvegetated sites.Total organic carbon and total organic nitrogen were the most important environmental factors in driving the microeukaryotic assemblages and diversity.Our study expands the available knowledge on the biogeographic distribution patterns and niche preferences for benthic microeukaryotes in seagrass systems.

Geochemical characteristics and growth suitability assessment of Scutellaria baicalensis Georgi in the Earth's critical zone of North China

Geochemical differentiation of soils has a series of consequences on plant and places pressure on the ecological environment.The quantitative evaluation of element migration in the Earth’s critical zone is a challenging task.In this study,two demonstration study areas of Scutellaria baicalensis Georgi were selected,and multiple chemical weathering indexes,chemical loss fraction,mass migration coefficients and biological enrichment coefficient method were used to assess the ecological and geochemical suitability.The results show that for the element of Fe,Zn,Se,Cu,Co,Ni,Mo and Ge,the degree of weathering and soil maturation,were greater in the rhyolitic tuff area than in the Plagioclase gneiss area.In both research sites,the heavy metal level of samples in Scutellaria baicalensis Georgi did not exceed the standard limits.The plagioclase gneiss region’s surface soil environment was more alkaline,and the content of soil organic matter was lower,resulting in a higher bioenrichment intensity of Ge,Co,Cu,and Se elements in Scutellaria baicalensis Georgi than in the rhyolite-tuff area.The elements of Cd,Nb,Mo,Pb and As are considerably enriched in the soil of the plagioclase gneiss area but lost by leaching in the soil of the rhyolite tuff area,which is connected to the interplay of elemental abundance and human impact in the parent materials.This study provides a good example of how to assess growth suitability of Chinese medicinal materials in the Earth’s critical zone.

The decomposition rate of the organic carbon content of suspended particulate matter in the tropical seagrass meadows

In terms of downward transport,suspended particulate matter(SPM)from marine or terrigenous sources is an essential contributor to the carbon cycle.Within mesoscale environments such as seagrass ecosystems,SPM flux is an essential part of the total carbon budget that is transported within the ecosystem.By assessing the total SPM transport from water column to sediment,potential carbon burial can be estimated.However,SPM may decompose or reforming aggregate during transport,so estimating the vertical flux without knowing the decomposition rate will lead to over-or underestimation of the total carbon budget.Here this paper presents the potential decomposition rate of the SPM in seagrass ecosystems in an attempt to elucidate the carbon dynamics of SPM.SPM was collected from the seagrass ecosystems located at Sikka and Sorong in Indonesia.In situ experiments using SPM traps were conducted to assess the vertical downward flux and decomposition rate of SPM.The isotopic profile of SPM was measured together with organic carbon and total nitrogen content.The results show that SPM was transported to the bottom of the seagrass ecosystem at a rate of up to(129.45±53.79)mg/(m^(2)·h)(according to carbon).Considering the whole period of inundation of seagrass meadows,SPM downward flux reached a maximum of 3096 mg/(m^(2)·d)(according to carbon).The decomposition rate was estimated at from 5.9μg/(mg·d)(according to carbon)to 26.6μg/(mg·d)(according to carbon).Considering the total downward flux of SPM in the study site,the maximum decomposed SPM was estimated 39.9 mg/(m^(2)·d)(according to carbon)and 82.6 mg/(m^(2)·d)(according to carbon)for study site at Sorong and Sikka,respectively.The decomposed SPM can be 0.6%–2.7%of the total SPM flux,indicating that it is a small proportion of the total flux.The seagrass ecosystems of Sorong and Sikka SPM show an autochthonous tendency with the primary composition of marine-end materials.

Effects of solar radiation modification on the ocean carbon cycle:An earth system modeling study

Solar radiation modification(SRM,also termed as geoengineering)has been proposed as a potential option to counteract anthropogenic warming.The underlying idea of SRM is to reduce the amount of sunlight reaching the atmosphere and surface,thus offsetting some amount of global warming.Here,the authors use an Earth system model to investigate the impact of SRM on the global carbon cycle and ocean biogeochemistry.The authors simulate the temporal evolution of global climate and the carbon cycle from the pre-industrial period to the end of this century under three scenarios:the RCP4.5 CO_(2) emission pathway,the RCP8.5 CO_(2) emission pathway,and the RCP8.5 CO_(2) emission pathway with the implementation of SRM to maintain the global mean surface temperature at the level of RCP4.5.The simulations show that SRM,by altering global climate,also affects the global carbon cycle.Compared to the RCP8.5 simulation without SRM,by the year 2100,SRM reduces atmospheric CO_(2) by 65 ppm mainly as a result of increased CO_(2) uptake by the terrestrial biosphere.However,SRM-induced change in atmospheric CO_(2) and climate has a small effect in mitigating ocean acidification.By the year 2100,relative to RCP8.5,SRM causes a decrease in surface ocean hydrogen ion concentration([H^(+)])by 6% and attenuates the seasonal amplitude of[H^(+)]by about 10%.The simulations also show that SRM has a small effect on globally integrated ocean net primary productivity relative to the high-CO_(2) simulation without SRM.This study contributes to a comprehensive assessment of the effects of SRM on both the physical climate and the global carbon cycle.

The chemical distribution characteristics of variant form phosphorus in the seawater of the South China Sea

According to two cruises investigation information in summer and winter during 1998 and 1999, the phosphorous concentration distribution and changes of summer and winter were discussed primarily in the South China Sea. The results show that the phosphate concentration of surface seawater in summer is distinctly lower than that in winter, averaging 0.04 mumol/dm(3) in summer and 0.35 mumol/ dm(3) in winter. The organic phosphorous concentration of surface seawater in summer is higher than that in winter, averaging 0.12 mumol/dm(3) in summer and 0. 04 mumol/dm(3) in winter respectively. The seasonal changes of total phosphorus are similar to phosphate, averaging 0.22 mumol/dm(3) in summer and 0.61 mumol/dm(3) in winter respectively. In vertical direction, phosphate, TDP and TP content are the lowest in upper 50 m water column, and increase in linearity rapidly with water depth, increasing slowly under 500 m, reach to maximum about 1000 m, then decrease slightly with water depth increasing. The vertical distribution is typical in summer, and there is small dispersed for phosphorus concentration for the same depth of different stations. However, in winter there is a large disperse for phosphate, TDP and TP, specifically for phosphate at 200 m at which the concentration is maximum. This result indicates that there are large differences in hydrology and biology conditions that affect largely the chemical environment of the South China Sea. The organic phosphorus is the predominant in surface seawater of the South China Sea, but the inorganic phosphorus is the predominant in layers below depth of 150 m. The organic phosphorus concentration in deep water usually decreases with water depth increasing. The organic phosphorus in summer is remarkably more than that in winter because of the strong biology activities in summer.

Taxonomical and Biogeochemical Investigation of Elements in Holocene Mollusk Shells in the South and Southwestern Marmara Basin,Turkey

Concentrations of some heavy metals and trace elements such as Cr, Ga, Ni, Zn, Mo, Cu, Pb, Yb, Y, Nb, Ti, Sr, Ba, Mn, Sc, Co, V, Zr, Fe, Al, W, Se, Bi, Sb, As, Cd in recent mollusk shells and factors affecting their distribution and deposits collected from various depths in the southern and southwestern parts of the Marmara Sea are investigated. The distribution of the elements in the shells is categorized into four groups. Of these, concentrations of 12 elements （As, Bi, Cd, Co, Ga, Mo, Nb, Sb, Se, Sc, W and Yb） are below zero [（0.053-0.79）×10^-6]; concentrations of seven elements （Cr, Ni, Pb, V, Y, Zr and Cu） are （1.0-6.0）×10^-6; concentrations of four elements （Ti, Mn, Ba and Zn） are 10- 20×10^-6; and concentrations of five elements （Si, Al, Fe, Mg and Sr） are （47.44-268.11）×10^-6. The taxonomic characteristics of the 29 elements were studied separately in mollusk shells such as Chamalea gallina （Linn6）, Pitar rudis （Poli）, Nassarius reticulatus （Linn6）, Venerupis senescens （Coocconi）, Mytilus galloprovincialis （Lamarck）, Mytilaster lineatus （Gemelin in Linne） and Chlamys glabra. It was found that, in mollusk taxonomy, the elements have unique values. In other words, element concentrations in various mollusk shells depend mainly on the taxonomic characteristics of mollusks. In various bionomic environments different element distributions of the same species are attributed to the different geochemical characters of the each environment. Data obtained in this study indicate that the organisms are the most active and deterministic factors of the environment.

BIOCHEMICAL STUDIES ON “SUB-MICROMETER PARTICLES" AT DAYA BAY I. STUDY ON CONCENTRATION, DISTRIBUTION AND CORRELATION OF TRACE METALS IN DIFFERENT SIZE FRACTIONS

This paper discusses the measured concentrations of trace metals in different size fractions at Daya Bay, and describes the features of distribution and variation of lead, copper and cadmium there. On average,16% of Pb,10% of Cu and 8% of Cd which previously would have been considered in the dissolved phase are actually associated with colloidal material. Thus, past studies overestimate the dissolved trace metal concentration. The correlation between the colloidal fraction and the so called dissolved fraction suggests the significant role of colloidal material in the biogeochemistry of trace metals.