Design of control strategies for gene regulatory networks is a challenging and important topic in systems biology. In this paper, the problem of finding both a minimum set of control nodes (control inputs) and a contr...Design of control strategies for gene regulatory networks is a challenging and important topic in systems biology. In this paper, the problem of finding both a minimum set of control nodes (control inputs) and a controller is studied. A control node corresponds to a gene that expression can be controlled. Here, a Boolean network is used as a model of gene regulatory networks, and control specifications on attractors, which represent cell types or states of cells, are imposed. It is important to design a gene regulatory network that has desired attractors and has no undesired attractors. Using a matrix-based representation of BNs, this problem can be rewritten as an integer linear programming problem. Finally, the proposed method is demonstrated by a numerical example on a WNT5A network, which is related to melanoma.展开更多
In this paper, verification of real-time pricing systems of electricity is considered using a probabilistic Boolean network (PBN). In real-time pricing systems, electricity conservation is achieved by manipulating the...In this paper, verification of real-time pricing systems of electricity is considered using a probabilistic Boolean network (PBN). In real-time pricing systems, electricity conservation is achieved by manipulating the electricity price at each time. A PBN is widely used as a model of complex systems, and is appropriate as a model of real-time pricing systems. Using the PBN-based model, real-time pricing systems can be quantitatively analyzed. In this paper, we propose a verification method of real-time pricing systems using the PBN-based model and the probabilistic model checker PRISM. First, the PBN-based model is derived. Next, the reachability problem, which is one of the typical verification problems, is formulated, and a solution method is derived. Finally, the effectiveness of the proposed method is presented by a numerical example.展开更多
Background Abiotic factors exert different impacts on the abundance of individual tree species in the forest but little has been known about the impact of abiotic factors on the individual plant,particularly,in a trop...Background Abiotic factors exert different impacts on the abundance of individual tree species in the forest but little has been known about the impact of abiotic factors on the individual plant,particularly,in a tropical forest.This study identified the impact of abiotic factors on the abundances of Podocarpus falcatus,Croton macrostachyus,Celtis africana,Syzygium guineense,Olea capensis,Diospyros abyssinica,Feliucium decipenses,and Coffea arabica.A systematic sample design was used in the Harana forest,where 1122 plots were established to collect the abundance of species.Random forest(RF),artificial neural network(ANN),and generalized linear model(GLM)models were used to examine the impacts of topographic,climatic,and edaphic factors on the log abundances of woody species.The RF model was used to predict the spatial distribution maps of the log abundances of each species.Results The RF model achieved a better prediction accuracy with R^(2)=71%and a mean squared error(MSE)of 0.28 for Feliucium decipenses.The RF model differentiated elevation,temperature,precipitation,clay,and potassium were the top variables that influenced the abundance of species.The ANN model showed that elevation induced a nega-tive impact on the log abundances of all woody species.The GLM model reaffirmed the negative impact of elevation on all woody species except the log abundances of Syzygium guineense and Olea capensis.The ANN model indicated that soil organic matter(SOM)could positively affect the log abundances of all woody species.The GLM showed a similar positive impact of SOM,except for a negative impact on the log abundance of Celtis africana at p<0.05.The spatial distributions of the log abundances of Coffee arabica,Filicium decipenses,and Celtis africana were confined to the eastern parts,while the log abundance of Olea capensis was limited to the western parts.Conclusions The impacts of abiotic factors on the abundance of woody species may vary with species.This ecological understanding could guide the restoration activity of individual species.The prediction maps in this study provide spatially explicit information which can enhance the successful implementation of species conservation.展开更多
Social network is the mainstream medium of current information dissemination,and it is particularly important to accurately predict its propagation law.In this paper,we introduce a social network propagation model int...Social network is the mainstream medium of current information dissemination,and it is particularly important to accurately predict its propagation law.In this paper,we introduce a social network propagation model integrating multiple linear regression and infectious disease model.Firstly,we proposed the features that affect social network communication from three dimensions.Then,we predicted the node influence via multiple linear regression.Lastly,we used the node influence as the state transition of the infectious disease model to predict the trend of information dissemination in social networks.The experimental results on a real social network dataset showed that the prediction results of the model are consistent with the actual information dissemination trends.展开更多
The virtuality and openness of online social platforms make networks a hotbed for the rapid propagation of various rumors.In order to block the outbreak of rumor,one of the most effective containment measures is sprea...The virtuality and openness of online social platforms make networks a hotbed for the rapid propagation of various rumors.In order to block the outbreak of rumor,one of the most effective containment measures is spreading positive information to counterbalance the diffusion of rumor.The spreading mechanism of rumors and effective suppression strategies are significant and challenging research issues.Firstly,in order to simulate the dissemination of multiple types of information,we propose a competitive linear threshold model with state transition(CLTST)to describe the spreading process of rumor and anti-rumor in the same network.Subsequently,we put forward a community-based rumor blocking(CRB)algorithm based on influence maximization theory in social networks.Its crucial step is to identify a set of influential seeds that propagate anti-rumor information to other nodes,which includes community detection,selection of candidate anti-rumor seeds and generation of anti-rumor seed set.Under the CLTST model,the CRB algorithm has been compared with six state-of-the-art algorithms on nine online social networks to verify the performance.Experimental results show that the proposed model can better reflect the process of rumor propagation,and review the propagation mechanism of rumor and anti-rumor in online social networks.Moreover,the proposed CRB algorithm has better performance in weakening the rumor dissemination ability,which can select anti-rumor seeds in networks more accurately and achieve better performance in influence spread,sensitivity analysis,seeds distribution and running time.展开更多
This paper investigates the stability of the equilibria of the piecewise-linear models of genetic regulatory networks on the intersection of the thresholds of all variables. It first studies circling trajectories and ...This paper investigates the stability of the equilibria of the piecewise-linear models of genetic regulatory networks on the intersection of the thresholds of all variables. It first studies circling trajectories and derives some stability conditions by quantitative analysis in the state transition graph. Then it proposes a common Lyapunov function for convergence analysis of the piecewise-linear models and gives a simple sign condition. All the obtained conditions are only related to the constant terms on the right-hand side of the differential equation after bringing the equilibrium to zero.展开更多
To facilitate stability analysis of discrete-time bidirectional associative memory (BAM) neural networks, they were converted into novel neural network models, termed standard neural network models (SNNMs), which inte...To facilitate stability analysis of discrete-time bidirectional associative memory (BAM) neural networks, they were converted into novel neural network models, termed standard neural network models (SNNMs), which interconnect linear dynamic systems and bounded static nonlinear operators. By combining a number of different Lyapunov functionals with S-procedure, some useful criteria of global asymptotic stability and global exponential stability of the equilibrium points of SNNMs were derived. These stability conditions were formulated as linear matrix inequalities (LMIs). So global stability of the discrete-time BAM neural networks could be analyzed by using the stability results of the SNNMs. Compared to the existing stability analysis methods, the proposed approach is easy to implement, less conservative, and is applicable to other recurrent neural networks.展开更多
A neural-network-based robust control design is suggested for control of a class of nonlinear systems. The design ap- proach employs a neural network, whose activation functions satisfy the sector conditions, to appro...A neural-network-based robust control design is suggested for control of a class of nonlinear systems. The design ap- proach employs a neural network, whose activation functions satisfy the sector conditions, to approximate the nonlinear system. To improve the approximation performance and to account for the parameter perturbations during operation, a novel neural network model termed standard neural network model (SNNM) is proposed. If the uncertainty is bounded, the SNNM is called an interval SNNM (ISNNM). A state-feedback control law is designed for the nonlinear system modelled by an ISNNM such that the closed-loop system is globally, robustly, and asymptotically stable. The control design equations are shown to be a set of linear matrix inequalities (LMIs) that can be easily solved by available convex optimization algorithms. An example is given to illustrate the control design procedure, and the performance of the proposed approach is compared with that of a related method reported in literature.展开更多
We consider optimal control problems for the flow of gas in a pipe network. The equations of motions are taken to be represented by a semi-linear model derived from the fully nonlinear isothermal Euler gas equations. ...We consider optimal control problems for the flow of gas in a pipe network. The equations of motions are taken to be represented by a semi-linear model derived from the fully nonlinear isothermal Euler gas equations. We formulate an optimal control problem on a given network and introduce a time discretization thereof. We then study the well-posedness of the corresponding time-discrete optimal control problem. In order to further reduce the complexity, we consider an instantaneous control strategy. The main part of the paper is concerned with a non-overlapping domain decomposition of the semi-linear elliptic optimal control problem on the graph into local problems on a small part of the network, ultimately on a single edge.展开更多
文摘Design of control strategies for gene regulatory networks is a challenging and important topic in systems biology. In this paper, the problem of finding both a minimum set of control nodes (control inputs) and a controller is studied. A control node corresponds to a gene that expression can be controlled. Here, a Boolean network is used as a model of gene regulatory networks, and control specifications on attractors, which represent cell types or states of cells, are imposed. It is important to design a gene regulatory network that has desired attractors and has no undesired attractors. Using a matrix-based representation of BNs, this problem can be rewritten as an integer linear programming problem. Finally, the proposed method is demonstrated by a numerical example on a WNT5A network, which is related to melanoma.
文摘In this paper, verification of real-time pricing systems of electricity is considered using a probabilistic Boolean network (PBN). In real-time pricing systems, electricity conservation is achieved by manipulating the electricity price at each time. A PBN is widely used as a model of complex systems, and is appropriate as a model of real-time pricing systems. Using the PBN-based model, real-time pricing systems can be quantitatively analyzed. In this paper, we propose a verification method of real-time pricing systems using the PBN-based model and the probabilistic model checker PRISM. First, the PBN-based model is derived. Next, the reachability problem, which is one of the typical verification problems, is formulated, and a solution method is derived. Finally, the effectiveness of the proposed method is presented by a numerical example.
文摘Background Abiotic factors exert different impacts on the abundance of individual tree species in the forest but little has been known about the impact of abiotic factors on the individual plant,particularly,in a tropical forest.This study identified the impact of abiotic factors on the abundances of Podocarpus falcatus,Croton macrostachyus,Celtis africana,Syzygium guineense,Olea capensis,Diospyros abyssinica,Feliucium decipenses,and Coffea arabica.A systematic sample design was used in the Harana forest,where 1122 plots were established to collect the abundance of species.Random forest(RF),artificial neural network(ANN),and generalized linear model(GLM)models were used to examine the impacts of topographic,climatic,and edaphic factors on the log abundances of woody species.The RF model was used to predict the spatial distribution maps of the log abundances of each species.Results The RF model achieved a better prediction accuracy with R^(2)=71%and a mean squared error(MSE)of 0.28 for Feliucium decipenses.The RF model differentiated elevation,temperature,precipitation,clay,and potassium were the top variables that influenced the abundance of species.The ANN model showed that elevation induced a nega-tive impact on the log abundances of all woody species.The GLM model reaffirmed the negative impact of elevation on all woody species except the log abundances of Syzygium guineense and Olea capensis.The ANN model indicated that soil organic matter(SOM)could positively affect the log abundances of all woody species.The GLM showed a similar positive impact of SOM,except for a negative impact on the log abundance of Celtis africana at p<0.05.The spatial distributions of the log abundances of Coffee arabica,Filicium decipenses,and Celtis africana were confined to the eastern parts,while the log abundance of Olea capensis was limited to the western parts.Conclusions The impacts of abiotic factors on the abundance of woody species may vary with species.This ecological understanding could guide the restoration activity of individual species.The prediction maps in this study provide spatially explicit information which can enhance the successful implementation of species conservation.
基金This work was supported by the 2021 Project of the“14th Five-Year Plan”of Shaanxi Education Science“Research on the Application of Educational Data Mining in Applied Undergraduate Teaching-Taking the Course of‘Computer Application Technology’as an Example”(SGH21Y0403)the Teaching Reform and Research Projects for Practical Teaching in 2022“Research on Practical Teaching of Applied Undergraduate Projects Based on‘Combination of Courses and Certificates”-Taking Computer Application Technology Courses as an Example”(SJJG02012)the 11th batch of Teaching Reform Research Project of Xi’an Jiaotong University City College“Project-Driven Cultivation and Research on Information Literacy of Applied Undergraduate Students in the Information Times-Taking Computer Application Technology Course Teaching as an Example”(111001).
文摘Social network is the mainstream medium of current information dissemination,and it is particularly important to accurately predict its propagation law.In this paper,we introduce a social network propagation model integrating multiple linear regression and infectious disease model.Firstly,we proposed the features that affect social network communication from three dimensions.Then,we predicted the node influence via multiple linear regression.Lastly,we used the node influence as the state transition of the infectious disease model to predict the trend of information dissemination in social networks.The experimental results on a real social network dataset showed that the prediction results of the model are consistent with the actual information dissemination trends.
基金supported by the National Social Science Fund of China (Grant No.23BGL270)。
文摘The virtuality and openness of online social platforms make networks a hotbed for the rapid propagation of various rumors.In order to block the outbreak of rumor,one of the most effective containment measures is spreading positive information to counterbalance the diffusion of rumor.The spreading mechanism of rumors and effective suppression strategies are significant and challenging research issues.Firstly,in order to simulate the dissemination of multiple types of information,we propose a competitive linear threshold model with state transition(CLTST)to describe the spreading process of rumor and anti-rumor in the same network.Subsequently,we put forward a community-based rumor blocking(CRB)algorithm based on influence maximization theory in social networks.Its crucial step is to identify a set of influential seeds that propagate anti-rumor information to other nodes,which includes community detection,selection of candidate anti-rumor seeds and generation of anti-rumor seed set.Under the CLTST model,the CRB algorithm has been compared with six state-of-the-art algorithms on nine online social networks to verify the performance.Experimental results show that the proposed model can better reflect the process of rumor propagation,and review the propagation mechanism of rumor and anti-rumor in online social networks.Moreover,the proposed CRB algorithm has better performance in weakening the rumor dissemination ability,which can select anti-rumor seeds in networks more accurately and achieve better performance in influence spread,sensitivity analysis,seeds distribution and running time.
基金supported by the National Natural Science Foundation of China (Grant No. 60672029)
文摘This paper investigates the stability of the equilibria of the piecewise-linear models of genetic regulatory networks on the intersection of the thresholds of all variables. It first studies circling trajectories and derives some stability conditions by quantitative analysis in the state transition graph. Then it proposes a common Lyapunov function for convergence analysis of the piecewise-linear models and gives a simple sign condition. All the obtained conditions are only related to the constant terms on the right-hand side of the differential equation after bringing the equilibrium to zero.
基金Project (No. 60074008) supported by the National Natural Science Foundation of China
文摘To facilitate stability analysis of discrete-time bidirectional associative memory (BAM) neural networks, they were converted into novel neural network models, termed standard neural network models (SNNMs), which interconnect linear dynamic systems and bounded static nonlinear operators. By combining a number of different Lyapunov functionals with S-procedure, some useful criteria of global asymptotic stability and global exponential stability of the equilibrium points of SNNMs were derived. These stability conditions were formulated as linear matrix inequalities (LMIs). So global stability of the discrete-time BAM neural networks could be analyzed by using the stability results of the SNNMs. Compared to the existing stability analysis methods, the proposed approach is easy to implement, less conservative, and is applicable to other recurrent neural networks.
基金Project supported by the National Natural Science Foundation of China (No. 60504024), and Zhejiang Provincial Education Depart-ment (No. 20050905), China
文摘A neural-network-based robust control design is suggested for control of a class of nonlinear systems. The design ap- proach employs a neural network, whose activation functions satisfy the sector conditions, to approximate the nonlinear system. To improve the approximation performance and to account for the parameter perturbations during operation, a novel neural network model termed standard neural network model (SNNM) is proposed. If the uncertainty is bounded, the SNNM is called an interval SNNM (ISNNM). A state-feedback control law is designed for the nonlinear system modelled by an ISNNM such that the closed-loop system is globally, robustly, and asymptotically stable. The control design equations are shown to be a set of linear matrix inequalities (LMIs) that can be easily solved by available convex optimization algorithms. An example is given to illustrate the control design procedure, and the performance of the proposed approach is compared with that of a related method reported in literature.
文摘We consider optimal control problems for the flow of gas in a pipe network. The equations of motions are taken to be represented by a semi-linear model derived from the fully nonlinear isothermal Euler gas equations. We formulate an optimal control problem on a given network and introduce a time discretization thereof. We then study the well-posedness of the corresponding time-discrete optimal control problem. In order to further reduce the complexity, we consider an instantaneous control strategy. The main part of the paper is concerned with a non-overlapping domain decomposition of the semi-linear elliptic optimal control problem on the graph into local problems on a small part of the network, ultimately on a single edge.