Large-scale farming of agriculture crops requires real-time detection of disease for field pest management. Hyperspectral remote sensing data generally have high spectral resolution, which could be very useful for det...Large-scale farming of agriculture crops requires real-time detection of disease for field pest management. Hyperspectral remote sensing data generally have high spectral resolution, which could be very useful for detecting disease stress in green vegetation at the leaf and canopy levels. In this study, hyperspectral reflectances of rice in the laboratory and field were measured to characterize the spectral regions and wavebands, which were the most sensitive to rice brown spot infected by Bipolaris oryzae (Helminthosporium oryzae Breda. de Hann). Leaf reflectance increased at the ranges of 450 to 500 nm and 630 to 680 nm with the increasing percentage of infected leaf surface, and decreased at the ranges of 520 to 580 nm, 760 to 790 nm, 1550 to 1750 nm, and 2080 to 2350 nm with the increasing percentage of infected leaf surface respectively. The sensitivity analysis and derivative technique were used to select the sensitive wavebands for the detection of rice brown spot infected by B. oryzae. Ratios of rice leaf reflectance were evaluated as indicators of brown spot. R669/R746 (the reflectance at 669 nm divided by the reflectance at 746 nm, the following ratios may be deduced by analogy), R702/R718, R692/R530, R692/R732, R535/R746, R521/R718, and R569/R718 increased significantly as the incidence of rice brown spot increased regardless of whether it's at the leaf or canopy level. R702/R718, R692/R530, R692/R732 were the best three ratios for estimating the disease severity of rice brown spot at the leaf and canopy levels. This result not only confirms the capability of hyperspectral remote sensing data in characterizing crop disease for precision pest management in the real world, but also testifies that the ratios of crop reflectance is a useful method to estimate crop disease severity.展开更多
[Objective] The paper was to understand the suitable meteorological indexes and key meteorological factors for infection and prevalence of tobacco brown spot. [ Method] Tobacco brown spot disease in five topical mount...[Objective] The paper was to understand the suitable meteorological indexes and key meteorological factors for infection and prevalence of tobacco brown spot. [ Method] Tobacco brown spot disease in five topical mountainous climatic areas of Guizhou Province was investigated, and the difference of biological characteristics of different strains was analyzed indoor. Different meteorological conditions (light, temperature and humidity) were simulated in artificial climate box by using the uniform design method, and the difference of infection ability of Alternaria alternate in different climate zones was analyzed in leaves in vitro by hanging drop method. [ Result] The infection rate of A. alternate in different climate zones of Guizhou Province showed certain difference. In low temperature and mid- die humidity (the humidity is 50% -60%, the temperature is 10 -20 ℃) conditions, the pathogen could infect tobacco leaves, various strains had certain difference, but the difference was small. [ Conclusion] The paper provided theoretical basis for prevalence prediction and control of tobacco brown spot.展开更多
The bacterial brown spot disease(BBS), caused primarily by Pseudomonas syringae pv. syringae van Hall(Pss), reduces plant vigor, yield and quality in maize. To reveal the nature of the defense mechanisms and ident...The bacterial brown spot disease(BBS), caused primarily by Pseudomonas syringae pv. syringae van Hall(Pss), reduces plant vigor, yield and quality in maize. To reveal the nature of the defense mechanisms and identify genes involved in the effective host resistance, the dynamic changes of defense transcriptome triggered by the infection of Pss were investigated and compared between two maize near-isogenic lines(NILs). We found that Pss infection resulted in a sophisticated transcriptional reprogramming of several biological processes and the resistant NIL employed much faster defense responses than the susceptible NIL. Numerous genes encoding essential components of plant basal resistance would be able to be activated in the susceptible NIL, such as PEN1, PEN2, PEN3, and EDR1, however, in a basic manner, such resistance might not be sufficient for suppressing Pss pathogenesis. In addition, the expressions of a large number of PTI-, ETI-, PR-, and WRKY-related genes were pronouncedly activated in the resistant NIL, suggesting that maize employ a multitude of defense pathways to defend Pss infection. Six R-gene homologs were identified to have significantly higher expression levels in the resistant NIL at early time point, indicating that a robust surveillance system(gene-to-gene model) might operate in maize during Pss attacks, and these homolog genes are likely to be potential candidate resistance genes involved in BBS disease resistance. Furthermore, a holistic group of novel pathogen-responsive genes were defined, providing the repertoire of candidate genes for further functional characterization and identification of their regulation patterns during pathogen infection.展开更多
Detecting plant health conditions plays a key role in farm pest management and crop protection. In this study, measurement of hyperspectral leaf reflectance in rice crop (Oryzasativa L.) was conducted on groups of hea...Detecting plant health conditions plays a key role in farm pest management and crop protection. In this study, measurement of hyperspectral leaf reflectance in rice crop (Oryzasativa L.) was conducted on groups of healthy and infected leaves by the fungus Bipolaris oryzae (Helminthosporium oryzae Breda. de Hann) through the wavelength range from 350 to 2 500 nm. The percentage of leaf surface lesions was estimated and defined as the disease severity. Statistical methods like multiple stepwise regression, principal component analysis and partial least-square regression were utilized to calculate and estimate the disease severity of rice brown spot at the leaf level. Our results revealed that multiple stepwise linear regressions could efficiently estimate disease severity with three wavebands in seven steps. The root mean square errors (RMSEs) for training (n=210) and testing (n=53) dataset were 6.5% and 5.8%, respectively. Principal component analysis showed that the first principal component could explain approximately 80% of the variance of the original hyperspectral reflectance. The regression model with the first two principal components predicted a disease severity with RMSEs of 16.3% and 13.9% for the training and testing dataset, respec-tively. Partial least-square regression with seven extracted factors could most effectively predict disease severity compared with other statistical methods with RMSEs of 4.1% and 2.0% for the training and testing dataset, respectively. Our research demon-strates that it is feasible to estimate the disease severity of rice brown spot using hyperspectral reflectance data at the leaf level.展开更多
Kiwifruit canker and brown spot are significant diseases affecting kiwis,caused by Pseudomonas syringae patho-genic variations(Pseudomonas syringae pv.Actinidiae(Psa))and Corynesporapolytica(Corynespora cassiicola).At ...Kiwifruit canker and brown spot are significant diseases affecting kiwis,caused by Pseudomonas syringae patho-genic variations(Pseudomonas syringae pv.Actinidiae(Psa))and Corynesporapolytica(Corynespora cassiicola).At present,the research on canker disease and brown spot disease mainly focuses on the isolation and identification of pathogenic bacteria,drug control,resistance gene mining and functional verification.Practice has proved that breeding disease resistant varieties are an effective method to control canker disease and brown spot disease.However,most existing cultivars lack genes for canker and brown spot resistance.Wild kiwifruit resources in nat-ure exhibit extensive genetic diversity due to prolonged natural selection,containing numerous resistance genes.But,due to insufficient understanding of the resistance of most kiwifruit varieties(lines)to canker disease and brown spot disease,some high-quality resources have not been fully utilized.The incidence of canker and brown spot of 18 kiwifruit cultivars(lines)was measured by inoculating isolated branches and leaves,and their resistance to canker and brown spot was analyzed according to the length,disease index,mean diameter,and systematic clustering.The results were as follows:Among 18 different kiwifruit varieties(lines)for canker disease,there were two highly resistant materials,eight disease-resistant materials,four disease-susceptible materials,and two highly susceptible materials.Moreover,regarding brown spot disease,there were one highly resistant material,five dis-ease-resistant materials,four susceptible materials,and three highly susceptible materials.Furthermore,four resources were resistant to both diseases.The outcomes provided a theoretical basis for breeding kiwifruit against canker and brown spot.展开更多
Based on the field hyperspectral data from the analytical spectral devices (ASD) spectrometer, we characterized the spectral properties of rice canopies infested with brown spot disease and selected spectral regions...Based on the field hyperspectral data from the analytical spectral devices (ASD) spectrometer, we characterized the spectral properties of rice canopies infested with brown spot disease and selected spectral regions and bands sensitive to four severity degrees (severe, moderate, light, and healthy). The results show that the curves' variation on the original and the first- and second-order de- rivative curves are greatly different, but the spectral difference in the near-infrared region is the most obvious for each level. Specifically, the peaks are located at 822, 738, and 793 nm, while the valleys are located at 402, 570, and 753 run, respectively. The sensitive regions are between 430-520, 530-550, and 650-710 nm, and the bands are 498, 539, and 673 nm in the sensitivity analysis, while they are in the ranges of 401-530, 550-730 as well as at 498 nm and 678 nm in the continuum removal.展开更多
基金supported by the National High Technology Research and Development Program of China (Grant No. 2006AA10Z203) the National Natural Science Foundation of China (Grant No. 40571115).
文摘Large-scale farming of agriculture crops requires real-time detection of disease for field pest management. Hyperspectral remote sensing data generally have high spectral resolution, which could be very useful for detecting disease stress in green vegetation at the leaf and canopy levels. In this study, hyperspectral reflectances of rice in the laboratory and field were measured to characterize the spectral regions and wavebands, which were the most sensitive to rice brown spot infected by Bipolaris oryzae (Helminthosporium oryzae Breda. de Hann). Leaf reflectance increased at the ranges of 450 to 500 nm and 630 to 680 nm with the increasing percentage of infected leaf surface, and decreased at the ranges of 520 to 580 nm, 760 to 790 nm, 1550 to 1750 nm, and 2080 to 2350 nm with the increasing percentage of infected leaf surface respectively. The sensitivity analysis and derivative technique were used to select the sensitive wavebands for the detection of rice brown spot infected by B. oryzae. Ratios of rice leaf reflectance were evaluated as indicators of brown spot. R669/R746 (the reflectance at 669 nm divided by the reflectance at 746 nm, the following ratios may be deduced by analogy), R702/R718, R692/R530, R692/R732, R535/R746, R521/R718, and R569/R718 increased significantly as the incidence of rice brown spot increased regardless of whether it's at the leaf or canopy level. R702/R718, R692/R530, R692/R732 were the best three ratios for estimating the disease severity of rice brown spot at the leaf and canopy levels. This result not only confirms the capability of hyperspectral remote sensing data in characterizing crop disease for precision pest management in the real world, but also testifies that the ratios of crop reflectance is a useful method to estimate crop disease severity.
基金Supported by Major Special Project of Guizhou Branch([2011] No.6003)National Natural Science Foundation of China (41040039)
文摘[Objective] The paper was to understand the suitable meteorological indexes and key meteorological factors for infection and prevalence of tobacco brown spot. [ Method] Tobacco brown spot disease in five topical mountainous climatic areas of Guizhou Province was investigated, and the difference of biological characteristics of different strains was analyzed indoor. Different meteorological conditions (light, temperature and humidity) were simulated in artificial climate box by using the uniform design method, and the difference of infection ability of Alternaria alternate in different climate zones was analyzed in leaves in vitro by hanging drop method. [ Result] The infection rate of A. alternate in different climate zones of Guizhou Province showed certain difference. In low temperature and mid- die humidity (the humidity is 50% -60%, the temperature is 10 -20 ℃) conditions, the pathogen could infect tobacco leaves, various strains had certain difference, but the difference was small. [ Conclusion] The paper provided theoretical basis for prevalence prediction and control of tobacco brown spot.
基金supported by the National High-Tech R&D Program of China (2012AA10A305 and 2011AA10A103)
文摘The bacterial brown spot disease(BBS), caused primarily by Pseudomonas syringae pv. syringae van Hall(Pss), reduces plant vigor, yield and quality in maize. To reveal the nature of the defense mechanisms and identify genes involved in the effective host resistance, the dynamic changes of defense transcriptome triggered by the infection of Pss were investigated and compared between two maize near-isogenic lines(NILs). We found that Pss infection resulted in a sophisticated transcriptional reprogramming of several biological processes and the resistant NIL employed much faster defense responses than the susceptible NIL. Numerous genes encoding essential components of plant basal resistance would be able to be activated in the susceptible NIL, such as PEN1, PEN2, PEN3, and EDR1, however, in a basic manner, such resistance might not be sufficient for suppressing Pss pathogenesis. In addition, the expressions of a large number of PTI-, ETI-, PR-, and WRKY-related genes were pronouncedly activated in the resistant NIL, suggesting that maize employ a multitude of defense pathways to defend Pss infection. Six R-gene homologs were identified to have significantly higher expression levels in the resistant NIL at early time point, indicating that a robust surveillance system(gene-to-gene model) might operate in maize during Pss attacks, and these homolog genes are likely to be potential candidate resistance genes involved in BBS disease resistance. Furthermore, a holistic group of novel pathogen-responsive genes were defined, providing the repertoire of candidate genes for further functional characterization and identification of their regulation patterns during pathogen infection.
基金the Hi-Tech Research and Development Program (863) of China (No. 2006AA10Z203)the National Scienceand Technology Task Force Project (No. 2006BAD10A01), China
文摘Detecting plant health conditions plays a key role in farm pest management and crop protection. In this study, measurement of hyperspectral leaf reflectance in rice crop (Oryzasativa L.) was conducted on groups of healthy and infected leaves by the fungus Bipolaris oryzae (Helminthosporium oryzae Breda. de Hann) through the wavelength range from 350 to 2 500 nm. The percentage of leaf surface lesions was estimated and defined as the disease severity. Statistical methods like multiple stepwise regression, principal component analysis and partial least-square regression were utilized to calculate and estimate the disease severity of rice brown spot at the leaf level. Our results revealed that multiple stepwise linear regressions could efficiently estimate disease severity with three wavebands in seven steps. The root mean square errors (RMSEs) for training (n=210) and testing (n=53) dataset were 6.5% and 5.8%, respectively. Principal component analysis showed that the first principal component could explain approximately 80% of the variance of the original hyperspectral reflectance. The regression model with the first two principal components predicted a disease severity with RMSEs of 16.3% and 13.9% for the training and testing dataset, respec-tively. Partial least-square regression with seven extracted factors could most effectively predict disease severity compared with other statistical methods with RMSEs of 4.1% and 2.0% for the training and testing dataset, respectively. Our research demon-strates that it is feasible to estimate the disease severity of rice brown spot using hyperspectral reflectance data at the leaf level.
基金supported by the following grants:Science and Technology Support Plan of Guizhou Province:Breeding Research and Demonstration of all-Red Bud Transformation of“GH-1”Clone of“Hong yang”Kiwifruit(Guizhou Family Combination Support[2021]General 234)the National Key Research and Development Program“Quality and Efficiency Improvement Technology Integration and Demonstration of Advantageous Characteristic Industries in Guizhou Karst Mountain Area(2021YFD1100300)”Post-Subsidy FundTask 3 of National Key Research and Development Program,Green Prevention and Control Technology Integration and Demonstration of Main Diseases and Insect Pests of Kiwifruit in Shuicheng City,China(2022YFD1601710-3).
文摘Kiwifruit canker and brown spot are significant diseases affecting kiwis,caused by Pseudomonas syringae patho-genic variations(Pseudomonas syringae pv.Actinidiae(Psa))and Corynesporapolytica(Corynespora cassiicola).At present,the research on canker disease and brown spot disease mainly focuses on the isolation and identification of pathogenic bacteria,drug control,resistance gene mining and functional verification.Practice has proved that breeding disease resistant varieties are an effective method to control canker disease and brown spot disease.However,most existing cultivars lack genes for canker and brown spot resistance.Wild kiwifruit resources in nat-ure exhibit extensive genetic diversity due to prolonged natural selection,containing numerous resistance genes.But,due to insufficient understanding of the resistance of most kiwifruit varieties(lines)to canker disease and brown spot disease,some high-quality resources have not been fully utilized.The incidence of canker and brown spot of 18 kiwifruit cultivars(lines)was measured by inoculating isolated branches and leaves,and their resistance to canker and brown spot was analyzed according to the length,disease index,mean diameter,and systematic clustering.The results were as follows:Among 18 different kiwifruit varieties(lines)for canker disease,there were two highly resistant materials,eight disease-resistant materials,four disease-susceptible materials,and two highly susceptible materials.Moreover,regarding brown spot disease,there were one highly resistant material,five dis-ease-resistant materials,four susceptible materials,and three highly susceptible materials.Furthermore,four resources were resistant to both diseases.The outcomes provided a theoretical basis for breeding kiwifruit against canker and brown spot.
基金Supported by the National Natural Science Foundation of China (41071276 and 41101395)China Postdoctoral Science Foundation (20110490317)Postdoctoral Science Foundation of Beijing Academy of Agriculture and Forestry Sciences (2011)
文摘Based on the field hyperspectral data from the analytical spectral devices (ASD) spectrometer, we characterized the spectral properties of rice canopies infested with brown spot disease and selected spectral regions and bands sensitive to four severity degrees (severe, moderate, light, and healthy). The results show that the curves' variation on the original and the first- and second-order de- rivative curves are greatly different, but the spectral difference in the near-infrared region is the most obvious for each level. Specifically, the peaks are located at 822, 738, and 793 nm, while the valleys are located at 402, 570, and 753 run, respectively. The sensitive regions are between 430-520, 530-550, and 650-710 nm, and the bands are 498, 539, and 673 nm in the sensitivity analysis, while they are in the ranges of 401-530, 550-730 as well as at 498 nm and 678 nm in the continuum removal.