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Double-stranded DNA breaks and gene functions in recombination and meiosis 被引量:1
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作者 Wuxing Li Hong Ma 《Cell Research》 SCIE CAS CSCD 2006年第5期402-412,共11页
Meiotic prophase I is a long and complex phase. Homologous recombination is an important process that occurs between homologous chromosomes during meiotic prophase I. Formation of chiasmata, which hold homologous chro... Meiotic prophase I is a long and complex phase. Homologous recombination is an important process that occurs between homologous chromosomes during meiotic prophase I. Formation of chiasmata, which hold homologous chromosomes together until the metaphase I to anaphase I transition, is critical for proper chromosome segregation. Recent studies have suggested that the SPO 11 proteins have conserved functions in a number of organisms in generating sites of double-stranded DNA breaks (DSBs) that are thought to be the starting points of homologous recombination. Processing of these sites of DSBs requires the function of RecA homologs, such as RAD5 1, DMC 1, and others, as suggested by mutant studies; thus the failure to repair these meiotic DSBs results in abnormal chromosomal alternations, leading to disrupted meiosis. Recent discoveries on the functions of these RecA homologs have improved the understanding of the mechanisms underlying meiotic homologous recombination. 展开更多
关键词 MEIOSIS homologous recombination double-stranded dna breaks SPO11 RAD51 DMC 1
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Cellular processing determinants for the activation of damage signals in response to topoisomerase I-linked DNA breakage
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作者 Ting-Hsiang Huang Hsiang-Chin Chen Shang-Min Chou Yu-Chen Yang Jia-Rong Fan Tsai-Kun Li 《Cell Research》 SCIE CAS CSCD 2010年第9期1060-1075,共16页
Recent studies have suggested an involvement of processing pathways for the initiation of cellular responses induced by topoisomerase-targeting drugs. Here, we showed that cellular exposure to camptothecin (CPT) ind... Recent studies have suggested an involvement of processing pathways for the initiation of cellular responses induced by topoisomerase-targeting drugs. Here, we showed that cellular exposure to camptothecin (CPT) induced formation of topoisomerase I cleavable complex (TOPlcc), degradation of TOP1 and activation of DNA damage responses (DDR). Transcription and proteasome-dependent proteolysis, but not replication, were involved in CPTo indneed TOPl degradation, while none of above three processing activities affected TOPlcc formation. Replication- and transcription-initiated proeessing (RIP and TIP) of TOPlee were identified as two independent pathways, which contribute distinctly to various CPT-activated DDR. Specifically, in cycling cells, RIP-processed TOPlec triggered the CPT-induced RPA pbosphorylation. At higher CPT dosages, the TIP pathway is required for other DDR activation, including ATM, p53 and Chkl/2 phosphorylation. The TIP pathway was further demonstrated to be S-phase independent by using three nonreplicating cell models. Furthermore, the effect of proteasome inhibitors mimicked that of transcription inhibition on the CPT-induced activation of DDR, suggesting the involvement of proteasome in the TIP pathway. Interestingly, the TIP pathway was important for TOPlcc-activated, but not ionization radiationactivated ATM, p53 and Chk2 phosphorylation. We have also found that pharmacological interferences of TIP and RIP pathways distinctively modulated the CPT-induced cell killing with treatments at low and high dosages, respec- tively. Together, our results support that both RIP and TIP pathways of TOPlcc are required for the activation of CPT-induced DDR and cytotoxicity. 展开更多
关键词 cleavable complex PROCESSING DOWNREGULATION protein-linked dna break dna damage responses
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DEtail-seq is an ultra-efficient and convenient method for meiotic DNA break profiling in multiple organisms
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作者 Wei Xu Chao Liu +6 位作者 Zhe Zhang Changbin Sun Qin Li Kuan Li Hui Jiang Wei Li Qianwen Sun 《Science China(Life Sciences)》 SCIE CAS CSCD 2023年第6期1392-1407,共16页
Programmed DNA double-strand break(DSB)formation is a crucial step in meiotic recombination,yet techniques for highefficiency and precise mapping of the 3’ends of DSBs are still in their infancy.Here,we report a nove... Programmed DNA double-strand break(DSB)formation is a crucial step in meiotic recombination,yet techniques for highefficiency and precise mapping of the 3’ends of DSBs are still in their infancy.Here,we report a novel technique,named DNA End tailing and sequencing(DEtail-seq),which can directly and ultra-efficiently characterize the 3’ends of meiotic DSBs with near single-nucleotide resolution in a variety of species,including yeast,mouse,and human.We find that the 3’ends of meiotic DSBs are stable without significant resection in budding yeast.Meiotic DSBs are strongly enriched in de novo H3K4me3 peaks in the mouse genome at leptotene stage.We also profile meiotic DSBs in human and find DSB hotspots are enriched near the common fragile sites during human meiosis,especially at CCCTC-binding factor(CTCF)-associated enhancers.Therefore,DEtail-seq provides a powerful method to detect DSB ends in various species,and our results provide new insights into the distribution and regulation of meiotic DSB hotspots. 展开更多
关键词 MEIOSIS DSB dna break fragile site ENHANCER SPERMATOGENESIS
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DNA聚合酶θ:易错的多功能DNA末端修复分子 被引量:1
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作者 王瑶 陈国江 +3 位作者 冯健男 石艳春 王晶 郑源强 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2024年第3期493-503,共11页
DNA聚合酶θ(DNA polymerase theta,Polθ)是一种广泛存在于动植物中的DNA修复酶。它在选择性末端连接(alternative end-joining,Alt-EJ)途径中发挥着关键作用,常参与DNA双链断裂(DNA double-strand breaks,DSB)损伤修复。在正常生理状... DNA聚合酶θ(DNA polymerase theta,Polθ)是一种广泛存在于动植物中的DNA修复酶。它在选择性末端连接(alternative end-joining,Alt-EJ)途径中发挥着关键作用,常参与DNA双链断裂(DNA double-strand breaks,DSB)损伤修复。在正常生理状态下,Polθ主要调控基因组稳定性。然而,在恶性肿瘤发生时,Polθ表现出异常高表达水平,并参与调控肿瘤细胞的恶性转变过程。研究表明,抑制Polθ活性可导致同源重组(homologous recombination,HR)缺陷的肿瘤细胞发生合成致死(synthetic lethality,SL)。因此,已经开发出多种针对Polθ的小分子抑制剂,可与其他化疗药物联合使用以抑制恶性肿瘤的发展。此外,敲除或抑制Polθ活性还能增加HR修复效率,从而提高外源基因靶向整合效果。本文综述了Polθ及其介导的Alt-EJ修复机制在生物学功能方面的最新研究进展,为靶向Polθ在肿瘤治疗和基因编辑方面的应用提供理论基础。 展开更多
关键词 dna聚合酶θ dna双链断裂修复 基因组稳定性 肿瘤抑制 靶向整合
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月球辐射环境致DNA链断裂损伤规律的仿真研究
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作者 贾鑫禹 蔡明辉 +4 位作者 杨涛 许亮亮 夏清 韩瑞龙 韩建伟 《载人航天》 CSCD 北大核心 2024年第2期167-173,共7页
月球表面缺乏磁场和大气的保护,其辐射环境长期处于极端恶劣的水平,对探月航天员的健康构成了严重威胁。针对月表面无屏蔽、航天服屏蔽和月面基地屏蔽条件下的空间辐射环境,运用基于蒙特卡洛方法的Geant4-DNA仿真软件,研究了单细胞核内... 月球表面缺乏磁场和大气的保护,其辐射环境长期处于极端恶劣的水平,对探月航天员的健康构成了严重威胁。针对月表面无屏蔽、航天服屏蔽和月面基地屏蔽条件下的空间辐射环境,运用基于蒙特卡洛方法的Geant4-DNA仿真软件,研究了单细胞核内DNA在上述环境下的链断裂损伤规律。结果表明:质子引起的双链断裂比例低于铁离子;无屏蔽状态下,若爆发太阳粒子事件,DNA结构将在短期内受到严重破坏,链断裂总数可达2×10^(6)个以上,约占细胞核内碱基对总数的0.039%;银河宇宙线环境中,辐射风险主要由长期累计剂量引起,质子凭借更高的通量,拥有了比铁离子更强的DNA破坏效果;但在有屏蔽状态下,DNA结构的损伤状况得到了明显改善,尤其是爆发太阳粒子事件这种极端情况下,最多减少了99.96%的链断裂数。 展开更多
关键词 月表 宇宙线 太阳质子 dna链断裂 辐射损伤
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川芎嗪通过RAD52调控乳腺癌细胞DNA损伤修复
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作者 黄溥婉 陈思龙 +2 位作者 唐喜军 伍湘峰 李莉萍 《现代肿瘤医学》 CAS 2024年第1期47-52,共6页
目的:探究TMP对乳腺癌BT474细胞增殖、细胞周期及其调控蛋白表达与DNA双链断裂修复通路的相关性。方法:CCK8法测定TMP对乳腺癌BT474细胞的增殖抑制情况;流式细胞术测定TMP对细胞周期的影响;单细胞凝胶电泳测定分析TMP对损伤后细胞DSBs... 目的:探究TMP对乳腺癌BT474细胞增殖、细胞周期及其调控蛋白表达与DNA双链断裂修复通路的相关性。方法:CCK8法测定TMP对乳腺癌BT474细胞的增殖抑制情况;流式细胞术测定TMP对细胞周期的影响;单细胞凝胶电泳测定分析TMP对损伤后细胞DSBs累积情况的影响;Isce-I内切酶系统检测TMP对修复通路活性的影响;Western blotting检测DSBs修复通路相关染色体结合蛋白表达水平变化。结果:TMP通过使细胞阻滞在G_(1)期呈浓度依赖性抑制BT474细胞增殖,显著减少体内由Zeocin导致的细胞拖尾DNA含量(P<0.05);TMP显著增加BT474细胞对RAD52、ERCC1、XRCC4以及DNA LigⅣ蛋白募集,减少对KU80蛋白募集,促进了SSA以及NHEJ通路修复活性(P<0.05)。结论:TMP通过阻滞BT474细胞停留在G_(1)期使其发挥增殖抑制作用的机制之一;TMP通过增强损伤缺口对各个通路的关键染色体结合蛋白募集,促进SSA与NHEJ修复通路活性从而减少DNA损伤。 展开更多
关键词 dna双链断裂修复 川芎嗪 乳腺癌细胞
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Regulation of DNA break repair by transcription and RNA 被引量:2
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作者 Jian Ouyang Li Lan Lee Zou 《Science China(Life Sciences)》 SCIE CAS CSCD 2017年第10期1081-1086,共6页
Repair of DNA double-strand breaks(DSBs) via the homologous recombination(HR) pathway is a highly regulated process. A number of proteins that participate in HR are intricately modulated by the cell cycle and chromati... Repair of DNA double-strand breaks(DSBs) via the homologous recombination(HR) pathway is a highly regulated process. A number of proteins that participate in HR are intricately modulated by the cell cycle and chromatin environments of DSBs. Recent studies have revealed a clear impact of transcription on HR in transcribed regions of the genome. Several models have been put forth to explain how the process of transcription and/or its RNA products may influence HR. Here we discuss the results and models from these studies, presenting an emerging view of transcription-coupled DSB repair. 展开更多
关键词 dna break repair TRANSCRIPTION RNA
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The role of NBS1 in DNA double strand break repair, telomere stability, and cell cycle checkpoint control 被引量:14
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作者 Ying Zhang Junqing Zhou Chang UK Lim 《Cell Research》 SCIE CAS CSCD 2006年第1期45-54,共10页
The genomes of eukaryotic cells are under continuous assault by environmental agents and endogenous metabolic byproducts. Damage induced in DNA usually leads to a cascade of cellular events, the DNA damage response. F... The genomes of eukaryotic cells are under continuous assault by environmental agents and endogenous metabolic byproducts. Damage induced in DNA usually leads to a cascade of cellular events, the DNA damage response. Failure of the DNA damage response can lead to development of malignancy by reducing the efficiency and fidelity of DNA repair. The NBS1 protein is a component of the MRE11/RAD50/NBS 1 complex (MRN) that plays a critical role in the cellular response to DNA damage and the maintenance of chromosomal integrity. Mutations in the NBS1 gene are responsible for Nijmegen breakage syndrome (NBS), a hereditary disorder that imparts an increased predisposition to development of malignancy. The phenotypic characteristics of cells isolated from NBS patients point to a deficiency in the repair of DNA double strand breaks. Here, we review the current knowledge of the role of NBS1 in the DNA damage response. Emphasis is placed on the role of NBS1 in the DNA double strand repair, modulation of the DNA damage sensing and signaling, cell cycle checkpoint control and maintenance oftelomere stability. 展开更多
关键词 Nijmegen breakage syndrome NBS 1 dna damage response dna double strand break cell cycle checkpoint control telomere maintenance
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DNA Double-Strand Breaks,Potential Targets for HBV Integration 被引量:2
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作者 胡晓文 林菊生 +4 位作者 谢琼慧 任精华 常莹 吴文杰 夏羽佳 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 2010年第3期265-270,共6页
Hepatitis B virus(HBV)-induced hepatocellular carcinoma(HCC) is one of the most fre-quently occurring cancers.Hepadnaviral DNA integrations are considered to be essential agents which can promote the process of the he... Hepatitis B virus(HBV)-induced hepatocellular carcinoma(HCC) is one of the most fre-quently occurring cancers.Hepadnaviral DNA integrations are considered to be essential agents which can promote the process of the hepatocarcinogenesis.More and more researches were designed to find the relationship of the two.In this study,we investigated whether HBV DNA integration occurred at sites of DNA double-strand breaks(DSBs),one of the most detrimental DNA damage.An 18-bp I-SceI homing endonuclease recognition site was introduced into the DNA of HepG2 cell line by stable DNA transfection,then cells were incubated in patients’ serum with high HBV DNA copies and at the same time,DSBs were induced by transient expression of I-SceI after transfection of an I-SceI expression vector.By using nest PCR,the viral DNA was detected at the sites of the break.It appeared that integra-tion occurred between part of HBV x gene and the I-SceI induced breaks.The results suggested that DSBs,as the DNA damages,may serve as potential targets for hepadnaviral DNA insertion and the integrants would lead to widespread host genome changes necessarily.It provided a new site to investi-gate the integration. 展开更多
关键词 dna double-strand breaks hepatitis B virus INTEGRATION non-homologous end joining
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木犀草素对人胃癌细胞DNA双链断裂及同源重组修复的影响 被引量:2
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作者 李冲慧 米阳 +4 位作者 任飞飞 孙向东 周潇潇 王万聪 夏兴洲 《胃肠病学和肝病学杂志》 CAS 2023年第4期385-391,共7页
目的探讨木犀草素对人胃癌细胞DNA双链断裂(DNA double-strand breaks,DSBs)及同源重组(homologous recombination,HR)修复的影响。方法采用流式细胞仪检测作用木犀草素后各组细胞内ROS水平变化及GFP阳性率;彗星实验检测木犀草素对DSBs... 目的探讨木犀草素对人胃癌细胞DNA双链断裂(DNA double-strand breaks,DSBs)及同源重组(homologous recombination,HR)修复的影响。方法采用流式细胞仪检测作用木犀草素后各组细胞内ROS水平变化及GFP阳性率;彗星实验检测木犀草素对DSBs的影响;Western blotting检测DNA损伤标志性蛋白γH2AX和HR修复蛋白Rad51的表达;免疫荧光检测DNA损伤修复相关蛋白表达的募集情况。结果木犀草素以剂量依赖性方式增加胃癌细胞内ROS含量;用I-Scel质粒转染DR-GFP后木犀草素处理组GFP阳性细胞比例明显少于未加木犀草素组;但彗星实验表明,木犀草素处理后人胃癌AGS细胞后增加彗星尾炬;经木犀草素处理后,胃癌细胞中DNA的γH2AX上调,修复关键蛋白Rad51的表达下调;免疫荧光结果表明,在木犀草素处理人胃癌AGS细胞后HR修复蛋白Rad51在DNA损伤位点的募集减少。结论木犀草素能够促进人胃癌细胞DSBs,并抑制其HR修复。 展开更多
关键词 木犀草素 dna损伤 dna双链断裂 同源重组修复 胃癌细胞
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Maternal gene Ooep may participate in homologous recombination-mediated DNA double-strand break repair in mouse oocytes
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作者 Da-Jian He Lin Wang +5 位作者 Zhi-Bi Zhang Kun Guo Jing-Zheng Li Xie-Chao He Qing-Hua Cui Ping Zheng 《Zoological Research》 SCIE CAS CSCD 2018年第6期387-395,共9页
DNA damage in oocytes can cause infertility and birth defects. DNA double-strand breaks (DSBs) are highly deleterious and can substantially impair genome integrity. Homologous recombination (HR)-mediated DNA DSB r... DNA damage in oocytes can cause infertility and birth defects. DNA double-strand breaks (DSBs) are highly deleterious and can substantially impair genome integrity. Homologous recombination (HR)-mediated DNA DSB repair plays dominant roles in safeguarding oocyte quantity and quality. However, little is known regarding the key players of the HR repair pathway in oocytes. Here, we identified oocyte-specific gene Ooep as a novel key component of the HR repair pathway in mouse oocytes. OOEP was required for efficient ataxia telangiectasia mutated (ATM) kinase activation and Rad51 recombinase (RAD51) focal accumulation at DNA DSBs. Ooep null oocytes were defective in DNA DSB repair and prone to apoptosis upon exogenous DNA damage insults. Moreover, Ooep null oocytes exhibited delayed meiotic maturation. Therefore, OOEP played roles in preserving oocyte quantity and quality by maintaining genome stability. Ooep expression decreased with the advance of maternal age, suggesting its involvement in maternal aging. 展开更多
关键词 Ooep Homologous recombination dna double-strand break repair ATM RAD51
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Analysis of heavy-ion-induced DNA strand breaks in plasmid pUC18
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作者 GUO Hui-jun1,LIU Lu-xiang1,LI Jia-cai2,ZHAO Kui3,SUI Li3,ZHAO Lin-shu1,ZHAO Shi-rong1(1.The National Key Facility for Crop Gene Resources and Genetic Improvement,institute of Crop Science,Chinese Academy of Agricultural Sciences,Beijing 100081,China 2.Institute of High Energy Physics,Chinese Academy of Sciences,Beijing 100093,China 3.Department of Nuclear Physics,China Institute of Atomic Energy,Beijing 102413,China) 《湖南农业大学学报(自然科学版)》 CAS CSCD 北大核心 2007年第S1期242-,共1页
Plasmid DNA was irradiated or implanted by mixed particle field(CR) or lithium-ion-beam to detect strand breaks.The primary results showed that mixed particle field could induce single and double strand breaks with po... Plasmid DNA was irradiated or implanted by mixed particle field(CR) or lithium-ion-beam to detect strand breaks.The primary results showed that mixed particle field could induce single and double strand breaks with positive linear-dose-effects;most of sequence changes induced by CR were point mutant.Lithium-ion-beam could induce strand breaks also,but it was only at dose of 20Gy. 展开更多
关键词 dna Analysis of heavy-ion-induced dna strand breaks in plasmid pUC18 CR
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Comparison of DNA double-strand breaks induced by ^(16)O^(8+) in deproteinized DNA and intact cells
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作者 Zhou Guang-Ming Wei Zeng-Quan +4 位作者 Li Wen-Jian Gao Qing-Xiang He Jing Li Qiang Wang Ju-Fang (Institute of Modern Physics, the Chinese Academy of Sciences, Lanzhou 720000Department of Biology, Lanzhou University, Lanzhou 730000) 《Nuclear Science and Techniques》 SCIE CAS CSCD 1998年第4期235-238,共4页
The yield of DNA double-strand breaks (DSBs) is sure to be influenced by theenvironment around DNA molecule. Inverse pulsed-field gel electrophoresis (PIGE) has beenapplied to compare the sensitivity of B16 cells and ... The yield of DNA double-strand breaks (DSBs) is sure to be influenced by theenvironment around DNA molecule. Inverse pulsed-field gel electrophoresis (PIGE) has beenapplied to compare the sensitivity of B16 cells and their DNA in DSBs induced by 75 MeV/u16O8+ beam. Results show that the percentages of DNA released from the plug(PR) in bothkinds of tile samples increase with the dose and approach a similar quasi-threshold of about81%. A simple new equation was presented to calculate the break level of DNA molecules.Within a certain dose, the relationship between the break level and the dose is linear. Theyield of DSBs in deproteinized DNA was 1.11 DSBs/100 Mbp/Gy, while that in intact cells was0.60DSBs/100Mbp/Gy. It is testified that deproteinized DNA is more sensitive to oxygen ionsirradiation than intact cells. 展开更多
关键词 dna 双链断开 ^16O^8+感应
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DETECTION OF STRAND BREAKS OF DNA IN HUMAN EARLY CHORIONIC VILLUS CELLS INDUCED BY DIAGNOSTIC ULTRASOUND USING ^(32)P-LABELED ALU HYBRIDIZATION
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作者 王彩凤 李旭 张蕴璟 《Journal of Pharmaceutical Analysis》 SCIE CAS 2006年第1期57-60,共4页
Objective To explore if strand breaks of DNA in human early chorionic villus cells in uterus were induced by diagnostic ultrasound and to evaluate the method used for detection of single-stranded breaks and double-str... Objective To explore if strand breaks of DNA in human early chorionic villus cells in uterus were induced by diagnostic ultrasound and to evaluate the method used for detection of single-stranded breaks and double-stranded breaks in human DNA. Methods 60 normal pregnant women aged 20-30, who underwent artificial abortion during 6-8 weeks of gestation, were randomly divided into 2 experimental groups: All 30 cases were exposed to diagnostic ultrasound in uterus for 10 minutes, and 24 hours later chorionic villi were extracted; the other 30 cases were taken as the control group. Single-stranded DNA and double-stranded DNA in villus cells in all cases were isolated by the alkaline unwinding combined with hydroxylapatite chromatography, and were quantitatively detected using 32 P-labeled Alu probe for dot-blotting hybridization. Results There was no significant difference in quantity and percentage in single-stranded DNA and double-stranded DNA between 2 groups (P>0.05). 32 P-Alu probe could only hybridize with human DNA, and could detect DNA isolated from as few as 2.5×10 3 chorionic villus cells and 0.45ng DNA in human leukocytes. Conclusion The results suggested that there were no DNA strand damages in human chorionic villus cells when the uterus was exposed to diagnostic ultrasound for 10 minutes. The method,^(32)P-Alu probe for dot-blotting hybridization, was even more specific, sensitive and accurate than conventional approaches. 展开更多
关键词 diagnostic ultrasound early pregnancy chorionic villus in uterus dna single-stranded breaks(ssbs) double-stranded breaks(dsbs) ^(32)P-labeled Alu probe dot-blot hybridization
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DNA双链断裂修复缺陷在神经退行性疾病发生中的作用
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作者 接欣雨 唐铁山 刘红美 《生物医学转化》 2023年第2期31-41,共11页
DNA双链断裂修复(DNA Double-Strand Break Repair,DSBR)在保持神经元基因组稳定性和细胞存活方面发挥着重要作用。DSBR主要通过同源重组(Homologous Recombination,HR)及非同源末端连接(Non-Homologous End Joining,NHEJ)来完成,这两... DNA双链断裂修复(DNA Double-Strand Break Repair,DSBR)在保持神经元基因组稳定性和细胞存活方面发挥着重要作用。DSBR主要通过同源重组(Homologous Recombination,HR)及非同源末端连接(Non-Homologous End Joining,NHEJ)来完成,这两种修复途径对于维持神经元的正常生理功能至关重要。另外,DSBR异常在多种神经退行性疾病中扮演重要角色,因此,深入剖析DSBR机制对于理解神经退行性疾病的病理发生及研发有效治疗手段具有重要意义。本文综述了常见的DSBR途径,并概述了DSBR异常与几种常见神经退行性疾病发病机制的最新研究进展。 展开更多
关键词 dna双链断裂修复 同源重组 非同源末端连接 神经退行性疾病
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非同源末端连接中DNA连接酶Ⅳ抑制剂研究进展
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作者 贺越 王秀梅 《陕西医学杂志》 CAS 2023年第3期358-360,F0003,共4页
DNA连接酶Ⅳ(LIG4)主要通过非同源末端连接(NHEJ)参与V(D)J重组和DNA双键断裂(DSB)修复,具有独特调控作用和广泛应用前景。研究发现,LIG4抑制剂在NHEJ中可作为增敏剂,与放化疗联合治疗肿瘤时具有较好的抗癌效果。此外,LIG4抑制剂还可作... DNA连接酶Ⅳ(LIG4)主要通过非同源末端连接(NHEJ)参与V(D)J重组和DNA双键断裂(DSB)修复,具有独特调控作用和广泛应用前景。研究发现,LIG4抑制剂在NHEJ中可作为增敏剂,与放化疗联合治疗肿瘤时具有较好的抗癌效果。此外,LIG4抑制剂还可作为一种有效的生化抑制剂介导CRISPR/Cas9基因编辑,有提高基因编辑效率的作用。近年来,许多研究基于此机制不断进行大规模药物筛选以发现新型抗癌药物,来为肿瘤治疗提供一种新思路。现对目前已报道的LIG4抑制剂及其衍生物的各种形式进行综述,并重点介绍目前应用较广的SCR7。 展开更多
关键词 dna连接酶Ⅳ抑制剂 非同源末端连接 dna双键断裂 dna修复 同源重组 肿瘤治疗
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Exposure to Long Magnetic Resonance Imaging Thermometry Does Not Cause Significant DNA Double-Strand Breaks on CF-1 Mice
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作者 Christopher Brian Abraham Sepideh Dadgar +2 位作者 Wely B. Floriano Michael Campbell Laura Curiel 《Journal of Modern Physics》 2022年第6期839-850,共12页
The purpose of the study was to investigate if the high gradient strength and slew rate used for long MRI-thermometry monitoring could cause DNA double-stranded breaks (DSBs). To this end, an enzyme-linked immunosorbe... The purpose of the study was to investigate if the high gradient strength and slew rate used for long MRI-thermometry monitoring could cause DNA double-stranded breaks (DSBs). To this end, an enzyme-linked immunosorbent assay (ELISA) was used to quantify &gamma;H2AX, a molecular marker for DSBs, in the blood of mice after a 6-hour exposure to magnetic resonance imaging (MRI). Fourteen CF-1 female mice were separated into 4 experimental groups: Untreated negative control, MRI-treated, MRI-Control, and exposed to ionizing radiation positive control. Untreated negative control was used as a baseline for ELISA to quantify &gamma;H2AX. MRI-treated consisted of a 6-hour continuous magnetic resonance imaging (MRI) echo planar imaging (EPI) sequence with a slew rate of 192 mT/m/s constituting a significantly longer imaging time than routine clinical imaging. MRI-control mice were maintained under the same conditions outside the MRI scanner for 6-hours. Mice in the irradiation group served as a positive control of DSBs and were exposed to either 2 Gy, 5 Gy or 10 Gy of ionizing radiation. DSBs in the blood lymphocytes from the treatment groups were analyzed using the &gamma;H2AX ELISA and compared. Total protein concentration in lysates was determined for each blood sample and averaged 1 ± 0.35 mg/mL. Irradiated positive controls were used to test radiation dose-dependency of the &gamma;H2AX ELISA assay where a linear dependency on radiation exposure was observed (r<sup>2</sup> = 0.93) between untreated and irradiated samples. Mean and standard error mean of &gamma;H2AX formation were calculated and compared between each treatment group. Repeated measures 1-way ANOVA showed statistically significant differences between the means of irradiated controls and both the MRI-control and MRI-treated groups. There was no statistically significant difference between the MRI-treated samples and the MRI-control groups. Our results show that long MRI exposure at a high slew rate did not cause increased levels of &gamma;H2AX when compared to control mice, suggesting that no increase in DSBs was caused by the long MR thermometry imaging session. The novelty of this work contradicts other studies that have suggested MRI may cause DSBs;this work suggests an alternative cause of DNA damage. 展开更多
关键词 γH2AX dna Damage MRI Thermometry GADOLINIUM Double-Stranded breaks (DSBs) ELISA Ionizing Radiation
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基于机器学习方法对人类基因组DNA双链断裂位点进行识别
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作者 董碧宇 刘国庆 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2023年第8期1153-1167,共15页
DNA双链断裂(double-strand break,DSB)是细胞中一种严重的DNA损伤形式,与包括癌症、重组异常、神经元发育异常在内的多种基因组不稳定性疾病密切相关。由于成本和技术门槛的限制,高通量测序技术绘制的高分辨率DSB图谱十分有限,这阻碍... DNA双链断裂(double-strand break,DSB)是细胞中一种严重的DNA损伤形式,与包括癌症、重组异常、神经元发育异常在内的多种基因组不稳定性疾病密切相关。由于成本和技术门槛的限制,高通量测序技术绘制的高分辨率DSB图谱十分有限,这阻碍了我们对不同物种基因组中DSB情况的认知。据此,我们建立了以随机森林(RF)、支持向量机(SVM)和逻辑回归(LR)三种分类器为基础算法的分类预测模型,对人类上皮细胞基因组DSB位点进行预测。除了之前预测研究中常用到的表观特征和DNA形状特征外,我们发现DNA序列特征(k-mer频数、GC含量、GC-偏移和互信息)也能表征DSB位点。同时,在考虑DNA物理性质、化学位移和自相关信息后,预测结果得到有效提高。将上述所有特征合并后进行预测,得到了较好的分类预测结果,其中逻辑回归(LR)的分类预测性能是最佳(AUC=0.97),与以往的预测结果相当(AUC=0.964)。另外,通过特征递增搜索方法,得到由294个特征组成的最优特征集,对应的AUC值达到0.974。 展开更多
关键词 双链断裂 分类预测 化学位移 dna物理性质 自相关
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“藕断丝连”的CRISPR/Cas:基因编辑中靶点滞留的作用与挑战
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作者 冯依力 陈若丹 谢安勇 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2024年第10期2621-2636,共16页
成簇规律间隔短回文重复(clustered regulation interspaced short palindromic repeats,CRISPR)和CRISPR相关蛋白质(CRISPR-associated protein,Cas)系统被广泛应用于基因组编辑、转录调控以及细胞实时成像等,并已在农业、工业和医学... 成簇规律间隔短回文重复(clustered regulation interspaced short palindromic repeats,CRISPR)和CRISPR相关蛋白质(CRISPR-associated protein,Cas)系统被广泛应用于基因组编辑、转录调控以及细胞实时成像等,并已在农业、工业和医学等领域展示出巨大的应用潜力。该技术的应用取决于CRISPR/Cas的五大属性:靶向、解旋、切割、滞留和旁切。本综述将主要以化脓链球菌(Streptococcus pyogenes)的CRISPR/Cas9为例,聚焦于CRISPR/Cas的滞留属性,梳理相关进展,讨论其在基因编辑技术开发中的应用与挑战。 展开更多
关键词 CRISPR/Cas9 靶点滞留 靶点解离 dna双链修复途径选择 基因编辑异质性
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精准序列替换基因组编辑技术研究进展 被引量:1
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作者 许永汉 齐泽宇 +2 位作者 李文静 赵啊慧 武德传 《云南农业大学学报(自然科学版)》 CAS CSCD 北大核心 2024年第2期162-175,共14页
利用基因组编辑技术可以对微生物、动植物和人类细胞系基因组进行精准的序列替换,加速生物育种进程和遗传性疾病治疗,从而在农业生产和医疗上取得突破。基因组序列替换策略主要分为2种:第1种依赖DNA双链断裂,包括将CRISPR-Cas分别与同... 利用基因组编辑技术可以对微生物、动植物和人类细胞系基因组进行精准的序列替换,加速生物育种进程和遗传性疾病治疗,从而在农业生产和医疗上取得突破。基因组序列替换策略主要分为2种:第1种依赖DNA双链断裂,包括将CRISPR-Cas分别与同源重组、单链退火、微同源末端连接等DNA修复途径相结合,或由位点特异性重组系统介导,实现精准的序列替换;第2种依赖DNA单链断裂,主要包括引导编辑、碱基编辑器等技术。本研究综述了不同精准序列替换策略和技术及相关研究进展,理清各策略和技术的优缺点,有助于根据基因组编辑的目的,选择适合的技术和方法实现精准高效的序列替换。 展开更多
关键词 基因组编辑 序列替换 dna双链断裂 dna单链断裂 dna修复
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