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Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia 被引量:2
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作者 Shi-Yu Lv Xia-Ying Ye +2 位作者 Zhong-Hu Li Peng-Fei Ma De-Zhu Li 《Plant Diversity》 SCIE CAS CSCD 2023年第2期147-155,共9页
Fargesia,the largest genus within the temperate bamboo tribe Arundinarieae,has more than 90 species mainly distributed in the mountains of Southwest China.The Fargesia bamboos are important components of the subalpine... Fargesia,the largest genus within the temperate bamboo tribe Arundinarieae,has more than 90 species mainly distributed in the mountains of Southwest China.The Fargesia bamboos are important components of the subalpine forest ecosystems that provide food and habitat for many endangered animals,including the giant panda.However,species-level identification of Fargesia is difficult.Moreover,the rapid radiation and slow molecular evolutionary rate of Fargesia pose a significant challenge to using DNA barcoding with standard plant barcodes(rbcL,matK,and ITS) in bamboos.With progress in the sequencing technologies,complete plastid genomes(plastomes) and nuclear ribosomal DNA(nrDNA)sequences have been proposed as organelle barcodes for species identification;however,these have not been tested in bamboos.We collected 196 individuals representing 62 species of Fargesia to comprehensively evaluate the discriminatory power of plastomes and nrDNA sequences compared to standard barcodes.Our analysis indicates that complete plastomes have substantially higher discriminatory power(28.6%) than standard barcodes(5.7%),whereas nrDNA sequences show a moderate improvement(65.4%) compared to ITS(47.2%).We also found that nuclear markers performed better than plastid markers,and ITS alone had higher discriminatory power than complete plastomes.The study also demonstrated that plastomes and nrDNA sequences can contribute to intrageneric phylogenetic resolution in Fargesia.However,neither of these sequences were able to discriminate all the sampled species,and therefore,more nuclear markers need to be identified. 展开更多
关键词 Fargesia Genome-skimming dna barcoding PLASTOME ribosomal dna
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Complete nuclear ribosomal DNA sequence amplification and molecular analyses of Bangia (Bangiales, Rhodophyta) from China 被引量:2
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作者 徐佳杰 姜波 +4 位作者 柴三明 何渊 朱建一 沈宗根 沈颂东 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2016年第5期1044-1053,共10页
Filamentous Bangia,which are distributed extensively throughout the world,have simple and similar morphological characteristics.Scientists can classify these organisms using molecular markers in combination with morph... Filamentous Bangia,which are distributed extensively throughout the world,have simple and similar morphological characteristics.Scientists can classify these organisms using molecular markers in combination with morphology.We successfully sequenced the complete nuclear ribosomal DNA.approximately 13 kb in length,from a marine Bangia population.We further analyzed the small subunit ribosomal DNA gene(nrSSU) and the internal transcribed spacer(ITS) sequence regions along with nine other marine,and two freshwater Bangia samples from China.Pairwise distances of the nrSSU and 5.8S ribosomal DNA gene sequences show the marine samples grouping together with low divergences(0-0.003;0-0.006,respectively) from each other,but high divergences(0.123-0.126;0.198,respectively) from freshwater samples.An exception is the marine sample collected from Weihai,which shows high divergence from both other marine samples(0.063-0.065;0.129,respectively) and the freshwater samples(0.097;0.120,respectively).A maximum likelihood phylogenetic tree based on a combined SSU-ITS dataset with maximum likelihood method shows the samples divided into three clades,with the two marine sample clades containing Bangia spp.from North America,Europe,Asia,and Australia;and one freshwater clade,containing Bangia atropurpurea from North America and China. 展开更多
关键词 BANGIA molecular analysis small subunit ribosomal dna gene(nrSSU) internal transcribed spacer(ITS) ribosomal dna
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Phylogeny of Ptychostomum (Bryaceae,Musci) inferred from sequences of nuclear ribosomal DNA internal transcribed spacer (ITS) and chloroplast rps4 被引量:2
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作者 Chen-Ying WANG Jian-Cheng ZHAO 《Journal of Systematics and Evolution》 SCIE CSCD 北大核心 2009年第4期311-320,共10页
The phylogeny of Ptychostomum was first spacer (ITS) region of the nuclear ribosomal (nr) DNA DNA rps4 sequences. Maximum parsimony, maximum undertaken based on analysis of the internal transcribed and by combinin... The phylogeny of Ptychostomum was first spacer (ITS) region of the nuclear ribosomal (nr) DNA DNA rps4 sequences. Maximum parsimony, maximum undertaken based on analysis of the internal transcribed and by combining data from nrDNA ITS and chloroplast likelihood, and Bayesian analyses all support the conclusion that the reinstated genus Ptychostomum is not monophyletic. Ptychostomum funkii (Schwagr.) J. R. Spence (≡ Bryum funkii Schwaigr.) is placed within a clade containing the type species of Bryum, B. argenteum Hedw. The remaining members of Ptychostomum investigated in the present study constitute another well-supported clade. The results are congruent with previous molecular analyses. On the basis of phylogenetic evidence, we agree with transferring B. amblyodon Mull. Hal. (≡ B. inclinatum (Brid.) Turton≡ Bryum archangelicum Bruch & Schimp.), Bryum lonchocaulon Mull. Hal., Bryum pallescens Schleich. ex Schwaigr., and Bryum pallens Sw. to Ptychostomum. 展开更多
关键词 Bryum molecular phylogeny nuclear ribosomal dna internal transcribed spacer sequences Ptychostomum rps4 sequences.
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Cytogenetic characterization of olive flounder Paralichthys olivaceus: DNA content, karyotype, AgNORs and location of major ribosomal genes 被引量:1
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作者 WANG Xubo ZHANG Quanqi CHEN Yanjie QI Jie WANG Zhigang WANG Xinglian 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2009年第4期72-77,共6页
A cytogenetic analysis of Paralichthys olivaceus was carried out using the flow cytometry method for DNA content, silver staining for the nucleolus organizer region (AgNORs) identification and one-color fluorescence... A cytogenetic analysis of Paralichthys olivaceus was carried out using the flow cytometry method for DNA content, silver staining for the nucleolus organizer region (AgNORs) identification and one-color fluorescence in situ hybridization (FISH) for chromosomal mapping of major ribosomal genes. Nuclear DNA content was estimated by flow cytometry method using Gallus domesticus erythrocytes as the internal reference standard. The C-value of this species was (0.737±0.024) pg, and the DNA contents of each chromosome were estimated to be 16.51 Mb to 39.50 Mb after paired according to the average relative length. The FISH probe was made by PCR amplification of a DNA fragment containing internal transcribed spacers ITS1 between 18S and 5.8S ribosomal RNA gene, and labeled by PCR incorporation of bio-16-dUTP. FISH signals and AgNORs were both located on the secondary constrictions of chromosome 1. These results will provide a better understanding of the cytogenetic information of this species and would help for further research of the karyotype evolution in the order Pleuronectiformes. 展开更多
关键词 dna content Rdna AGNORS FISH Paralichthys olivaceus
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DNA存储技术:挑战与未来 被引量:1
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作者 褚利康 何磊 韩达 《集成技术》 2024年第3期116-127,共12页
随着全球数据呈现指数级增长,当前的信息存储技术面临维护成本高昂、存储寿命有限等多个缺陷,逐渐无法满足日益凸显的需求。因此,迫切需要引入新的信息存储方法来解决这一问题。DNA作为一种天然的遗传信息载体,具备高存储密度、潜在低... 随着全球数据呈现指数级增长,当前的信息存储技术面临维护成本高昂、存储寿命有限等多个缺陷,逐渐无法满足日益凸显的需求。因此,迫切需要引入新的信息存储方法来解决这一问题。DNA作为一种天然的遗传信息载体,具备高存储密度、潜在低维护成本和长寿命等优势,因此被视为一种有潜力的新型信息存储介质。该文对DNA数据存储技术的基本原理和流程进行了概述,并回顾了其历史发展。同时,对当前基于DNA存储的领域仍面临的挑战进行了总结,如缓慢的数据写入和读取速度等,以及应对这些挑战的一些潜在策略。最后,为了满足全球对新存储方法的需求,该文指出了DNA数据存储技术的未来发展方向。 展开更多
关键词 dna 数据存储 dna序列 dna纳米技术 信息加密
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Taq DNA聚合酶的分子改造及其在探针法qPCR直扩体系中的应用
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作者 胡松青 袁家惠 +1 位作者 刘光毅 侯轶 《华南理工大学学报(自然科学版)》 EI CAS CSCD 北大核心 2024年第4期8-16,共9页
Taq DNA聚合酶作为实时荧光定量聚合酶链式反应(qPCR)技术的核心组分,其性能优劣直接影响qPCR技术的进一步发展。然而,野生型Taq DNA聚合酶的耐抑制剂性能差、延伸性能不足。为获得具有高性能的Taq DNA聚合酶,采用基因工程技术将双链DN... Taq DNA聚合酶作为实时荧光定量聚合酶链式反应(qPCR)技术的核心组分,其性能优劣直接影响qPCR技术的进一步发展。然而,野生型Taq DNA聚合酶的耐抑制剂性能差、延伸性能不足。为获得具有高性能的Taq DNA聚合酶,采用基因工程技术将双链DNA结合蛋白Sso7d或Sto7d融合在野生型Taq DNA聚合酶的N端或C端,构建了4个均可溶表达的改造体,再经过耐受性测试筛选较优的改造体,结果显示:改造体Taq-Sto的耐受性最高,其热稳定性不受影响,且在1 s/kbp的延伸条件下能成功扩增靶标,表明Taq-Sto具有增强的延伸性能,在TaqMan探针法qPCR体系中对腐殖酸、单宁酸、全血等抑制剂同样表现出良好的耐受性。EMSA实验发现:Taq-Sto对DNA模板的结合亲和力有所提高,有利于增强Taq-Sto对模板的竞争力;将Taq-Sto应用于非洲猪瘟病毒(ASFV)的TaqMan探针法qPCR检测,与商品化试剂相比,Taq-Sto具有更低的ASFV检出限,且在体积分数为2%~6%的猪粪便样本或猪肉样本中的检测灵敏度分别为100.0%和85.4%,说明Taq-Sto在直扩qPCR检测领域更具有优势。 展开更多
关键词 Taq dna聚合酶 双链dna结合蛋白 耐受性 聚合酶链式反应
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DNA损伤修复相关通路的合成致死靶点研究及其在卵巢癌中的应用和前景
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作者 程洪艳 栾文庆 昌晓红 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2024年第6期740-748,共9页
DNA损伤引发细胞启动一系列DNA损伤应答(DNA damage response,DDR),包括DNA损伤修复、细胞周期检查点激活、细胞周期阻滞、各种细胞内信号转导途径的活化和细胞凋亡等。DNA损伤修复(DNA damage repair)是细胞维持基因组稳定性的重要机制... DNA损伤引发细胞启动一系列DNA损伤应答(DNA damage response,DDR),包括DNA损伤修复、细胞周期检查点激活、细胞周期阻滞、各种细胞内信号转导途径的活化和细胞凋亡等。DNA损伤修复(DNA damage repair)是细胞维持基因组稳定性的重要机制,于2015年获得诺贝尔化学奖。DNA损伤修复途径主要包括:碱基切除修复(base-excision repair,BER)、核苷酸切除修复(nucleotide excision repair,NER)、错配修复(mismatch repair,MMR)、同源重组(homologous recombination,HR)和非同源末端连接(non-homologous end joining,NHEJ)等,分别在DNA单链断裂(single-strand break,SSB)或双链断裂(double-strand break,DSB)等损伤修复中发挥重要作用。DNA损伤修复缺陷与肿瘤发生发展密切相关,同时也是肿瘤治疗的重要靶点。DNA损伤修复通路的多聚ADP核糖聚合酶(poly-ADP-ribose polymerase,PARP)与乳腺癌易感基因BRCA 1/2等存在合成致死(synthetic lethality)作用,使PARP抑制剂(PARP inhibitor,PARPi)成为第一个也是目前唯一上市的肿瘤治疗合成致死靶药。PARPi在卵巢癌及多种实体瘤治疗中疗效良好,使DNA损伤修复及相关DDR通路的合成致死靶药研发成为热点,其他在研靶点主要包括:共济失调毛细血管扩张突变蛋白(ataxia telangiectasia-mutated protein,ATM)、共济失调毛细血管扩张与RAD3相关蛋白(ataxia telangiectasia and Rad3 related protein,ATR)、DNA依赖性蛋白质激酶催化亚单位(DNA-dependent protein kinase catalytic subunit,DNA-PKcs)、细胞周期检测点激酶1(checkpoint kinase1,CHK1)、细胞周期检测点激酶2(checkpoint kinase 2,CHK2)、阻止有丝分裂的蛋白质激酶WEE1等。PARPi与其他DDR靶药、抗血管生成药物及免疫检查点抑制剂的联用,有可能成为克服PARPi耐药、提高疗效的有效手段和发展前景。本文针对DNA损伤修复及相关DDR通路的关键分子和潜在肿瘤治疗靶点进行综述,阐述了DNA损伤修复相关通路的合成致死靶点研究及在卵巢癌的应用和前景,为基础研究及临床应用提供指导。 展开更多
关键词 卵巢癌 dna损伤应答 dna损伤修复 PARP抑制剂 合成致死 靶向治疗
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基于中医证候与精液质量相关参数构建精子DNA碎片预测模型与验证
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作者 周超 庾广聿 +4 位作者 阳绍华 高磊磊 金珍 蒋月园 李欢 《中国组织工程研究》 CAS 北大核心 2025年第13期2661-2668,共8页
背景:中医证候与精液质量相关参数相结合,共同预测精子DNA碎片指数(DNA fragmentation index,DFI)异常增高的发生并绘制列线图,能显著提高临床的实操性与应用效能,为临床全面评估精液质量,采取积极干预措施以改善临床结局及制定个体化... 背景:中医证候与精液质量相关参数相结合,共同预测精子DNA碎片指数(DNA fragmentation index,DFI)异常增高的发生并绘制列线图,能显著提高临床的实操性与应用效能,为临床全面评估精液质量,采取积极干预措施以改善临床结局及制定个体化医疗方案提供依据。目的:探讨基于中医证候与精液质量相关参数构建精子DNA碎片的预测模型与验证。方法:回顾性分析2019年7月至2021年7月在广西壮族自治区南溪山医院中医男科接受中医证候诊断及精子DNA碎片率检查的不育患者共420例,据《人类精液检查与处理实验室手册》(第6版),将其中137例精子DFI>30%患者纳入精子DFI异常增高组,将283例精子DFI≤30%作为对照组;首先采用单因素分析筛选精子DFI异常增高的影响因素,然后采用套索算法(LASSO)校正因子共线性问题并筛选出最佳匹配因子后,将其纳入多因素向前逐步Logistic回归找出其独立影响因素并绘制列线图,最后采用受试者工作曲线、校准曲线、临床决策曲线、临床影响曲线对该预测模型进行区分度与准确度及临床应用效能验证。结果与结论:①单因素分析结果显示,年龄、体质量指数、前向运动率、精子总活率、精子浓度、精子形态学、肾阳虚衰证、湿热下注证、肾精不足证为引发精子DFI异常增高的影响因子(P<0.05);②通过LASSO回归进一步筛选出的最佳匹配因素为年龄、体质量指数、精子总活率、精子浓度、精子形态学、肾阳虚衰证、湿热下注证、肾精不足证(P<0.05);③多因素向前逐步Logistic回归结果显示年龄、体质量指数、精子浓度、精子总活率、湿热下注证、肾阳虚衰证共6项为引发精子DFI异常增高的独立影响因素;④受试者工作曲线显示,模型组曲线下面积为0.760(0.713,0.806),验证组曲线下面积为0.745(0.714,0.776),说明该预测模型具有较好的区分度;⑤校准曲线平均绝对误差0.040,Hosmer-Lemeshow检验P>0.05,表明该模型预测发生精子DFI异常增高的概率与实际发生精子DFI异常增高的概率无显著统计学差异,证实该模型具有较好的准确度;⑥临床决策曲线与临床影响曲线显示,模型组与验证组分别在阈概率值为0.08-0.84与0.09-0.78时具有临床最大净获益,且在该阈概率范围内具有较好的临床应用效能;⑦结果表明,年龄、体质量指数、精子浓度、精子总活率、湿热下注证、肾阳虚衰证为引发精子DFI异常增高的独立影响因素,通过其构建的临床预测模型列线图具有较好的临床预测价值与临床应用效能,可为临床全面评估精液质量、预后与干预及个体化医疗服务提供依据。 展开更多
关键词 精子dna碎片 精子dna完整性 中医证候 精子dna碎片指数 预测模型
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DNA Barcodes in Fig Cultivars (Ficus carica L.) Using ITS Regions of Ribosomal DNA, the psbA-trnH Spacer and the matK Coding Sequence 被引量:1
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作者 Carlos Castro Alejandro Hernandez +1 位作者 Luis Alvarado Dora Flores 《American Journal of Plant Sciences》 2015年第1期95-102,共8页
Molecular markers provide a useful method for genotype characterization and allow a high precision determination of the genetic relationship between cultivars and varieties. A system based on DNA sequences—which is k... Molecular markers provide a useful method for genotype characterization and allow a high precision determination of the genetic relationship between cultivars and varieties. A system based on DNA sequences—which is known as DNA barcoding—will choose one or several standard loci which can be sequenced and compared to differentiate between species. In this research, the ITS, matK, and trnH-psbA sequences were evaluated for the molecular identification of seven F. carica genotypes, generating complete sequences for the first two loci, but unable to produce bidirectional sequences by using the trnH-psbA sequence. The ITS sequence presented the highest variation rates, while the phylogeny constructed with the matK sequence obtained the highest percentage of solved monophyletic groups. Through Pearson’s correlation analysis, it was possible to determine the existence of a significant correlation between the ITS region and psbA-trnH, and the matK and psbA-trnH sequences, but not between ITS and matK. The phylogenies constructed with the ITS + matK barcodes and ITS + matK + psbA-trnH presented the highest percentage for resolution. However, considering the cost efficiency and the facilitated recovery by using PCR, the matK + ITS combination is recommended. 展开更多
关键词 FICUS CARICA dna BARCODES ITS PSBA-TRNH MATK
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Phylogenetic analysis of Pectinidae (Bivalvia) based on the ribosomal DNA internal transcribed spacer region
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作者 HUANG Xiaoting BI Ke HU Jingjie HU Xiaoli BAO Zhenmin 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2007年第6期83-90,共8页
The ribosomal DNA internal transcribed spacer (ITS) region is a useful genomic region for understanding evolutionary and genetic relationships. In the current study, the molecular phylogenetic analysis of Pectinidae... The ribosomal DNA internal transcribed spacer (ITS) region is a useful genomic region for understanding evolutionary and genetic relationships. In the current study, the molecular phylogenetic analysis of Pectinidae ( Mollusca: Bivalvia) was performed using the nucleotide sequences of the nuclear ITS region in nine species of this family. The sequences were obtained from the scallop species Argopecten irradians, Mizuhopecten yessoensis, Amusium pleuronectes and Mimachlamys nobilis, and compared with the published sequences of Aequipecten opercularis, Chlamys farreri, C. distorta, M. varia, Pecten maximus, and an outgroup species Perna viridis. The molecular phylogenetic tree was constructed by the neighbor-joining and maximum parsimony methods. Phylogenetic analysis based on ITS1, ITS2, or their combination always yielded trees of similar topology. The results support the morphological classifications of bivalve and are nearly consistent with classification of two subfamilies (Chlamydinae and Pectininae) formulated by Waller. However, A. irradians, together with A. opercularis made up of genera Amusium, evidences that they may belong to the subfamily Pectinidae. The data are incompatible with the conclusion of Waller who placed them in Chlamydinae by morphological characteristics. These results provide new insights into the evolutionary relationships among scallop species and contribute to the improvement of existing classification systems. 展开更多
关键词 BIVALVE PECTINIDAE ribosomal dna ITS PHYLOGENY
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不同DNA条形码在微口线虫属形态相近物种分类上的应用
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作者 周仁桂 郭玉清 +1 位作者 朱慧兰 施宜佳 《中国海洋大学学报(自然科学版)》 CAS CSCD 北大核心 2024年第8期52-62,共11页
为建立和完善海洋线虫相近物种的DNA条形码鉴定方法,本研究以深圳福田红树林湿地自由生活的海洋线虫优势属微口线虫属(Terschellingia)为研究对象,在形态分类鉴定基础上,将DNA条形码技术引入海洋线虫形态相似物种的鉴定,研究线粒体细胞... 为建立和完善海洋线虫相近物种的DNA条形码鉴定方法,本研究以深圳福田红树林湿地自由生活的海洋线虫优势属微口线虫属(Terschellingia)为研究对象,在形态分类鉴定基础上,将DNA条形码技术引入海洋线虫形态相似物种的鉴定,研究线粒体细胞色素氧化酶第一亚基(COⅠ)基因、18S核糖体RNA基因(18S rDNA)和28S rDNA三种基因序列片段的物种分类效果。研究共鉴定出微口线虫属4个不同的形态学种,获得其中3个种的DNA序列。18S rDNA及28S rDNA两种条形码所构建的发育树支持将本属划分成6个类群;Kimura 2 parameter(K2P)种内和种间阈值分别为18S rDNA的0%~2.5%和0.4%~13.7%,28S rDNA的0%和20.5%~84.6%。18S rDNA的MN18F-Nem_18S_R引物对所扩增的序列最适合作为微口线虫属种类鉴定的DNA条形码,并可用于区分物种复合体。28S rDNA序列虽然能成功扩增,但扩增效率相对较低;COⅠ基因片段无法在所有物种中成功扩增,推测现有引物可能不适合用于本属序列的提取。研究结果表明,DNA条形码可以用于自由生活海洋线虫形态相似物种的识别,但不同的单基因片段对相同物种的鉴定结果有明显差异。 展开更多
关键词 海洋线虫 微口线虫属 dna条形码 18S rdna 28S rdna
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Application of the first internal transcribed spacer(ITS-1)of ribosomal DNA as a molecular marker to population analysis in farrer's scallop Chlamys farreri 被引量:1
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作者 YU Ziniu WEI Xiaohua +1 位作者 KONG Xiaoyu YU Shanshan 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2007年第1期93-100,共8页
Sequence variation of the first internal transcribed spacer of ribosomal DNA ( ITS - 1 ) was examined and its application to the study of genetic variation was explored in four populations of farter' s scallop Chla... Sequence variation of the first internal transcribed spacer of ribosomal DNA ( ITS - 1 ) was examined and its application to the study of genetic variation was explored in four populations of farter' s scallop Chlamys farreri. ITS - 1 fragments, with a length of about 300 bp,of 78 individuals collected from Dalian, Qingdao, Yantai in China and Korea respectively were amplified via PCR, cloned and sequenced. Intra-genomic variation was examined by sequencing several clones of single individuals. Alignment and polymorphism analysis detected 44 haplotypes and 50 polymorphic sites which consist of 30 substitutions and 20 indels, indicating a high level of polymorphisms. Sequence analysis also showed a very low level of intra-individual variation. All these features validated the feasibility of application of ITS - 1 fragment to population analysis. Polymorphism analysis showed that the Korea sample has the richest genetic variation, followed by Yantai and Qingdao samples. AMOVA (analysis of molecular variance) showed that the majority (96.26%) of genetic variation was distributed within populations and 3.74% resulted from among populations, but with P 〈 0.05 ( = 0.042), indicating that the populations in this study have significant divergence. This output was basically concordant with the result arising from RAPD data and different from that from mitochondrial 16S rDNA sequence data. Discussion on this inconsistency was made accordingly. 展开更多
关键词 Chlamys farreri farrer' s scallop internal transcribed spacer ITS - 1 dna sequence genetic variation
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“DNA粗提取和鉴定”实验设计与改进
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作者 张晓娟 《生物学教学》 北大核心 2024年第2期40-42,共3页
对DNA粗提取与鉴定实验进行优化,探究植物组织的多种破碎方法对DNA粗提取的影响,并用氯仿等有机物对DNA粗提取物进一步纯化,分析DNA未纯化与纯化后的纯度差异。结果显示,相较于破壁机破碎、加液氮研钵研磨以及玻璃匀浆器研磨,不添加液... 对DNA粗提取与鉴定实验进行优化,探究植物组织的多种破碎方法对DNA粗提取的影响,并用氯仿等有机物对DNA粗提取物进一步纯化,分析DNA未纯化与纯化后的纯度差异。结果显示,相较于破壁机破碎、加液氮研钵研磨以及玻璃匀浆器研磨,不添加液氮用研钵研磨效果更好。DNA粗提液经纯化后纯度显著提高,蛋白质及盐类等污染明显减少。 展开更多
关键词 dna的粗提取 实验改进 dna纯化 高中生物学
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利用基于Python/RGB模块的DNA电泳图像分析方法检测绵羊血浆中羊源性成分
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作者 曹诗林 张春鸿 +12 位作者 赖昕珏 袁志涛 郝锦亨 陈慧 马俊炜 李鑫尧 余洁婷 罗佳伟 陈胤熹 郑少鹏 郑焜文 林小茹 陈宛涓 《现代食品科技》 CAS 北大核心 2024年第6期252-259,共8页
该文探究了运用Python处理食品中DNA分子量与含量测定的新方法,建立了DNA凝胶图像分析方法。将不同分子量的DNA Marker与DNA标准样品进行琼脂糖凝胶电泳并拍照,利用自行开发Python程序分析凝胶图,对图像进行灰度图转换、高斯模糊、图像... 该文探究了运用Python处理食品中DNA分子量与含量测定的新方法,建立了DNA凝胶图像分析方法。将不同分子量的DNA Marker与DNA标准样品进行琼脂糖凝胶电泳并拍照,利用自行开发Python程序分析凝胶图,对图像进行灰度图转换、高斯模糊、图像阈值化、轮廓检测的图像优化步骤,探究了轮廓平均值法、轮廓中线法、全局数据平均法、全局数据积分法反映出DNA浓度与RGB数值间的线性关系,选取最优处理方法,通过读取像素迁移距离、RGB-灰度、RGB-向量、RGB-亮度进行DNA分子量与含量的测定实验,建立一种基于Python/RGB色彩体系的DNA凝胶电泳中分子量与含量的分析方法。检测结果误差较小,证明了Python/RGB的DNA分子量与含量分析方法的可行性,同时将该文所构建的凝胶图像分析方法应用于绵羊血浆中羊源性成分检测,结果显示所得目的蛋白为296 bp,而用DNA检测法得出样品中片段大小为294 bp,误差为0.99%,有望构建一种肉类源性成分检测的新方法。 展开更多
关键词 dna凝胶电泳 dna分子量 dna含量 PYTHON
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Molecular Characterization of Indian Species of Steinernema (Nematoda: Steinernematidae) Based on Restriction Fragment Length Polymorphism Profile of Internal Transcribed Spacer Region of Ribosomal DNA
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作者 S. Kumar A. Yadav S. Ganguly 《Journal of Agricultural Science and Technology(A)》 2011年第3X期368-374,共7页
关键词 限制性片段长度多态性 内转录间隔区 核糖体dna 分子鉴定 印度 限制性内切酶 线虫 物种
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Genetic characterization of far eastern species of the genus <i>Crepidostomum</i>(Trematoda: Allocreadiidae) by means of 28S ribosomal DNA sequences
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作者 Dmitry M. Atopkin Marina B. Shedko 《Advances in Bioscience and Biotechnology》 2014年第3期209-215,共7页
Genetic divergence and phylogenetic relationships of four species of the genus Crepidostomum Braun, 1900 sensu Caira, Bogea (2005) were revealed using partial sequences of 28S ribosomal RNA gene. Genetic divergence be... Genetic divergence and phylogenetic relationships of four species of the genus Crepidostomum Braun, 1900 sensu Caira, Bogea (2005) were revealed using partial sequences of 28S ribosomal RNA gene. Genetic divergence between C. cf. farionis (Muller, 1784) and C. nemachilus Krotov, 1959 was 3.1%, which corresponds to the mean value of interspecific divergence between Crepidostomum species. These two species, therefore, can be recognized as bonafide species. However, we found no genetic differences between 28S rRNA gene sequences of C. nemachilus and C. cf. metoecus Braun,1900 inspite of considerable morphological and ecological differences. Maximal values of genetic p-distances were revealed between C. cf. auriculatum Wedl, 1857 and C. cf. farionis. Phylogenetic relationships of Crepidostomum spp. for which sequence data are available, along with species in other related genera (Bunodera Railliet, 1896 and Allocreadium Loss, 1900) showed a paraphyly of the genus Crepidostomum. Considerable differentiation of C. cf. auriculatum from other Crepidostomum species was revealed, which may reflect the original description of this species in a separate genus Acrolichanus Ward, 1917. Our results are consistent with the conventional systematics that places the four genera (Crepidostomum, Bunodera, Megalogonia and Allocreadium) within the same family. 展开更多
关键词 dna Sequencing Crepidostomum Acrolichanus TREMATODA DIGENEA Phylognetic Relationships
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Identification of Powdery Mildew Pathogen and Ribosomal DNA-ITS Sequence Analysis on Melon 被引量:2
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作者 Wang Xue-zheng Xu Bing-yin +3 位作者 Wang Ping Luan Fei-shi Ma Hong-yan Ma Ying-yuan 《Journal of Northeast Agricultural University(English Edition)》 CAS 2013年第4期10-18,F0003,共10页
Identification of powdery mildew pathogens on melon(Cucumis melo) is important for melon breeding and diseaseresistant germplasm selection. In this study, a powdery mildew pathogen that infected melon plants in Heil... Identification of powdery mildew pathogens on melon(Cucumis melo) is important for melon breeding and diseaseresistant germplasm selection. In this study, a powdery mildew pathogen that infected melon plants in Heilongjiang Province, China, was investigated in terms of host identification, morphological characteristics and phylogenetic relationships. The morphological characteristics of the pathogen were observed at five phases in the life cycle: germinating conidia, primary germ tube, hyphae, conidiophores, and colonization. The conidia were elliptical, colorless, catenulate, and the average length was 29.07 μm and average width was 17.82 μm. One ascus and eight ascospores were produced. DNA was extracted from 0.01 g conidiophores from a strain of powdery mildew pathogen that infected melon. ITS ribosomal DNA region(524 bp) was amplified with the universal ITS1 and ITS4 primers. The nucleotide sequence showed 100% similarity with ITS sequences for three Podosphaera fusca strains obtained from the GenBank database. The identity of the pathogen was confirmed as Sphaerotheca fuliginea. International standard differential hosts were used to identify S. fuliginea strain as 2F race. These results supported the notion that Podosphaera fusca was a synonym of S. fuliginea. 展开更多
关键词 PATHOGEN Sphaerotheca fuliginear dna-ITS morphological identification host identification
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DNA聚合酶θ:易错的多功能DNA末端修复分子 被引量:1
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作者 王瑶 陈国江 +3 位作者 冯健男 石艳春 王晶 郑源强 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2024年第3期493-503,共11页
DNA聚合酶θ(DNA polymerase theta,Polθ)是一种广泛存在于动植物中的DNA修复酶。它在选择性末端连接(alternative end-joining,Alt-EJ)途径中发挥着关键作用,常参与DNA双链断裂(DNA double-strand breaks,DSB)损伤修复。在正常生理状... DNA聚合酶θ(DNA polymerase theta,Polθ)是一种广泛存在于动植物中的DNA修复酶。它在选择性末端连接(alternative end-joining,Alt-EJ)途径中发挥着关键作用,常参与DNA双链断裂(DNA double-strand breaks,DSB)损伤修复。在正常生理状态下,Polθ主要调控基因组稳定性。然而,在恶性肿瘤发生时,Polθ表现出异常高表达水平,并参与调控肿瘤细胞的恶性转变过程。研究表明,抑制Polθ活性可导致同源重组(homologous recombination,HR)缺陷的肿瘤细胞发生合成致死(synthetic lethality,SL)。因此,已经开发出多种针对Polθ的小分子抑制剂,可与其他化疗药物联合使用以抑制恶性肿瘤的发展。此外,敲除或抑制Polθ活性还能增加HR修复效率,从而提高外源基因靶向整合效果。本文综述了Polθ及其介导的Alt-EJ修复机制在生物学功能方面的最新研究进展,为靶向Polθ在肿瘤治疗和基因编辑方面的应用提供理论基础。 展开更多
关键词 dna聚合酶θ dna双链断裂修复 基因组稳定性 肿瘤抑制 靶向整合
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Fluorescence-based Multiplex PCR-Single Strand Conformation Polymorphism (SSCP) Analysis of 16S Ribosomal DNA Using Capillary Electrophoresis 被引量:4
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作者 高鹏 韩英 +6 位作者 许国旺 赵春霞 戴兵 李萍 王运铎 温杰 徐维家 《Journal of Microbiology and Immunology》 2004年第2期93-98,共6页
The rRNA genetic locus is found in all prokaryotic organisms, and is highly conservative, although its relatively stable variations are found frequently in different bacteria. The utility of this locus as a taxonomic ... The rRNA genetic locus is found in all prokaryotic organisms, and is highly conservative, although its relatively stable variations are found frequently in different bacteria. The utility of this locus as a taxonomic and phylogenetic tool has been reported widely. This study, aimed at 16S rRNA gene (16S rDNA) and with the help of biomolecular methods, attempted to achieve the goal of rapid identification of common pathogens. In this study, 333 clinical isolated pathogenic bacteria were collected. Two pairs of primers were chosen and labeled with different fluorescent dyes and then used to amplify the genomic DNA extracted from bacteria. The PCR products were then detected by capillary electrophoresis-single strand conformation polymorphism (CE-SSCP). In order to pursue higher resolution and peak-separation effect, a high efficient separating medium, liner polyacrylamidedel (LPA), was put to use in this study. Finally, every bacteria colony generated distinct patterns from each other, which were easily to be used for identification. These results indicated that PCR-CE-SSCP was a rapid identification method for bacterial identification, with the aspects of high efficiency and high precision. Compared with traditional method, this technology is of great utility for clinical use especially for its high sensitivity. 展开更多
关键词 毛细电泳 细菌检测 检测方法 dna 荧光 PCR 病原体
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DNA甲基转移酶在结直肠癌发生发展中的作用研究
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作者 刘国芳 郑连生 +1 位作者 汤泊夫 邵国 《内蒙古医科大学学报》 2024年第2期184-187,共4页
目的 探讨DNA甲基转移酶在结直肠癌发生发展过程中发挥的作用。方法 选取2021年9月至2022年6月包头医学院第二附属医院结直肠癌患者的结直肠癌组织及癌旁组织。通过Real-time PCR和Western Blot对癌组织及癌旁组织中DNMT1、DNMT3A及DNM... 目的 探讨DNA甲基转移酶在结直肠癌发生发展过程中发挥的作用。方法 选取2021年9月至2022年6月包头医学院第二附属医院结直肠癌患者的结直肠癌组织及癌旁组织。通过Real-time PCR和Western Blot对癌组织及癌旁组织中DNMT1、DNMT3A及DNMT3B的m RNA和蛋白水平表达进行检测。结果 与癌旁组织相比,DNMT1、DNMT3A、DNMT3B在结直肠癌中m RNA表达水平及蛋白表达水平均显著上升,差异有统计学意义(P<0.05)。结论 DNA甲基转移酶的过表达促进了结直肠癌发生发展。 展开更多
关键词 结直肠癌 dna甲基转移酶1 dna甲基转移酶3A dna甲基转移酶酶3B
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