Seeds of Elaeagnus mollis(Elaeagnaceae) produce an edible oil and contain more vitamin E(Ve) than major oil-seed crops. Despite its economic value, there is no information on its genome sequence. Here, we used the Ill...Seeds of Elaeagnus mollis(Elaeagnaceae) produce an edible oil and contain more vitamin E(Ve) than major oil-seed crops. Despite its economic value, there is no information on its genome sequence. Here, we used the Illumina platform to determine the seed transcriptome of E.mollis to identify the genes related to Ve biosynthesis and potential simple sequence repeat(SSR) markers. In total, 100,999 unigenes were obtained with an average length of 605 bp and N50 of 985 bp. Of these unigenes,52,256(51.7%) were annotated in at least one public database(NT, NR, PFAM, Swiss Prot, KOG, KO, and GO)in searches using blastn/x. The unigene annotation identified 15 unigenes encoding six enzymes(GGR, HPPD,HPT/VTE2, MPBQ-MT/VTE3, TC/VTE1, and c-TMT/VTE4) putatively involved in Ve biosynthesis. In addition,16,810 SSRs distributed in 14,057 unigenes were mined.Of these, 2820, 583, and 3423 SSRs were located in the 50–UTR, coding sequence(CDS), and 30–UTR regions,respectively, while the remaining 9984 SSRs had undetermined physical locations. The largest group of repeat motifs comprised mononucleotide repeats(70.76%), followed by dinucleotide(15.59%) and trinucleotide(12.10%)repeats. AG/CT(8.69%) and AAG/CTT(4.15%) were the main dinucleotide and trinucleotide repeats, respectively.Furthermore, 9597 SSR-specific primer pairs were designed. Among 100 primer pairs selected randomly to determine their usefulness, 53 proved to be efficient. To the our best of knowledge, this work is the first study of the E. mollis transcriptome and constitutes valuable genomics data for future genetic engineering studies to alter the amount of Ve. The identified potential EST-SSR markers can be used for population genetics studies and assistedbreeding of E. mollis.展开更多
The current research progress in China shows that the tree species of rhizobia that have been found are mainly trees of 11 genera in Papilionaceae,Elaeagnaceae and Mimosaceae,and the rhizobia are mainlyα-rhizobia,whi...The current research progress in China shows that the tree species of rhizobia that have been found are mainly trees of 11 genera in Papilionaceae,Elaeagnaceae and Mimosaceae,and the rhizobia are mainlyα-rhizobia,which come from multiple genera.Temperature,pH value,NaCl content and antibiotics all affect the growth of tree rhizobia;and different species of rhizobia have different stress resistance,which is related to their living environment.Rhizobium inoculation can promote plant height,biomass,root-to-shoot ratio,and root architecture of trees.We discussed and analyzed the development history and application status of rhizobia research,and prospected their future development directions.In the future,tree rhizobia will surely be used as a means of production to promote efficient agricultural production and sustainable agricultural systems.展开更多
基金supported by the National Natural Science Foundation of China(31600549)Doctor Faculty Inaugurating Project of Northwest A&F University(2452015296)。
文摘Seeds of Elaeagnus mollis(Elaeagnaceae) produce an edible oil and contain more vitamin E(Ve) than major oil-seed crops. Despite its economic value, there is no information on its genome sequence. Here, we used the Illumina platform to determine the seed transcriptome of E.mollis to identify the genes related to Ve biosynthesis and potential simple sequence repeat(SSR) markers. In total, 100,999 unigenes were obtained with an average length of 605 bp and N50 of 985 bp. Of these unigenes,52,256(51.7%) were annotated in at least one public database(NT, NR, PFAM, Swiss Prot, KOG, KO, and GO)in searches using blastn/x. The unigene annotation identified 15 unigenes encoding six enzymes(GGR, HPPD,HPT/VTE2, MPBQ-MT/VTE3, TC/VTE1, and c-TMT/VTE4) putatively involved in Ve biosynthesis. In addition,16,810 SSRs distributed in 14,057 unigenes were mined.Of these, 2820, 583, and 3423 SSRs were located in the 50–UTR, coding sequence(CDS), and 30–UTR regions,respectively, while the remaining 9984 SSRs had undetermined physical locations. The largest group of repeat motifs comprised mononucleotide repeats(70.76%), followed by dinucleotide(15.59%) and trinucleotide(12.10%)repeats. AG/CT(8.69%) and AAG/CTT(4.15%) were the main dinucleotide and trinucleotide repeats, respectively.Furthermore, 9597 SSR-specific primer pairs were designed. Among 100 primer pairs selected randomly to determine their usefulness, 53 proved to be efficient. To the our best of knowledge, this work is the first study of the E. mollis transcriptome and constitutes valuable genomics data for future genetic engineering studies to alter the amount of Ve. The identified potential EST-SSR markers can be used for population genetics studies and assistedbreeding of E. mollis.
基金National Natural Science Foundation of China(31270674)National Project of Special Fund for Undergraduate Science and Technology Innovation Cultivation in Guangdong Province(202010580009)+1 种基金Provincial Project of Special Fund for Undergraduate Science and Technology Innovation Cultivation in Guangdong Province(S202010580042)"Climbing Program"of Special Fund for Undergraduate Science and Technology Innovation Cultivation in Guangdong Province(pdjh2020b0640).
文摘The current research progress in China shows that the tree species of rhizobia that have been found are mainly trees of 11 genera in Papilionaceae,Elaeagnaceae and Mimosaceae,and the rhizobia are mainlyα-rhizobia,which come from multiple genera.Temperature,pH value,NaCl content and antibiotics all affect the growth of tree rhizobia;and different species of rhizobia have different stress resistance,which is related to their living environment.Rhizobium inoculation can promote plant height,biomass,root-to-shoot ratio,and root architecture of trees.We discussed and analyzed the development history and application status of rhizobia research,and prospected their future development directions.In the future,tree rhizobia will surely be used as a means of production to promote efficient agricultural production and sustainable agricultural systems.