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铁氧化菌菌株EEELCW01的基因组分析及砷转化功能
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作者 熊潇然 邹奇 +2 位作者 吴川 夏礼兵 潘炜松 《湖南农业大学学报(自然科学版)》 CAS CSCD 北大核心 2023年第4期428-435,共8页
以从砷污染农田土壤中分离的1株铁氧化细菌EEELCW01为研究对象,对该菌进行全基因组分析,通过GO、KEGG、COG等数据库比对,预测该菌砷相关基因的功能;采用水培试验,验证该菌的砷转化能力。结果表明:菌株EEELCW01基因组大小为4714242 bp,具... 以从砷污染农田土壤中分离的1株铁氧化细菌EEELCW01为研究对象,对该菌进行全基因组分析,通过GO、KEGG、COG等数据库比对,预测该菌砷相关基因的功能;采用水培试验,验证该菌的砷转化能力。结果表明:菌株EEELCW01基因组大小为4714242 bp,具有2条大小分别为2065078 bp和2649164 bp的染色体,GC含量为55.99%,染色体上有4588个CDS,包含58个t RNA和12个r RNA;COG数据库注释表明该菌基因功能主要集中在氨基酸转运代谢、无机离子转运代谢等过程,GO数据库注释表明该菌主要包含膜组成部分、氧化还原过程和相关酶活性等功能,KEGG注释显示代谢相关的基因占比最高;菌株EEELCW01基因组中含有多种与砷代谢相关的基因(arsC、ars H、arsB、ars R、acr3、arr A、arxA和arsM);菌株EEELCW01将As(Ⅴ)还原为As(Ⅲ)的能力强,有氧条件下,3 d时还原率达40.1%。可见,可利用该菌株促进砷的生物还原,并联合砷超富集植物进行环境砷污染修复。 展开更多
关键词 铁氧化菌 砷转化 基因组分析 功能注释
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Three-dimensional structures of virulence proteins of Legionella establish targets for new antibacterials
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作者 Guido Hansen Rolf Hilgenfeld 《微生物与感染》 2012年第1期2-12,共11页
Legionella pneumophila,the causative agent of Legionnaires' disease,has been recognized as a major health problem responsible for an estimated number of 15 000-30 000 cases of severe pneumonia per year in Germany ... Legionella pneumophila,the causative agent of Legionnaires' disease,has been recognized as a major health problem responsible for an estimated number of 15 000-30 000 cases of severe pneumonia per year in Germany alone.Despite of the high clinical relevance,many aspects of the intracellular life cycle of Legionella,especially details on interactions with host cells,are not well understood.Structural information on virulence proteins helps unravel basal pathogenicity mechanisms and is a prerequisite for the rational development of effective drug molecules.Here we discuss structures of three important virulence proteins of Legionella that have been determined in our laboratory.The structure of the macrophage infectivity potentiator(Mip) protein of Legionella pneumophila is the first of a novel subgroup within the family of FK506-binding protein(FKBP) peptidyl-prolyl cis/trans isomerases.On the basis of the Mip structure,promising antibacterial agents are being designed.Recently,structures of two equally exciting Legionella proteins have been reported.The ferrous iron transport protein FeoB is a transmembrane protein responsible for Fe2+ aquisition after entry of the pathogen into the host cell.The structure of the cytoplasmic domain of FeoB provides insights into the family of prokaryotic G proteins and allows a detailed comparison with structures of related FeoBs.Furthermore,the characterization of DegQ,a periplasmatic chaperone-protease involved in protein quality control represents an intriguing example of how enzymatic activity is regulated by oligomerization as well as by an intrinsic loop activation cascade,depending on subtle conformational rearrangements. 展开更多
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Characterization of Fe-S minerals influenced by buried ancient woods in the intertidal zone,East China Sea 被引量:1
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作者 YUAN LinXi SUN LiGuang +3 位作者 FORTIN Danielle WANG YuHong WU ZiJun YIN XueBin 《Chinese Science Bulletin》 SCIE EI CAS 2009年第11期1931-1940,共10页
An ancient wood layer dated at about 5600 cal. a BP by AMS14C dating was discovered in the intertidal zone, East China Sea. Samples affected by ancient woods, including fresh coast bedrock, weathering bedrock, seepage... An ancient wood layer dated at about 5600 cal. a BP by AMS14C dating was discovered in the intertidal zone, East China Sea. Samples affected by ancient woods, including fresh coast bedrock, weathering bedrock, seepage water from coast, seepage water from ancient wood layer, intertidal seawater, fresh water, beach mud, ancient wood barks and ancient peat, were collected for geochemical analysis. The beach mud and the bacteriogenic iron oxides (BIOS) in coastal seepage water were analyzed by min-eralogical and high-resolution transmission electron microscopy (HRTEM)-selected area electron dif-fraction (SAED) analysis. Inorganic sulfur compositions and δ34S of the ancient peat and the beach mud were determined. The results showed that Fe, Mn, S (SO42-) were enriched in the intertidal area at different levels, very likely caused by fermentation of ancient woods. The presence of abundant iron-oxidizing bacteria (FeOB) and sulfate-reducing bacteria (SRB) in this intertidal zone was confirmed by HRTEM-SAED observation, and these bacteria were involved in Fe-S cycle to induce extracellular biomineralization. The negative δ34SV-CDT (-2.9‰) likely indicated the biogenic origin of iron-sulfide minerals in the beach mud at high sulfate reduction rate (SRR). These findings are helpful for under-standing the biogeochemical Fe-S cycle and biomineralization process at high organic matter deposition rate and high SRR in the intertidal zone, estuary, or near shoreline. 展开更多
关键词 东中国海 氧化铁 潮间带 无机硫 树林 海洋法 选区电子衍射 透射电子显微镜
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