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THE DETECTION OF MDR1 GENE EXPRESSION USING FLUOROGENIC PROBE QUANTITATIVE RT-PCR METHOD
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作者 高劲松 马刚 +3 位作者 仝明 陈佩毅 王传华 何蕴韶 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2001年第2期96-100,共5页
Objective: To establish a fluoregenic probe quantitative RT-PCR (FQ-RT-PCR) method for detection of the expression of MDR1 gene in tumor cells and to investigate the expression of MDR1 gene in patients with lung cance... Objective: To establish a fluoregenic probe quantitative RT-PCR (FQ-RT-PCR) method for detection of the expression of MDR1 gene in tumor cells and to investigate the expression of MDR1 gene in patients with lung cancer. Methods: The fluorogenic quantitative RT-PCR method for detection of the expression of MDR1 gene was established. K562/ADM and K562 cell lines or 45 tumor tissues from patients with lung cancer were examined on PE Applied Biosystems 7700 Sequence Detection machine. Results: the average levels of MDR1 gene expression in K562/ADM cells and K562 cells were (6.86±0.65)× 107 copies/μg RNA and (8.49±0.67)×105 copies/μg RNA, respectively. The former was 80.8 times greater than the latter. Each sample was measured 10 times and the coefficient variation (CV) was 9.5% and 7.9%, respectively. Various levels of MDR1 gene expression were detected in 12 of 45 patients with lung cancer. Conclusion: Quantitative detection of MDR1 gene expression in tumor cells was achieved by using FQ-RT-PCR. FQ-RT-PCR is an accurate, and sensitive method and easy to perform. Using this method, low levels of MDR1 gene expression could be detected in 24% of the patients with lung cancer. 展开更多
关键词 fluorogenic quantitative rt-pcr/MDR1 Expression/Real time DETECTION
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Identification of normalization factors for quantitative realtime RT-PCR analysis of gene expression in Pacific abalone Haliotis discus hannai 被引量:1
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作者 邱礽 孙铂光 +2 位作者 房沙沙 孙黎 刘晓 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2013年第2期421-430,共10页
Quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) is widely used in studies of gene expression. In most of these studies, housekeeping genes are used as internal references without val... Quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) is widely used in studies of gene expression. In most of these studies, housekeeping genes are used as internal references without validation. To identify appropriate reference genes for qRT-PCR in Pacific abalone Haliotis discus hannai, we examined the transcription stability of six housekeeping genes in abalone tissues in the presence and absence of bacterial infection. For this purpose, abalone were infected with the bacterial pathogen Fibrio anguillarum for 12 h and 48 h. The mRNA levels of the housekeeping genes in five tissues (digestive glands, foot muscle, gill, hemocyte, and mantle) were determined by qRT-PCR. The PCR data was subsequently analyzed with the geNorm and NormFinder algorithms. The results show that in the absence of bacterial infection, elongation factor-l-alpha and beta-actin were the most stably expressed genes in all tissues, and thus are suitable as cross-tissue type normalization factors. However, we did not identify any universal reference genes post infection because the most stable genes varied between tissue types. Furthermore, for most tissues, the optimal reference genes identified by both algorithms at 12 h and 48 h post-infection differed. These results indicate that bacterial infection induced significant changes in the expression of abalone housekeeping genes in a manner that is dependent on tissue type and duration of infection. As a result, different normalization factors must be used for different tissues at different infection points. 展开更多
关键词 Haliotis discus hannai housekeeping gene normalization factor quantitative real time rt-pcr reference gene
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Detection of Survivin mRNA in nasopharyngeal carcinoma by real-time fluorescence quantitative RT-PCR 被引量:1
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作者 Shengmiao Fu Junhong Cai +5 位作者 Zhihua Tu Yutian Wang Liqun Deng Zhu Liang Zhenqun Lin Xuanju Gong 《The Chinese-German Journal of Clinical Oncology》 CAS 2008年第9期523-526,共4页
Objective: To establish the method of real time fluorescence quantitative RT-PCR for detecting the expression of Survivin mRNA in nasopharyngeat carcinoma (NPC) tissues. Methods: The total RNA was extracted from N... Objective: To establish the method of real time fluorescence quantitative RT-PCR for detecting the expression of Survivin mRNA in nasopharyngeat carcinoma (NPC) tissues. Methods: The total RNA was extracted from NPC cell line CNE-2 and tissues with Trizol and then been transcribed reversely to cDNA, a method of real time fluorescence quantitative RT-PCR for detecting the expression of Survivin mRNA in NPC tissues had been established, in which chronic nasopharyn-gitis patients' nasopharynx tissues treated as control group. Results: The expression of Survivin mRNA all could be detected either in CNE-2 cells, NPC tissues or in chronic nasopharyngitis patients' nasopharynx tissues, and there was higher the expression level of Survivin mRNA in NPC tissues than which in chronic nasopharyngitis patients' nasopharynx tissues, the difference was significant (P 〈 0.01). The expression of Survivin mRNA could be detected both in stage Ⅰ + Ⅱ and stage Ⅲ + Ⅳ NPC, and there was no significant difference in relative quantifications of gene expression between these two groups (P 〉 0.05). There was no relationship between Survivin mRNA expression and age and sex of NPC patients (P 〉 0.05). Conclusion: Real time fluorescence quantitative RT-PCR is a rapid, effective and high sensitive method for detecting the expression of Survivin mRNA in NPC tissues. The overexpression of Survivin mRNA may play some roles in pathogenesis of NPC. 展开更多
关键词 nasopharyngeal carcinoma (NPC) real-time fluorescence quantitative rt-pcr gene expression apoptosisinhibitor Survivin
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Detection and clinical significance of multidrug resistance-1 mRNA in bone marrow cells in children with acute lymphoblastic leukemia by real-time fluorescence quantitative RT-PCR 被引量:1
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作者 Yuan Lu Runming Jin +3 位作者 Kun Yang Lirong Sun Yan Xia Xiuying Pang 《Journal of Nanjing Medical University》 2008年第3期153-158,共6页
Objective: Multidrug resistance(MDR) is one of the most important reasons for treatment failure and recurrence of acute leukemia. Its manifestations are different in children with acute lymphoblastic leukemia(ALL... Objective: Multidrug resistance(MDR) is one of the most important reasons for treatment failure and recurrence of acute leukemia. Its manifestations are different in children with acute lymphoblastic leukemia(ALL) which may be due to different detection methods. This study was to detect the expression of MDR1 mRNA in bone marrow cells of children with ALL by real-time fluorescence- quantitative reverse transcription polymerase-chain reaction(FQ-RT-PCR), and combine minimal residual desease(MRD) detection by flow cytometry(FCM) and to study their relationship with treatment response and prognosis of ALL. Methods:The MDR1 mRNA levels in bone marrow cells from 67 children with ALL[28 had newly diagnosed disease, 27 had achieved complete remission(CR), 12 recurrent] and 22 children without leukemia were detected by FQ-RT-PCR. MRD was detected by FCM. The patients were observed for 9-101 months, with a median of 64 months. Results:Standard curves of human MDR1 and GAPDH genes were constructed successfully. MDR1 mRNA was detected in all children with a positive rate of 100%. The mRNA level of MDR1 was similar among the newly diagnosed ALL group, CR group, and control group(P 〉 0.05), but significantly higher in the recurrence group than that in newly diagnosed disease group and control group(0.50 ± 0.55 vs. 0.09 ± 0.26 and 0.12 ± 0.23, P〈 0.05). 54 ALL patients were followed up, and it was found that MDR1 mRNA level was significantly higher in ALL patients within 3 years duration than that of ALL patients with 3-6 years and over 6 years duration(0.63 ± 0.56 vs. 0.11 ± 0.12 and 0.04 ± 0.06, P〈 0.01). For the 28 children with newly diagnosed disease, the MDR1 mRNA level was similar between WBC 〉 50 ~ 109 group and WBC〈50 × 10^9 group(P〉 0.05). In the 33 CR patients, the MDR1 mRNA level was significantly higher in MRD〉10a group than that in MRD〈10a group(0.39 ± 0.47 vs. 0.03 ± 0.03, P 〈 0.05). Conclusion:The sensitivity and specificity of FQ-RT-PCR in detecting MDR1 mRNA in bone marrowy cells of children with ALL patients are high. MDR1 mRNA is expressed in children with and without leukemia. MDR1 mRNA is highly expressed in the CR ALL patients with high MRD, recurrence and short duration(within 3 years). Monitoring MRD and the MDR1 mRNA level might be helpful for individual treatment. 展开更多
关键词 LEUKEMIA CHILDREN multidrug resistance MDR1 gene minimal residual disease real-time fluorescence quantitative rt-pcr
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Synchronous Detection of DNA/RNA of Four Shrimp Viruses by Real-time Fluorescence Quantitative RT-PCR 被引量:1
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作者 Biao SHEN Zhongfa WANG +1 位作者 Xingjuan HU Songye GU 《Agricultural Biotechnology》 CAS 2014年第5期48-50,共3页
[ Objective] This study aimed to establish a simultaneous detection method of shrimp viruses by real-time fluorescence quantitative RT-PCR, to improve the efficiency of inspection and quarantine. [ Method] A novel rea... [ Objective] This study aimed to establish a simultaneous detection method of shrimp viruses by real-time fluorescence quantitative RT-PCR, to improve the efficiency of inspection and quarantine. [ Method] A novel real-time fluorescence quantitative RT-PCR assay was established and optimized for simultaneously detecting DNA/RNA of four shrimp viruses (WSSV, IHHNV, TSV and YHV ). [ Result] The optimized real-time fluorescence quantitative RT-PCR system gener- ated typical amplification curves with high amplification efficiencies (E = 1.06, 1.07, 0.92 and 0.92, respectively), good hnear relationship ( r = 1 ), uniform repeatability ( standard deviation = 0.05 - 0.46 ; variation coefficient = 0.26% - 1.62% ) and high sensitivity, exhibiting no significant differences compared with re- al-time fluorescence quantitative PCR (average error of Ct value = 0.04 -0.40; T = 0.53 -2.50; P 〉 0.05 ). The total detection time was about 1 h. [ Conclusion] The optimized real-time fluorescence quantitative RT-PCR system can be used for rapid detection of WSSV, IHHNV, TSV and YHV. 展开更多
关键词 Real-time fluorescence quantitative rt-pcr Shrimp viruses Synchronous amplification of DNA/RNA
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TaqMan real-time fluorescent quantitative RT-PCR in detection of macrophage inflammatory protein-2γ mRNA in myocarditis murine
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作者 杨佳荟 沈茜 《Journal of Medical Colleges of PLA(China)》 CAS 2003年第5期301-304,共4页
Objective: To study the role of macrophage inflammatory protein (MIP)-2γ in myocarditis pathogenesis in BALB/c mice. Methods: The relationship between the progression of Coxsarckie virus B3(CVB3) viral myocarditis an... Objective: To study the role of macrophage inflammatory protein (MIP)-2γ in myocarditis pathogenesis in BALB/c mice. Methods: The relationship between the progression of Coxsarckie virus B3(CVB3) viral myocarditis and experimental autoimmune myocarditis and MIP-2γ mRNA expression in mouse was studied by TaqMan real-time fluorescent quantitative RT-PCR. Results: MIP-2γ mRNA expression rose on 3 to 5 d after CVB3 infection, reached peak on 7 d, and returned to normal level until 14 d, which corresponded well with the disease course. The MIP-2γ mRNA expression level rose significantly on the day 18 d after immunization with porcine cardiac myosin, which was consistent with pathological examination. Conclusion: MIP-2γ may be involved in the pathogenesis of myocarditis. 展开更多
关键词 TAQMAN real-time fluorescent quantitative rt-pcr MYOCARDITIS MIP-2γ MRNA
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Analysis of photo inactivation damaged nucleic acid of VSV by means of quantitative RT-PCR
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《中国输血杂志》 CAS CSCD 2001年第S1期349-,共1页
关键词 Analysis of photo inactivation damaged nucleic acid of VSV by means of quantitative rt-pcr VSV ACID RT
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Quantitative comparison of the expression of myogenic regulatory factors in flounder(Paralichthys olivaceus) embryos and adult tissues 被引量:1
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作者 张玉青 谭训刚 +3 位作者 徐芃 孙威 徐永立 张培军 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2010年第2期248-253,共6页
MyoD, Myf5, and myogenin are myogenic regulatory factors that play important roles during myogenesis. It is thought that MyoD and Myf5 are required for myogenic determination, while myogenin is important for terminal ... MyoD, Myf5, and myogenin are myogenic regulatory factors that play important roles during myogenesis. It is thought that MyoD and Myf5 are required for myogenic determination, while myogenin is important for terminal differentiation and lineage maintenance. To better understand the function of myogenic regulatory factors in muscle development of flounder, an important economic fish in Asia, real-time quantitative RT-PCR was used to characterize the expression patterns of MyoD, Myf5, and myogenin at early stages of embryo development, and in different tissues of the adult flounder. The results show that, MyJ5 is the first gene to be expressed during the early stages of flounder development, followed by MyoD and myogenin. The expressions ofMyf5, MyoD, and myogenin at the early stages have a common characteristic: expression gradually increased to a peak level, and then gradually decreased to an extremely low level. In the adult flounder, the expression of the three genes in muscle is much higher than that in other tissues, indicating that they are important for muscle growth and maintenance of grown fish. During embryonic stages, the expression level of MyoD might serve an important role in the balance between muscle cell differentiation and proliferation. When the MyoD expression is over 30% of its highest level, the muscle cells enter the differentiation stage. 展开更多
关键词 Paralichthys olivaceus myogenic regulatory factors MYOGENESIS MUSCLE quantitative rt-pcr
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The quantitative expressions of lymphangiogenic factors and metastasis in human colorectal cancers 被引量:2
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作者 Jianyu He Yuanfang Lv 《The Chinese-German Journal of Clinical Oncology》 CAS 2011年第3期170-173,共4页
Objective: The purpose of this paper was to study the expression levels of newly described lymphatic endothelial markers – LYVE-1, Prox-1, podoplanin and 5’-nucleotidase, and their correlation with metastasis of hu... Objective: The purpose of this paper was to study the expression levels of newly described lymphatic endothelial markers – LYVE-1, Prox-1, podoplanin and 5’-nucleotidase, and their correlation with metastasis of human colorectal cancers. Methods: Tumor and corresponding tumor-side normal tissue samples were obtained from resected specimens immediately after operation. Expression level of each factor was determined by quantitative real-time PCR (RT-PCR) and Western blot technique. Results: Expression levels of lymphatic endothelial markers LYVE-1, Prox-1, podoplanin and 5’-nucleotidase were significantly different in tumor and tumor-side normal groups. Expression levels of Prox-1 and podoplanin were higher in patients with positive lymph node metastasis than those without metastasis. LYVE-1, but not 5’-nucleotidase expression level was higher in both cancer and normal groups. Conclusion: These results indicate that combined quantitative analysis of lymphangiogenic markers LYVE-1, Prox-1 and podoplanin in colorectal cancer specimens may be useful in predicting metastasis of colorectal cancer to regional lymph nodes. However, the role of 5’-nucleotidase in predicting metastasis of colorectal cancer still remains to be further analyzed. 展开更多
关键词 colorectal cancer lymphatic endothelial markers quantitative real-time PCR rt-pcr
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Quantitative analysis of a panel of gene expression in prostate cancer——with emphasis on NPY expression analysis 被引量:1
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作者 LIU Ai-jun FURUSATO Bungo +5 位作者 RAVINDRANATH Lakshmi CHEN Yong-mei SRIKANTAN Vasanta MCLEOD David G. PETROVICS Gyorgy SRIVASTAVA Shiv 《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》 SCIE CAS CSCD 2007年第12期853-859,共7页
Objective: To investigate molecular alterations associating with prostate carcinoma progression and potentially provide information toward more accurate prognosis/diagnosis. Methods: A set of laser captured microdis... Objective: To investigate molecular alterations associating with prostate carcinoma progression and potentially provide information toward more accurate prognosis/diagnosis. Methods: A set of laser captured microdissected (LCM) specimens from 300 prostate cancer (PCa) patients undergoing radical prostatectomy (RP) were defined. Ten patients representing "aggressive" PCa, and 10 representing "non-aggressive" PCa were selected based on prostate-specific antigen (PSA) recurrence, Gleason score, pathological stage and tumor cell differentiation, with matched patient age and race between the two groups. Normal and neoplastic prostate epithelial cells were collected with LCM from frozen tissue slides obtained from the RP specimens. The expressions of a panel of genes, including NPY, PTEN, AR, AMACR, DD3, and GSTP1, were measured by quantitative real-time RT-PCR (TaqMan), and correlation was analyzed with clinicopathological features. Results: The expressions of AMACR and DD3 were consistently up-regulated in cancer cells compared to benign prostate epithelial cells in all PCa patients, whereas GSTP1 expression was down regulated in each patient. NPY, PTEN and AR exhibited a striking difference in their expression patterns between aggressive and non-aggressive PCas (P=0.0203, 0.0284, and 0.0378, respectively, Wilcoxon rank sum test). The lower expression of NPY showed association with "aggressive" PCas based on a larger PCa patient cohort analysis (P=0.0037, univariate generalized linear model (GLM) analysis). Conclusion: Despite widely noted heterogeneous nature of PCa, gene expression alterations ofAM,4CR, DD3, and GSTP1 in LCM-derived PCa epithelial cells suggest for common underlying mechanisms in the initiation of PCa. Lower NPY expression level is significantly associated with more aggressive clinical behavior of PCa; PTEN and AR may have potential in defining PCa with aggressive clinical behavior. Studies along these lines have potential to define PCa-associated gene expression alterations and likely co-regulation of genes/pathways critical in the biology of PCa onset/progression. 展开更多
关键词 Prostate cancer NPY expression quantitative real-time reverse-transcript polymerase chain reaction rt-pcr
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Sequence Analysis and Quantitative Detection of Norwalk-like Viruses in Cultured Oysters of China
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作者 WANG Jun TANG Qingjuan +3 位作者 YUE Zhiqin LI Zhaojie ZHANG Jin XUE Changhu 《Journal of Ocean University of China》 SCIE CAS 2008年第2期223-227,共5页
We isolated 4 Norwalk-like viruses (NLVs) contaminated oysters from 33 Chinese oysters collected from local commercial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase (RdRp) r... We isolated 4 Norwalk-like viruses (NLVs) contaminated oysters from 33 Chinese oysters collected from local commercial sources of Shandong Province. After amplification of the RNA-dependent RNA polymerase (RdRp) region of NLVs genomes with RT-PCR, the open reading frame 1 (ORF 1) of the RdRp was sequenced and subjected to multiple-sequence alignment. The results showed that NLVs in the four isolates belong to genogroup Ⅱ. The sequence comparison showed that the similarity between four Chinese oyster isolates were higher than 99.0%, which indicated that NLVs prevalent in close areas have high homogeneity in genome sequences. In addition, the most conserved sequences between diverse NLVs were used to design primers and TaqMan probes, then the real-time quantitative PCR assay was performed. According to the standard curve of GII NLVs, the original amounts (copies) of NLVs in positive patient's fecal isolate, positive Japanese oyster isolate, and the Chinese oyster isolate were 8.9× 10^8, 1.25× 10^8 and 4.7× 10^1 respectively. The detecting limit of NLVs was 1 × 10^1 copies. This study will be helpful for routine diagnosis of NLVs pathogens in foods and thus for avoiding food poisoning in the future. 展开更多
关键词 OYSTERS Norwalk-like viruses (NLVs) reverse transcription polymerase chain reaction rt-pcr sequence analysis real time quantitative PCR
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Establishment of a Real-time Fluorescent Quantitative RTPCR Method for Detecting NP Gene of Class Ⅰ Newcastle Disease Virus(NDV)
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作者 Junping CAO Xiaoquan WANG +2 位作者 Han CHENG Xiaowen LIU Xiufan LIU 《Agricultural Biotechnology》 CAS 2018年第6期16-19,24,共5页
Newcastle disease( ND) is one of the most serious infectious diseases that infect the poultry industry.There is only one serotype of Newcastle disease virus( NDV),but NDVs can be divided into two distinct classes( cla... Newcastle disease( ND) is one of the most serious infectious diseases that infect the poultry industry.There is only one serotype of Newcastle disease virus( NDV),but NDVs can be divided into two distinct classes( class Ⅰ,and class Ⅱ) according to their genetic relationship.To develop a method for rapid quantitative detection of class Ⅰ NDV,a pair of primers and a TaqM an probe were designed and synthesized according to the conservative sequence of NP gene of class Ⅰ NDV.The positive recombinant plasmid harboring NP gene of JS-18-05 isolate was used as a positive template to establish the standard curve.A real-time fluorescent quantitative RT-PCR method was established for rapid detection of class Ⅰ NDV with strong specificity,high sensitivity and good repeatability.The established method exhibited a good linear relationship within the concentration of 102 to 108 copies of NDV,by which 1 μl of 10 copy of NDV nucleic acid could be detected in the initial template.Compared with conventional virus isolation methods,the established method had similar sensitivity and led to the same results in detecting33 class Ⅰ,class Ⅱ NDV isolates.The study provided the basis for rapid quantitative detection of class Ⅰ NDVs and further clarification of their pathogenicity and pathogenic mechanism in poultry. 展开更多
关键词 CLASS Newcastle disease virus NUCLEOCAPSID protein gene FLUORESCENT quantitative rt-pcr
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基于线粒体16S rRNA基因的鹅肉源性成分鉴别方法研究
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作者 盛中伟 樊艳凤 +3 位作者 贾晓旭 高玉时 陆俊贤 唐修君 《中国家禽》 北大核心 2024年第5期108-112,共5页
研究旨在建立基于线粒体16S rRNA基因的鹅源性成分鉴别方法。试验以鹅源性DNA为阳性模板,以猪、牛、羊、鸽、鹌鹑、火鸡、鸡和鸭等8个物种DNA为干扰模板的混合模板,设计筛选出鹅特异性引物,进行PCR和荧光定量PCR(qPCR)反应,并将鹅肉DNA... 研究旨在建立基于线粒体16S rRNA基因的鹅源性成分鉴别方法。试验以鹅源性DNA为阳性模板,以猪、牛、羊、鸽、鹌鹑、火鸡、鸡和鸭等8个物种DNA为干扰模板的混合模板,设计筛选出鹅特异性引物,进行PCR和荧光定量PCR(qPCR)反应,并将鹅肉DNA模板浓度按101~1088个梯度进行稀释,检测方法灵敏度。结果显示:所设计的引物仅对鹅肉DNA有特异性扩增,对鹅以外的其他8个物种均没有扩增;当鹅肉DNA模板稀释104倍,PCR扩增条带仍然清晰;当稀释倍数达到107时,仍有较好的扩增曲线,且Ct值小于35。研究表明,建立的畜禽肉中鹅源性成分PCR和qPCR鉴别方法不仅具有良好的特异性,而且具有较高的灵敏性,为食品中鹅源性成分的鉴别提供了新途径。 展开更多
关键词 鹅肉 16S rRNA基因 荧光定量PCR 源性成分 检测
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Establishment of Fluorescence Quantitative RT-PCR Assay for Detection of Equine Arteritis Virus
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作者 Wang Keke Liang Xinxin +7 位作者 Jiang Gangqiang Long Zhixin Hudusi Aierken Liu Zhiling Wang Yan Wu Xiaowei Xiao Yuanyuan Bai Meihua 《Animal Husbandry and Feed Science》 CAS 2024年第1期21-25,共5页
[Objective]The paper was to establish a fluorescence quantitative RT-PCR method for detection of equine arteritis virus(EAV).[Method]Primers and probes were developed for the EAV ORF7 gene sequence,and the reaction sy... [Objective]The paper was to establish a fluorescence quantitative RT-PCR method for detection of equine arteritis virus(EAV).[Method]Primers and probes were developed for the EAV ORF7 gene sequence,and the reaction system was optimized.Standard curves were established,leading to the initial development of the EAV fluorescence quantitative RT-PCR assay.The accuracy,specificity,and sensitivity of this method were subsequently evaluated.[Result]The EAV fluorescence quantitative RT-PCR assay demonstrated optimal performance at an annealing temperature of 61 C,with a final concentration of primer and probe set at 0.6μmol/L.The plasmid standard demonstrated a strong linear correlation with Ct values within the range of 1.6×10^(7)-1.6×10^(2)copies/μL.The equation of the standard curve was determined to be y=-2.68x+32.88,with an R^(2) value of 0.9927.Consequently,the EAV fluorescence quantitative RT-PCR assay was successfully established.The methodology employed was effective in detecting EAV,Theileria equi,equine herpesvirus-1(EHV-1),equine herpesvirus-4(EHV-4),and equine influenza virus(EIV).The findings indicated that the method was specifically capable of detecting EAV,while the other pathogens tested yielded negative results.The method demonstrated a high degree of specificity.It was employed to detect the standard plasmid cRNA synthesized through in vitro transcription following a 10-fold dilution.The results indicated that the minimum detection limit of the method was 1.6×10^(2) copies/μL,and it exhibited high sensitivity.The coefficient of variation,both within and between groups,was maintained at 1.8%,indicating good reproducibility.In this study,the fluorescence quantitative RT-PCR assay developed was utilized alongside the EAV fluorescence quantitative RT-PCR assay established by previous researchers to analyze a total of 234 clinical samples.Both methods yielded a positive detection rate of 14.1%,and the coincidence rate between the two techniques was found to be 100%.[Conclusion]The fluorescence quantitative RT-PCR assay developed in this study offers a novel approach and concept for the prevention and control of equine viral arteritis(EVA). 展开更多
关键词 Equine arteritis virus(EAV) ORF7 gene Fluorescence quantitative rt-pcr
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荧光定量RT-PCR检测mdr-1基因表达 被引量:13
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作者 高劲松 马刚 +3 位作者 仝明 陈佩毅 王传华 何蕴韶 《癌症》 SCIE CAS CSCD 北大核心 2000年第3期200-203,共4页
目的 :建立荧光定量RT PCR检测肿瘤细胞mdr 1基因表达的方法 ,了解肺癌组织中mdr 1的表达水平。方法 :建立荧光定量RT PCR方法 ,在PE770 0型检测仪上定量检测K5 6 2 /ADM耐药株和K5 6 2不耐药株细胞mdr 1基因表达水平 ,同时检测 45例初... 目的 :建立荧光定量RT PCR检测肿瘤细胞mdr 1基因表达的方法 ,了解肺癌组织中mdr 1的表达水平。方法 :建立荧光定量RT PCR方法 ,在PE770 0型检测仪上定量检测K5 6 2 /ADM耐药株和K5 6 2不耐药株细胞mdr 1基因表达水平 ,同时检测 45例初治肺部肿瘤病人组织标本。结果 :荧光定量RT PCR检测K5 6 2 /ADM耐药株和K5 6 2不耐药株细胞mdr 1基因表达 ,重复 10次实验所得结果平均分别为 (6 86± 0 6 5 )× 10 7拷贝 /μgRNA和 (8 49± 0 6 7)× 10 5拷贝 /μgRNA ,两者相差 80 8倍 ,变异系数分别为 9 5 %和 7 9%。 45例肺部肿瘤中 ,有 12例检出有mdr 1基因不同程度的表达。结论 :荧光定量RT PCR检测mdr 1基因表达方法 ,检测结果用绝对拷贝数来表示 ,定量准确可靠 ,并有利于标准的统一。有 1/4未经化疗的肺癌病人有一定水平mdr 展开更多
关键词 荧光定量检测 rt-pcr MDR-1基因 肺肿瘤
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猪瘟兔化弱毒疫苗株TaqMan荧光定量RT-PCR检测方法的建立及初步应用 被引量:6
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作者 刘大伟 张小飞 +3 位作者 胡来根 李郁 尹秀凤 毛火云 《中国预防兽医学报》 CAS CSCD 北大核心 2010年第6期446-450,共5页
为建立一种快速鉴定猪瘟兔化弱毒疫苗株(HCLV)的方法,本研究根据GenBank中登录的HCLV株基因组序列,在Erns基因序列区内设计一对引物和一条TaqMan探针,建立了检测HCLV的荧光定量RT-PCR(FQRT-PCR)方法。该方法检测的灵敏度可达3.84拷贝/... 为建立一种快速鉴定猪瘟兔化弱毒疫苗株(HCLV)的方法,本研究根据GenBank中登录的HCLV株基因组序列,在Erns基因序列区内设计一对引物和一条TaqMan探针,建立了检测HCLV的荧光定量RT-PCR(FQRT-PCR)方法。该方法检测的灵敏度可达3.84拷贝/μL;而对猪细小病毒、猪伪狂犬病毒、猪繁殖与呼吸障碍综合征病毒、牛病毒性腹泻病毒基因组扩增结果均为阴性。实验组批内变异系数为1.05%~1.84%,批间变异系数为3.70%~5.43%。通过对32批HCLV半成品抗原和9批成品疫苗,分别用经典的兔检法测定兔体感染量(RID)和新建立的FQRT-PCR方法进行检测比较,两者有较好的相关性。结果表明,该方法具有快速、敏感、特异性强、稳定性好等优点,对HCLV生产配制及成品检验具有指导作用。 展开更多
关键词 猪瘟兔化弱毒疫苗 荧光定量RT—PCR 检测 初步应用
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快速检测猪瘟兔化弱毒疫苗株的TaqMan荧光定量RT-PCR方法的建立 被引量:3
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作者 高博 杨晓农 +3 位作者 于学辉 刘内生 向毅勇 曾光志 《西南民族大学学报(自然科学版)》 CAS 2009年第1期92-97,共6页
在猪瘟病毒兔化弱毒疫苗株(HCLV)的5′端非编码区设计一对引物和一条TaqMan探针,通过优化反应条件,成功建立了特异性检测HCLV的荧光定量RT-PCR方法.结果表明:该方法检测的最低拷贝数为45拷贝/μL,灵敏度比普通PCR方法高104倍,在较广的... 在猪瘟病毒兔化弱毒疫苗株(HCLV)的5′端非编码区设计一对引物和一条TaqMan探针,通过优化反应条件,成功建立了特异性检测HCLV的荧光定量RT-PCR方法.结果表明:该方法检测的最低拷贝数为45拷贝/μL,灵敏度比普通PCR方法高104倍,在较广的范围内(4.5×101~4.5×106拷贝/μL)有良好的线性关系(r=0.994);分别以乙型脑炎病毒、猪繁殖与呼吸综合征病毒、副猪嗜血杆菌、牛病毒性腹泻/黏膜病病毒作为模板进行TaqManRT-PCR扩增,未出现阳性信号;4个不同浓度标准品组内试验变异系数为1.90%~5.82%,组间试验变异系数为4.02%~5.69%;HCLV3个cDNA样本组内试验变异系数为3.72%~4.93%;组间试验变异系数为2.99%~4.02%.该方法具有很好的灵敏性、特异性及稳定性,能够快速准确定量检测HCLV,为HCLV疫苗的研制、猪瘟病毒分子生物学等方面研究提供了一种快捷有效的工具. 展开更多
关键词 猪瘟兔化弱毒疫苗株(HCLV) 荧光定量rt-pcr TaqMan荧光探针 定量检测
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荧光定量RT-PCR检测OATP-E基因表达 被引量:4
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作者 蔡莉 孔庆暖 郭成浩 《山东大学学报(医学版)》 CAS 北大核心 2007年第1期27-30,共4页
目的:建立荧光定量RT-PCR检测肿瘤细胞有机阴离子转运多肽E(organic anion transportingpolypeptide-E,OATP-E)mRNA的方法,了解乳腺癌细胞株MCF-7和对阿霉素耐药的乳腺癌细胞株MCF-7/ADR中OATP-E mRNA的表达水平。方法:构建重组质粒,绘... 目的:建立荧光定量RT-PCR检测肿瘤细胞有机阴离子转运多肽E(organic anion transportingpolypeptide-E,OATP-E)mRNA的方法,了解乳腺癌细胞株MCF-7和对阿霉素耐药的乳腺癌细胞株MCF-7/ADR中OATP-E mRNA的表达水平。方法:构建重组质粒,绘制荧光定量RT-PCR检测OATP-E mRNA的标准曲线,并运用此方法检测MCF-7/ADR和MCF-7细胞株中OATP-E mRNA的表达。结果:荧光定量RT-PCR检测MCF-7和MCF-7/ADR细胞OATP-E的基因表达,重复10次实验所得结果平均分别为5.47×105拷贝数/μgRNA和2.82×104拷贝数/μg RNA,两者相差约19.4倍,P<0.05。结论:成功建立了荧光定量RT-PCR检测OATP-E基因表达的方法,检测结果用绝对拷贝数表示,定量准确可靠,并有利于标准的统一。初步应用发现乳腺癌耐药株MCF-7/ADR中OATP-E mRNA的表达量比不耐药株MCF-7减少。 展开更多
关键词 聚合酶链反应 荧光定量 OATP-E 基因表达
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用荧光定量RT-PCR检测鼻咽癌病人外周血CK-19 mRNA的表达 被引量:2
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作者 白守民 梁碧玲 +4 位作者 崔念基 刘宜敏 尹爱华 薛卫平 孙颖 《中山大学学报(医学科学版)》 CAS CSCD 北大核心 2003年第3期249-252,共4页
【目的】探讨鼻咽癌病人外周血中CK-19 mRNA表达与鼻咽癌临床的关系。【方法】用荧光定量RT-PCR方法检测97例鼻咽癌病人及26例正常人外周血中CK-19 mRNA的表达量。【结果】鼻咽癌病人外周血中CK-19 mRNA阳性表达94%(91/97),健康对照组... 【目的】探讨鼻咽癌病人外周血中CK-19 mRNA表达与鼻咽癌临床的关系。【方法】用荧光定量RT-PCR方法检测97例鼻咽癌病人及26例正常人外周血中CK-19 mRNA的表达量。【结果】鼻咽癌病人外周血中CK-19 mRNA阳性表达94%(91/97),健康对照组阳性表达8%(2/26);T4期病人及远处转移病人外周血中CK-19 mRNA拷贝数显著升高,CK-19 mRNA拷贝数与鼻咽癌临床分期呈正相关。【结论】荧光定量RT-PCR方法检测鼻咽癌病人外周血CK-19 mRNA表达,方法简单、准确,在预测鼻咽癌远处转移及准确临床分期方面有一定可行性。 展开更多
关键词 荧光定量rt-pcr 鼻咽癌 外周血 CK-19MRNA 临床分期 肿瘤转移
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miR-451a和miR-21-5p双重实时荧光定量PCR检测体系的建立及应用
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作者 胡舒啸 陈惠香 +5 位作者 胡胜 赵一霞 季安全 李洋 廉洁 孙启凡 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2024年第3期706-715,共10页
目的为了提高微量样本中miRNA的检测通量和检测效率,本文建立了一种能够同时准确定量两种miRNA的双重实时荧光定量PCR(real time fluorogenic quantitative PCR)检测体系,并通过实际样本检测验证其应用于体液鉴别的效果。方法设计适用于... 目的为了提高微量样本中miRNA的检测通量和检测效率,本文建立了一种能够同时准确定量两种miRNA的双重实时荧光定量PCR(real time fluorogenic quantitative PCR)检测体系,并通过实际样本检测验证其应用于体液鉴别的效果。方法设计适用于miRNA双重检验的相关引物及探针并优化实验体系组分,建立基于TaqMan技术的miRNA双重实时荧光定量PCR检测体系并验证其特异性、灵敏度和可重复性;使用此检测体系对58份不同体液样本中的miR-451a与miR-21-5p进行检测,并借助miR-451a与miR-21-5p的比值鉴定法评估该体系的体液鉴别能力;使用该检测体系样本数据确定的最佳截断值对模拟案件样本进行鉴别。结果优化的检测体系能够实现对血液与非血液、月经血与外周血的100%区分,同时可以实现对模拟案件样本的准确鉴别。结论该双重实时荧光定量PCR检测体系将时间和材料成本均缩短至原来的一半,为后续建立更多重的实时荧光定量PCR检测体系并应用于体液鉴别打下了基础。 展开更多
关键词 法医遗传学 体液鉴别 双重实时荧光定量PCR MICRORNA
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