Preclinical safety,effectiveness evaluation,and screening of functional bacteria for fecal microbiota transplantation based on germ-free animals

Fecal microbiota transplantation(FMT),also known as fecal bacterial therapy,is a treatment option that can quickly reconstruct the normal composition of intestinal microbes,and it has a good therapeutic effect on Clostridium difficile infection,as well as on other microecological disorders.However,the causal mechanism of FMT efficacy remains to be clarified,its safety is a major problem,and the standardization and acceptability of FMT need to be improved.This review summarizes its current research status and potential research areas that need to be strengthened,and proposes to clarify the safety of FMT and the causal relationship between FMT and therapeutic effectiveness based on germ-free animals.Meanwhile,the research system is combined with multiomics technology to screen the effective bacteria in FMT,and develop standard,safe,effective and controllable flora of FMT.

The diversity and potential function of endophytic bacteria isolated from Kobreasia capillifolia at alpine grasslands on the Tibetan Plateau, China

A total of 50 endophytic bacterial isolates were obtained from Kobreasia capillifolia at alpine grasslands in the Eastern Qilian Mountains on the Tibetan Plateau in China. Based on the sequencing and phylogenetic analysis of 16 S r DNA genes, all isolates phylogenetically related closely to Bacillus, Acinetobacter, Stenotrophomonas, Brevundimonas, Arthrobacter, Curtobacterium, Paenibacillus, Plantibacter, Promicromonospora, Serratia, and Microbacterium, among which Bacillus was the predominant genus（47.8% of the total number of endophytic isolates）. These isolates possessed different biological functions. In 50 endophytic bacteria, 42 isolates produced indole acetic acid（IAA） on King medium. There were seven isolates showing potency of mineral phosphate solubilization in Pikovaskaia＇s（PKO） liquid medium. Seven isolates exhibited antagonistic effect against Fusarium avenaceum, Colletotrichum coccodes and Phoma foveata. This was the first report on diversity and plant growth promotion of endophytic bacteria from K. capillifolia on alpine grassland in the Eastern Qilian Mountains, Chain. It is essential for revealing the relationship among plant, microorganism, and the special environment because the potential function of endophytic bacteria made a contribution to the interactions of plants and endophytic bacteria.

Tank-dependence of the functionality and network differentiation of activated sludge community in a full-scale anaerobic/anoxic/aerobic municipal sewage treatment plant

Understanding the structures and dynamics of bacterial communities in activated sludge(AS)in full-scale wastewater treatment plants(WWTPs)is of both engineering and ecological significance.Previous investigations have mainly focused on the AS communities of WWTP aeration tanks,and the differences and interactions between the communities in anaerobic and anoxic tanks of the AS system remain poorly understood.Here,we investigated the structures of bacterial communities and their inter-connections in three tanks(anaerobic,anoxic,and aerobic)and influent from a full-scale WWTP with conventional anaerobic/anoxic/aerobic(A/A/O)process over a year to explore their functionality and network differentiation.High-throughput sequencing showed that community compositions did not differ appreciably between the different tanks,likely due to the continuous sludge community interchange between tanks.However,network analysis showed significant differences in inter-species relationships,OTU topological roles,and keystone populations in the different AS communities.Moreover,the anoxic network is expected to be more unstable and easily affected by environmental disturbance.Tank-associated environmental factors,including dissolved oxygen,pH,and nutrients,were found to affect the relative abundance of functional genera(i.e.,AOB,NOB,PAOs,and denitrifiers),suggesting that these groups were more susceptible to environmental variables than other bacteria.Therefore,this work could assist in improving our understanding of tank-associated microbial ecology,particularly the response of functional bacteria to seasonal variations in WWTPs employing A/A/O process.

Continuous cropping of alfalfa (Medicago sativa L.) reduces bacterial diversity and simplifies cooccurrence networks in aeolian sandy soil

Alfalfa is a perennial herbaceous forage legume that is remarkably and negatively affected by monocropping.However,the contribution of the changes in bacterial communities to soil sickness in alfalfa have not been elucidated.Therefore,we investigated bacterial community structures in response to monocropped alfalfa along the chronosequence.Continuous cropping remarkably reduced bacterial alpha diversity and altered community structures,and soil pH,total P and available P were strongly associated with the changes of bacterial diversity and community structures.Intriguingly,10 years of monocropped alfalfa might be a demarcation point separating soil bacterial community structures into two obvious groups that containing soil samples collected in less and more than 10 years.The relative abundances of copiotrophic bacteria of Actinobacteria and Gammaproteobacteria significantly increased with the extension of continuous cropping years,while the oligotrophic bacteria of Armatimonadetes,Chloroflexi,Firmicutes and Gemmatimonadetes showed the opposite changing patterns.Among those altered phyla,Actinobacteria,Chloroflexi,Alphaproteobacteria and Acidobacteria were the most important bacteria which contributed 50.86%of the community variations. Additionally, the relative abundances of nitrogen fixation bacteria ofBradyrhizobium and Mesorhizobium obviously increased with continuous cropping years, while theabundances of Arthrobacter, Bacillus, Burkholderiaceae and Microbacterium with potential functionsof solubilizing phosphorus and potassium remarkably decreased after long-term continuouscropping. Furthermore, bacterial cooccurrence patterns were significantly influenced by continuouscropping years, with long-term monocropped alfalfa simplifying the complexity of the cooccurrencenetworks. These findings enhanced our understandings and provided references for forecasting howsoil bacterial communities responds to monocropped alfalfa.

Characteristics of sewer biofilms in aerobic rural small diameter gravity sewers

Small diameter gravity sewers(SDGS)are extensively used to collect rural sewage as they are low in cost and quick to construct.However,the characteristics of biofilms in rural SDGS are still not clear.In this study,biofilms characteristics of aerobic rural SDGS were investigated using simulations in a lab under different flow conditions and slopes.Results indic ated that the average thickness of aerobic rural SDGS biofilms was in the range of 350-650μm,decreasing at locations with variable flow and high slopes.Protein was the most abundant substance in extracellular polymeric substance of SDGS biofilms.The most abundant bacteria,Proteobacteria,Actinobacteria,and Bacteroidetes,and functional bacteria showed different distributions when analyzed through Illumina HiSeq sequencing of 16 S rRNA.The relative abundances of denitrifying bacteria,nitrite-oxidizing bacteria,and sulfate-reducing bacteria(SRB)were lower during variable flow than during stable flow.High slopes(15‰)decreased SRB presence,which could be used to mitigate H2 S accumulation in aerobic SDGS.Overall,this study describes the characteristics of aerobic rural SDGS biofilms and provides valuable suggestions for the optimal design of SDGS based on these characteristics.