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翘嘴鳜per1 mRNA表达量分析中采用的内参基因稳定性比较 被引量:4
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作者 吴萍 张方亮 +2 位作者 杨程涌 张建社 褚武英 《激光生物学报》 CAS 2017年第4期379-384,共6页
为筛选生物钟核心基因per1表达定量中的相对稳定性最好的内参基因,本研究取翘嘴鳜成鱼心脏、肝脏、肾脏、脑、红肌、白肌、肠、眼和脾等九个组织为研究对象,选取GAPDH、18S rRNA、β-actin、rps29、RPL13a、B2M和EF1a为内参基因,采用实... 为筛选生物钟核心基因per1表达定量中的相对稳定性最好的内参基因,本研究取翘嘴鳜成鱼心脏、肝脏、肾脏、脑、红肌、白肌、肠、眼和脾等九个组织为研究对象,选取GAPDH、18S rRNA、β-actin、rps29、RPL13a、B2M和EF1a为内参基因,采用实时荧光定量PCR(qRT-PCR)对per1基因mRNA表达水平进行检测分析。研究结果表明18S rRNA和GAPDH的平均稳定值M最低,相对表达量最稳定。以18S rRNA和GAPDH为内参基因时分析发现per1基因表达量在肝脏中最高。本研究为在鱼类per1 mRNA表达检测过程中选用稳定的内参基因提供了实验和理论参考。 展开更多
关键词 翘嘴鳜 基因 QRT-PCR GeNomi软件 内参基因
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Genomic,Lipidomic,and Metabolomic Analysis of Cyclooxygenase-null Cells:Eicosanoid Storm,Cross Talk,and Compensation by COX-1
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作者 Abul B.M.M.K.Islam Mandar Dave +2 位作者 Sonia Amin Roderick V.Jensen Ashok R.Amin 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2016年第2期81-93,共13页
The constitutively-expressed cyclooxygenase 1(COX-1) and the inducible COX-2 are both involved in the conversion of arachidonic acid(AA) to prostaglandins(PGs).However,the functional roles of COX-1 at the cellul... The constitutively-expressed cyclooxygenase 1(COX-1) and the inducible COX-2 are both involved in the conversion of arachidonic acid(AA) to prostaglandins(PGs).However,the functional roles of COX-1 at the cellular level remain unclear.We hypothesized that by comparing differential gene expression and eicosanoid metabolism in lung fibroblasts from wild-type(WT) mice and COX-2^(-/-) or COX-1^(-/-) mice may help address the functional roles of COX-1 in inflammation and other cellular functions.Compared to WT,the number of specifically-induced transcripts were altered descendingly as follows:COX-2^(-/-) 〉 COX-1^(-/-) 〉 WT + IL-1β.COX-1^(-/-) or COX-2^(-/-) cells shared about 50%of the induced transcripts with WT cells treated with IL-1β,respectively.An interactive "anti-inflammatory,proinflammatory,and redox-activated" signature in the protein-protein interactome map was observed in COX-2^(-/-) cells.The augmented COX-1mRNA(in COX-2^(-/-) cells) was associated with the upregulation of mRNAs for glutathione S-transferase(GST),superoxide dismutase(SOD),NAD(P)H dehydrogenase quinone 1(NQO1),aryl hydrocarbon receptor(AhR),peroxiredoxin,phospholipase,prostacyclin synthase,and prostaglandin E synthase,resulting in a significant increase in the levels of PGE2,PGD2,leukotriene B4(LTB4),PGF(1α),thromboxane B2(TXB2),and PGF(2α).The COX-1 plays a dominant role in shifting AA toward the LTB4 pathway and anti-inflammatory activities.Compared to WT,the upregulated COX-1 mRNA in COX-2^(-/-) cells generated an "eicosanoid storm".The genomic characteristics of COX-2^(-/-) is similar to that of proinflammatory cells as observed in IL-1β induced WT cells.COX-1^(-/-) and COX-2^(-/-) cells exhibited compensation of various eicosanoids at the genomic and metabolic levels. 展开更多
关键词 PROSTAGLANDINS Metabolomics Lung fibroblasts genomies Inflammation
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Genetic architecture, epigenetic influence and environment exposure in the pathogenesis of Autism 被引量:11
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作者 YU Li WU YiMing WU Bai-Lin 《Science China(Life Sciences)》 SCIE CAS CSCD 2015年第10期958-967,共10页
Autism spectrum disorder(ASD) is a spectral neurodevelopment disorder affecting approximately 1% of the population. ASD is characterized by impairments in reciprocal social interaction, communication deficits and rest... Autism spectrum disorder(ASD) is a spectral neurodevelopment disorder affecting approximately 1% of the population. ASD is characterized by impairments in reciprocal social interaction, communication deficits and restricted patterns of behavior. Multiple factors, including genetic/genomic, epigenetic/epigenomic and environmental, are thought to be necessary for autism development. Recent reviews have provided further insight into the genetic/genomic basis of ASD. It has long been suspected that epigenetic mechanisms, including DNA methylation, chromatin structures and long non-coding RNAs may play important roles in the pathology of ASD. In addition to genetic/genomic alterations and epigenetic/epigenomic influences, environmental exposures have been widely accepted as an important role in autism etiology, among which immune dysregulation and gastrointestinal microbiota are two prominent ones. 展开更多
关键词 autism spectrum disorder genetic architecture genomie disorder gene mutation copy number variants single nucleotide variants genetic pathways epigenetic influence DNA methylation chromatin remodeling long non-coding RNAs environment exposure immune dysregulation gastrointestinal microbiota
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