Reorganization of 3D genome architecture provides insights into pathogenesis of early fatty liver disease in laying hens

Background Fatty liver disease causes huge economic losses in the poultry industry due to its high occurrence and lethality rate.Three-dimensional(3D)chromatin architecture takes part in disease processing by regulating tran-scriptional reprogramming.The study is carried out to investigate the alterations of hepatic 3D genome and H3K27ac profiling in early fatty liver(FLS)and reveal their effect on hepatic transcriptional reprogramming in laying hens.Results Results show that FLS model is constructed with obvious phenotypes including hepatic visible lipid deposi-tion as well as higher total triglyceride and cholesterol in serum.A/B compartment switching,topologically associat-ing domain(TAD)and chromatin loop changes are identified by high-throughput/resolution chromosome conforma-tion capture(HiC)technology.Targeted genes of these alternations in hepatic 3D genome organization significantly enrich pathways related to lipid metabolism and hepatic damage.H3K27ac differential peaks and differential expres-sion genes(DEGs)identified through RNA-seq analysis are also enriched in these pathways.Notably,certain DEGs are found to correspond with changes in 3D chromatin structure and H3K27ac binding in their promoters.DNA motif analysis reveals that candidate transcription factors are implicated in regulating transcriptional reprogram-ming.Furthermore,disturbed folate metabolism is observed,as evidenced by lower folate levels and altered enzyme expression.Conclusion Our findings establish a link between transcriptional reprogramming changes and 3D chromatin struc-ture variations during early FLS formation,which provides candidate transcription factors and folate as targets for FLS prevention or treatment.

Laser absorption spectroscopy for high temperature H_2O time-history measurement at 2.55 μm during oxidation of hydrogen

Concentration time-histories of H20 were measured behind reflected shock waves during hydrogen combustion. Experiments were conducted at temperatures of 1117-1282 K, the equivalence ratios of 0.5 and 0.25, and a pressure at 2 atm using a mixture of H2/O2 highly diluted with argon. H2O was monitored using tunable mid-infrared diode laser absorption at 2.55 μm （3920.09 cm-1）. These time-histories provide kinetic targets to test and refine reaction mechanisms for hydrogen. Comparisons were made with the predictions of four detailed kinetic mechanisms published in the last four years. Such comparisons of H2O concentration profiles indicate that the AramcoMech 2.0 mechanism yields the best agreement with the experimental data, while CRECK, San Diego, and HP-Mech mechanisms show significantly poor predictions. Reaction pathway analysis for hydrogen oxidation indicates that the reaction H ＋ OH ＋ M = H20 ＋ M is the key reaction for controlling the H2O formation by hydrogen oxidation. It is inferred that the discrepancy of the conversion percentage from H to H20 among these four mechanisms induces the difference of performance on H2O time-history predictions. This work demonstrates the potential of time-history measurement for validation of large reaction mechanisms.