The contribution of botanic gardens to ex situ conservation through seed banking

Target 8 of the Global Strategy for Plant Conservation calls for 'at least 75 per cent of threatened plant species in ex situ collections, preferably in the country of origin, and at least 20 per cent available for recovery and restoration programmes by 2020'.Botanic gardens make a significant contribution to ex situ conservation of wild species with more than a third of plant species represented in botanic gardens collections. These collections are a combination of living collection and seed banked material. Seed banking can provide an efficient form of conservation for wild plant genetic diversity.Information from Botanic Gardens Conservation International's(BGCI) databases(GardenSearch,PlantSearch, ThreatSearch and GlobalTreeSearch) has been analysed as well as survey data to report on global, regional and national seed banking trends.Information from BGCI's databases indicates that there are at least 350 seed banking botanic gardens in 74 countries. In total 56,987 taxa have been banked including more than 9000 taxa that are threatened with extinction. 6881 tree species are stored in ex situ seed bank collections. More than half(3562) of these tree species are single country endemics and represent species from more than 166 countries.This study suggests that institutions are increasingly conserving plant species via seed banking.However the majority of species in collections that have a conservation assessment are not threatened with extinction. This disjunction between species that are threatened and those conserved in seed banks needs to be addressed. Data from BGCI's databases can be used to enable prioritisation of threatened plant species for collection and conservation in seed banks. Further recommendations for botanic gardens involved in seed conservation are presented.

Genotyping ex situ trees of Abies nebrodensis translocated from the original Sicilian population to enrich the gene pool

As a dynamic ex situ conservation strategy,a clonal seed orchard was started in a nursery in Pomaio(POM)in central Italy in 1993 for an assisted migration experiment of Abies nebrodensis(Lojac.)Mattei.Two artifi cial ex situ populations were planted with this gene pool:a seedling arboretum in Pieve Santo Stefano(PSS)and a small dendrological collection in Papiano(PAP),both originating from the Sicilian relict population.Here,using AFLP markers,we estimated the relatedness among the relocated genotypes of the three collections to check whether the three collections had suffi cient genetic variability to be considered as additional sources of variability to the original gene pool for the assisted migration strategy.High individual genetic variability was found in the collections;each plant had a diff erent genotype and was confi rmed to belong to its population of origin.PAP and PSS trees were shown to be only from the original population of A.nebrodensis species and were derived from a limited set of maternal fertile genotypes.Based on the Sicilian fi r population inventory,nursery production in Sicily,and structure clustering analysis,close genetic relationships among POM,PAP and several PSS trees(1–35)were evident.Similarly,the PSS group(36–78)was genetically close to tree 1 of POM and in a lesser proportion to plants 7 and 9 of POM.The sampling of seedlings used to form batches in the nursery might have infl uenced the structure of the resultant plantations.All genotypes will be useful for enriching the original gene pool.

In-situ Protection Management and Conservation Study of Some Medicinal Plants

In-situ study on eleven commercially important species viz; Adiantum capillus-veneris L, Bergenia ciliata (Haw) Sternb, Colchicum luteum Baker, Polygonum amplexicaule D.Den, Cuminum cyminum L, Dioscorea deltoidea Wall Kunth,L Morchella esculenta L, Paeonia emodi Wall ex H Kf, Podophyllum hexandrum (Royle) Chatt & Mukh, Valeriana wallichii DC and Viola serpens Wall ex Roxb was conducted in four locations viz; Malam (1 400 to 2 000?m),Bargin (1 700 to 2 300?m),Biakand (1 500 to 2 100?m) and Shinko (2 100 to 2 700?m).The data was recorded from both protected and unprotected sites of each site.Each site had 3 altitudinal sampling point.The density, herbage coverage and fresh biomass were determined in each locations for every species.All the investigated parameters generally showed an increase of 3 to 6 times over unprotected sites in each locations. Morchella esculenta,Dioscorea deltoidea,Colchicum luteum and Podophyllum hexandrum were absent in all unprotected sites while other species had low values in these sites.The investigated parameters of Colchicum luteum,Bergenia ciliata,Paeonioa emodi,Dioscorea deltoidea and Podophyllum hexandrum generally increased with the increasing elevation.Soil analysis,soil and air temperatures were recorded for each site.The air and soil temperature were slightly higher in open areas than in the protected site and showed decrease with increasing elevation.While the soil fertility was relatively high in protected sites as compared to unprotected area.The study shows that protection promotes the growth, distribution and occurrence of medicinal plants.It is possible with the participation of local communities to conserve these resources.

<i>In Situ</i>Conservation of Wild Rice Populations: A Targeted Study of Common Wild Rice <i>Oryza rufipogon</i>from China

Although great accomplishments of in situ conservation have been made during the last decade throughout the world, there is an urgent need to conduct more targeted research to explore many basic questions about crop wild relatives (CWR) in situ conservation such as how to better identify and manage the target in situ conservation populations of CWR. In this study, we performed an extensive field investigation of 201 natural populations or habitats of O. rufipogon, a seriously endangered wild progenitor of cultivated rice in China. Our updated information suggests that: 1) the majority of the natural populations have been extinct throughout China, which leads to serious fragmentation of the population system as a whole;and 2) the survived populations have become small in size and thus fragmented within the population as a result of the loss of subpopulations. To assess the relationships between the biodiversity education and conservation of wild rice, we employed participatory approaches in the field investigation. Our data indicate that the continuous rapid decline of biodiversity education seemed closely related to the extinction of wild rice germplasm. These findings imply the potential necessity and huge challenge for making in situ conservation plans in the future. By means of our understanding of ecogeography, sociology and culture, and population genetics of the species, we propose a strategy for selecting in situ conservation locations as well as priority sites for establishing in situ conservation practices in China.

Complementarities of two existing intermediate conservation approaches

The need for integration of ex situ and in situ approaches in conservation of plants has long been recognized. However, ex situ collections have numerous limitations that reduce their utility for conservation, necessitating the introduction of new, more appropriate, flexible and less costly approaches.Two new approaches that can be called "intermediate" between in situ and ex situ, and bridging them in some way have been proposed over the last two decades. In these approaches material collected in natural populations is planted and maintained outside the original location, but with a different purpose.While the purpose of the inter situs approach is reintroduction, the concern of the quasi in situ approach is long-term storage of species genetic diversity. I view these two approaches as complementary and necessary components of conservation-oriented restoration. In restoration of a degraded habitat using threatened species(i.e. inter situs), quasi in situ collections can serve an important role in providing longterm preservation of these species' genetic diversity and production of seeds needed for restoration.

Ex situ Flora of China

The role of living collections-based research and discovery has been a prominent feature throughout the history of evolution and advance of botanical science: such research is the core and soul of the botanical gardens. Currently, there are c. 162 Chinese botanical gardens, harboring c. 20,000 species in China. As an example of initiatives to utilize the garden cultivated flora to address plant diversity conservation and germplasm discovery for sustainable agriculture and the bio-industries, the Ex situ Flora of China project aims to catalog and document this mega-diversity of plants that are cultivated in the Chinese botanical gardens. The concept of Ex situ Flora of China is a complete new formulation of species, based on garden cultivated individuals and populations, to obtain better morphological descriptions, provide multipurpose applicability and a fundamental data service that will support national bio-strategies and bioindustries. It emphasises integrative information, accurately collected from living collections across different Chinese botanical gardens, on biology, phenology, cultivation requirements and uses of plant resources, which are normally not available from traditional Floras based on herbarium specimens. The ex situ flora should provide better information coverage for taxonomy, biological and introduction and collection data and color photos of stems, leaves, flowers, fruits and seed, as well as useful information of cultivation key points and main use of each plant. In general, the Ex situ Flora of China provides more useful information than the traditional Flora Reipublicae Popularis Sinicae. The project of Ex situ Flora of China is planned to be one of the most important initiatives of the plant diversity research platform for sustainable economic and social development in China.

Linking Local Appreciation with Conservation of an Edible Fruit Species: The Case Study of Ilama (<i>Annona diversifolia</i>Saff.) in Tierra Caliente, Mexico

The ilama tree (Annona diversifolia Saff.) is an underutilized fruit species from Mesoamerica with a noteworthy variability in southern Mexico. The present study describes differences in knowledge and appreciation of the fruit among inhabitants from different communities in Southern Mexico, as well as differences among their ilama trees. The study took place in Tierra Caliente, a region located in the states of Guerrero and the State of Mexico. Interviews were administered in three different communities as an attempt to associate the natural morphologic variation of plants and locals’ knowledge and use of the tree in order to identify their implications for conservation. Data were analyzed by multivariate analysis, and the results suggest that the morphological variation of the plants and the commercial importance of ilama are well known by locals. Indigenous community inhabitants prefer and select only white pulp trees, whereas mestizo communities promote and conserve plants with white, red, purple, and blue pulp. Germplasm flow is dynamic in the region, and ilama fruit represents a different economic value for each community. Selling the fruit is the primary goal, but not specifically its conservation and promotion. Implications for in situ conservation of ilama in Mexico are discussed.

Orchid conservation in China from 2000 to 2020:Achievements and perspectives

We review achievements in the conservation of orchid diversity in China over the last 21 years.We provide updated information on orchid biodiversity and suggestions for orchid conservation in China.We outline national policies of biodiversity conservation,especially of orchid conservation,which provide general guidelines for orchid conservation in China.There are now approximately 1708 known species of Orchidaceae in 181 genera in China,including five new genera and 365 new species described over the last 21 years.The assessment of risk of extinction of all 1502 known native orchid species in China in 2013 indicated that 653 species were identified as threatened,132 species were treated as data-deficient,and four species endemic to China were classified as extinct.Approximately 1100 species(ca.65%)are protected in national nature reserves,and another~66 species in provincial nature reserves.About 800 native orchid species have living collections in major botanical gardens.The pollination biology of 74 native orchid species and the genetic diversity and spatial genetic structure of 29 orchid species have been investigated at a local scale and/or across species distributions.The mycorrhizal fungal community composition has been investigated in many genera,such as Bletilla,Coelogyne,Cymbidium,Cypripedium,and Dendrobium.Approximately 292 species will be included in the list of national key protected wild plants this year.Two major tasks for near future include in situ conservation and monitoring population dynamics of endangered species.

Conservation utility of botanic garden living collections:Setting a strategy and appropriate methodology

In the realities of the modern world, when the natural habitat is rapidly disappearing and the number of imperiled plants is constantly growing, ex situ conservation is gaining importance. To meet this challenge, botanic gardens need to revise both their strategic goals and their methodologies to achieve the new goals. This paper proposes a strategy for the management of threatened plants in living collections,which includes setting regional conservation priorities for the species, creation of genetically representative collections for the high priority species, and usage of these collections in in situ actions. In this strategy, the value of existing and future species living collections for conservation is determined by the species' conservation status and how well the accessions represent their natural genetic variation.

Genetic diversity of the endangered species Rosa rugosa Thunb.in China and implications for conservation strategies

Rosa rugosa Thunb. is one of the dominant and important shrub species in estuary dunes and shingle beaches of northern China. However, its area of distribution, the number of populations, and the size of each population have decreased rapidly in the past two decades because of habitat degradation and loss. Random amplified polymorphic DNA markers were used to determine the genetic diversity of four remaining large natural populations of R. rugosa and to discuss an effective conservation strategy for this endangered species in China. High genetic variations were detected in R. rugosa populations in China. The mean percentage of polymorphic loci （P%） within four local populations was 57.99%, with the P% of the total population being 75.30%. Mean Shannon＇s information index （H0） was 0.2826, whereas total Ho was 0.3513. The genetic differentiation among populations was 0.1878, which indicates that most genetic diversity occurs within populations. Population Tumenjiang （TMJ） showed the highest genetic diversity （P% = 66.27%; H0 = 0.3117） and contained two exclusive bands. Population Changshandao （CSD） showed higher genetic diversity （P% =59.04%; H0 = 0.3065）. Populations TMJ and CSD contained 95.33% and 99.33%, respectively, of loci with moderate to high frequency （P〉0.05） of the total population. These results indicate that populations TMJ and CSD should be given priority for in situ conservation and regarded as seed or propagule sources for ex situ conservation. The results of the present study also suggest that R. rugosa in China has become endangered as a result of human actions rather than genetic depression of populations; thus, human interference should be absolutely forbidden in R. rugosa habitats.

Evaluating germinability of eight desert halophytes under long-term seed storage: Implications for conservation

Ex situ conservation in seed banks is a potential complementary conservation strategy for native plant species.It is well established that ex situ seed banking of native wild plants prolongs seed viability and thereby preserves genetic and species diversity for future use.We evaluated ex situ storage potential of eight halophytic species from deserts in the United Arab Emirates(UAE)by studying seed germination.Specifically,we examined the germinability of freshly collected seeds and seeds stored for three years in a seed bank.We also examined the effect of light conditions on fresh and stored seed germination.Fresh seeds of seven of the eight species tested had a higher germination rates under 12/12 h light/dark fluctuations than did those exposed to total darkness.Storage reduced light sensitivity in Halocnemum strobilaceum,Suaeda aegyptiaca,Salsola drummondii and Salsola imbricata,but increased the requirement for light in Arthrocnemum macrostachyum.In Anabasis setifera,storage decreased germination percentage when there was a 12-hour light/dark fluctuation,but increased germination rate when exposed to the dark treatment.Storage significantly reduced germination in both the light/dark and dark treatments in Suaeda vermiculata and S.aegyptiaca.Germination speed also responded differently to storage;whereas Timson's index significantly increased in A.macrostachyum and H.strobilaceum,it significantly decreased for S.drummondii,S.aegyptiaca and S.vermiculata.Germination of these species at a range of temperatures requires further testing;additionally,we strongly suggest that these laboratory findings be complemented by field studies.

Palm Forest Landscape in Castillos (Rocha, Uruguay): Contributions to the Design of a Conservation Area

Butia palm forests are considered unique due to their aesthetic value, high biodiversity level and historical, archaeological and cultural value. The lack of regeneration of butia palms caused by cattle overgrazing and natural grasslands replacement by agriculture endangers these palm forests. The aim of this work is to provide information for the proposal of a conservation area in this rural landscape within the framework of sustainable development. This work was developed within the context of a Geographic Information System with thematic information on palm forest density levels, soils, land use aptitude and rural registers. Field surveys were conducted to record the presence of plant species and genetic resources in different vegetation units. The main category of soil cover was natural grasslands, followed by native forests, wetlands and palm forests. Palm forests grow mainly on soil units with poor to rather poor drainage and on arable or non-arable lands under special conditions. We identified 212 farms where the palm forest is found, a high diversity of vegetation units, the presence of 302 native taxa of plants and a significant number of plant genetic resources for various uses. For the designation of a conservation area, we propose 20 priority farms that will ensure that palm forests are well represented regarding ecosystem diversity. We consider the creation of a Protected Landscape, a State Park or a GIAHS to be the best alternatives so as to protect this unique multifunctional landscape.

Study on Safety and Stability Evaluation of Waste Disposal Field of a Hydropower Station Based on <i>In Situ</i>Monitoring

Reasonable site selection, blocking to meet design standards, interception and drainage and other protective measures are the basic conditions for not causing disaster in slag disposal site. A hydropower station is located in mountainous area, the amount of slag abandoned is large, the grade of slag disposal field is high, and the site selection is difficult. On the basis of in Situ deformation monitoring, the slope stability of slag disposal site is calculated by Swedish arc method through the analysis of the scale, grade, site selection, surrounding environment, cut and discharge, blocking and protection design standards of slag disposal site. Under normal and abnormal operating conditions, the slope stability of slag disposal site meets the requirements of the code, and the results of in Situ deformation monitoring verify the calculation results of slope stability of slag disposal site by Swedish circular arc method.

The Alpine Seed Conservation and Research Network–a new initiative to conserve valuable plant species in the European Alps

Safeguarding plants as seeds in ex situ collections is a cost effective element in an integrated plant conservation approach.The European Alps are a regional centre of plant diversity.Six institutions have established a regional network covering the European Alps which will conserve at least 500 priority plant species and which will improve the conservation status of plant species in grassland communities in the subalpine,alpine and nival altitudinal belts.Targeted research will expand the knowledge of the ecology of target species.Public engagement activities will raise the awareness for the importance of specific conservation actions in the European Alps.

Effects of ex situ conservation on diversity and function of the gut microbiota of the Tibetan wild ass(Equus kiang)

Ex situ conservation is the main method for the protection of endangered wildlife.To explore the effect of ex situ conservation on the gut microbiota of the kiang(Equus kiang),metagenomic sequencing combined with bioinformatics analysis was used to investigate the composition and function of the gut microbiota of the kiang.The results showed that ex situ conservation not only protected wildlife,but also affected the composition and function of gut microbiota,as well as the health of animals.In the zoo,the ratio of the relative abundance of Firmicutes to that of Bacteroidetes(F/B)is higher,clusters of potentially pathogenic bacteria(such as Catonella,Catonella,and Mycoplasma)are more numerous,the abundance of resistance genes is higher,and the abundance of metabolic functions is increased.The dynamic changes of the gut microbiota also played an important role in the nutritional absorption,energy metabolism,and environmental adaptation of the kiang.Improving the rearing environment and increasing food diversity play important roles for increasing the diversity of gut microbiota,reducing the spread of potentially pathogenic bacteria,and reducing diseases.In the wild,especially in winter and in food-deficient areas,food supplementation can enhance the gut microbial homeostasis of wild animals and reduce the impact of crises.In depth studies of the gut microbial function of wildlife have important implications for improving ex situ conservation.

Plant species with extremely small populations(PSESP) in China:A seed and spore biology perspective

Approximately one fifth of the world's plants are at risk of extinction.Of these,a significant number exist as populations of few individuals,with limited distribution ranges and under enormous pressure due to habitat destruction.In China,these most-at-risk species are described as 'plant species with extremely small populations'(PSESP).Implementing conservation action for such listed species is urgent.Storing seeds is one of the main means of ex situ conservation for flowering plants.Spore storage could provide a simple and economical method for fern ex situ conservation.Seed and spore germination in nature is a critical step in species regeneration and thus in situ conservation.But what is known about the seed and spore biology(storage and germination) of at-risk species? We have used China's PSESP(the first group listing) as a case study to understand the gaps in knowledge on propagule biology of threatened plant species.We found that whilst germination information is available for 28 species(23%of PSESP),storage characteristics are only known for 8%of PSESP(10 species).Moreover,we estimate that 60%of the listed species may require cryopreservation for long-term storage.We conclude that comparative biology studies are urgently needed on the world's most threatened taxa so that conservation action can progress beyond species listing.

A study on population genetic structure of Oryza meyeriana (Zoll. et Mor. ex Steud.) Baill. from Yunnan and its in situ conservation significance

In order to determine genetic diversity of Oryza meyeriana (Zoll. et Mor. ex Steud. ) Baill., 12 enzyme systems encoded by 17 loci were electrophoretically analyzed in 164 individuals of seven populations from Simao Prefecture, Yunnan Province, China. In comparison with those seed plants with the same life history and breeding systems, as well as the other species in the genus Oryza, the species shows rather low levels of genetic diversity (A = 1.1, P = 8.0%, Ho = 0.004 and He = 0. 015) within populations and high genetic differentiation among populations. FST was up to 0. 649, suggesting that 64. 9% of total genetic variability exists among populations. Considering high genetic differentiation among populations from a limited geographic region, most of the populations of the species are worth being protected, and therefore, great natural protection regions should theoretically be established in which a great deal of populations should be involved for developing in situ conservation management.

统筹植物就地保护与迁地保护的解决方案:植物并地保护(parallel situ conservation)

本文系统地梳理了植物就地保护和迁地保护存在的问题,尤其是因气候变化等原因导致就地保护存在的不确定性、迁地保护居群遗传多样性丧失、遗传漂变导致的一系列遗传风险等,进而提出了植物并地保护(parallel situ conservation)的概念及方法。并地保护是依据植物居群间的基因流动态规律进行保护物种的迁地保育设计,其核心是受保护物种通过居群间花粉传播的基因流连接自然居群与迁地保护居群。并地保护就是在自然保护区等就地保护区域内或周边花粉可传播范围内,建立植物迁地保育圃,使迁地保护居群与自然居群之间维持基因交流,即:将迁地保护小居群融入自然大居群的基因池并有效维持物种的适应性进化潜能。深入的“一种一策”的花粉流检测和保育圃设计是该方法成功的关键。并地保护与其他植物保护途径相互补充,对实现生物多样性保护具有重要意义。

Conservation of endangered animals: From biotechnologies to digital preservation

In the recent years, the number of endangered animals, both referred to livestock and wild species, has grown enormously. The “livestock” term refers to animals domesticated for producing commodities for man such as food, fiber and draught. Livestock biodiversity is integral to our culture, history, environment, and economy. Thousands of livestock breeds have evolved over time to suit particular environments and farming systems. Conservation and analyses of these genetic resources rely on demographic characterization and correct breeding schemes. In addition, molecular genetic studies allow to identify and monitor the genetic diversity within and across breeds and to reconstruct their evolution history. The conservation of livestock variability is also a crucial element in order to preserve and valorise specific nutritional and nutraceutical properties of animal products. Efficient ex situ and in situ conservation strategies, as well as the creation of bio-banks and specific biotechnological and bioinformatics tools for genetic analyses and digital preservation, are obligatory requirements in order to implement an appropriate action for the conservation of animal biodiversity. The main issues concerning different species are summarised, with particular reference to the livestock biodiversity still existing. Some examples of ex situ conservation strategies, which mainly refer to cryoconservation of semen, ova, embryos or tissues, developed in Italy, are presented, and the different actions in defense of Animal Genetic Resources (AnGR) developed within the European Community are illustrated. Interestingly, the same strategies for biological and digital analyses and preservation of livestock biodiversity can be exported to wild endangered animals in order to plan a correct conservation and repopulation of the species. Furthermore, the European Union has set up the guidelines to safeguard the biodiversity and to combat the extinction of animal species, and has made the protection of biodiversity and ecosystems one of the main objectives of the Sixth Environment Action Programme.

Former Botanical Garden of ORSTOM(Côte d’Ivoire):What Remain after Thirty Years of Abandonment and Forest Restoration

Botanical gardens represent important places for ex situ conservation.One of these botanical gardens has been abandoned in Côte d’Ivoire for 30 years.This is the former botanical garden of ORSTOM.This study was conducted to determine the level of diversity of this former garden in order to assess the opportunity for its rehabilitation.The authors carried out inventories in 18 quadrats of 500 m2 through the vegetation to collect woody species.Dendrometric measurements(height,diameter)were also recorded to assess the structure of the site.A total of 190 species have been identified.They belong to 141 genera and 47 families.This former botanical garden contains important species because of their origin,status or particularity(threatened,endemic,rarity,etc.).A total of 19 threatened species including 2 endangered and west African endemic(Chrysophyllum azaguieanum J.Miège,Placodiscus pseudostipularis)were found at the site.Also,Chrysophyllum azaguieanum is declared extinct from Côte d’Ivoire.Four species are rare in the flora of Côte d’Ivoire:Balanites wilsoniana,Chrysophyllum azaguieanum,Gilletiodendron kisantuense and Loesenera kalantha.The most abundant species is Hopea odorata.Although this introduced species is considered globally vulnerable,it presents a risk of invasion in the forest of Côte d’Ivoire.The diameter and height structures show that all the stages of development are presented indicating a good regeneration on the site.Ultimately,this botanical garden deserves to be rehabilitated and especially urgent management of Hopea odorata is needed to prevent an invasion of this species.