The D2 variable region of 28S ribosomal RNA was sequenced from ethanol specimens or obtained from the literature to provide the first phylogenetic reconstruction of the subfamily Euphorinae (Hymenoptera: Braconidae). ...The D2 variable region of 28S ribosomal RNA was sequenced from ethanol specimens or obtained from the literature to provide the first phylogenetic reconstruction of the subfamily Euphorinae (Hymenoptera: Braconidae). Phylogenetic relationships were established by comparing the results using two different methods (distance-based neighbor-joining, NJ; and maximum parsimony, MP) and three different outgroups. The monophyly of the Euphorinae is well supported by all trees generated from molecular data. All phylogenetic reconstructions yielded trees with very similar topologies that only partially resolved the morphologically defined tribes and the relationships within the subfamily. We found no evidence for the monophyletic natures of the tribes Euphorini, Dinocampini, Perilitini, Syntretini, Comsophorini and Centisitini, but we did find some evidence for the tribes Meteorini and Microctonini. The monophyletic nature of the tribe Meteorini was well-supported in all trees. We also found the clade containing the Lecythodella, Microctonus, Orionis and Streblocera to be a monophyletic group, which corresponded to the tribe Microtonini, with Orionis transferred from the tribe Euphorini into Microtonini. Among the genera of Euphorini our results showed strong support for a paraphyletic nature of this group, which can be roughly divided into two clades, one consisting of Aridelus + Wesmaelia, the other of Leiophron + Peristenus, suggesting both of which may be given tribal rank. The placement of the genus Chrysopophorus is largely uncertain. Two clades, Dinocampus + Perilitus and Cosmophorus + Rhopalophorus, were constantly resolved in our analyses, with 42-96 and 97-100 bootstrap value support, respectively, suggesting that both of them form monophyletic groups. For members of the Centistini, Pygostolus may be removed and included in Microctonini or other relative tribe.展开更多
Many studies have demonstrated the impact of UGT1A1 on toxicity of irinotecan. In particular, patients bear-ing UGT1A1*28 (TA 7/7) have a higher risk of severe neutropenia and diarrhea. Based on this, prescribers of i...Many studies have demonstrated the impact of UGT1A1 on toxicity of irinotecan. In particular, patients bear-ing UGT1A1*28 (TA 7/7) have a higher risk of severe neutropenia and diarrhea. Based on this, prescribers of irinotecan are advised that patients with UGT1A1*28 (TA 7/7) should start with a reduced dose of irinotecan, although a particular dose is not specified. Research in Asian countries has shown a lower incidence of UG-T1A1*28 (TA 7/7), while UGT1A1*6 (A/A) is more often found and is associated with severe irinotecan-related neutropenia. We report here a case of a metastatic colorectal cancer patient who is heterozygous for the UGT1A1*28 polymorphism (TA 6/7) as well as the UG-T1A1*6 polymorphism (G/A). The patient was treated with FOLFIRI for 9 cycles and underwent two irinote-can dose reductions according to pharmacokinetic data regarding exposure to the active metabolite, SN-38. Simultaneous heterozygous UGT1A1*28 and UGT1A1*6 polymorphisms may produce higher exposure to SN-38 and a higher risk of adverse effects related to irinote-can. Additional studies will be necessary to determine the optimal starting dose of irinotecan for patients with both UGT1A1*28 and UGT1A1*6 polymorphisms.展开更多
A 28-year best track dataset containing size parameters that include the radii of the 15.4 m s^-1 winds (R15) and the 25.7 m s^-1 winds (R26) of tropical cyclones (TCs) in the Northwestern Pacific, the NCEP/ NCA...A 28-year best track dataset containing size parameters that include the radii of the 15.4 m s^-1 winds (R15) and the 25.7 m s^-1 winds (R26) of tropical cyclones (TCs) in the Northwestern Pacific, the NCEP/ NCAR reanalysis dataset and the Extended Reconstructed Sea Surface Temperature (ERSST) dataset are employed in this study. The climatology of size parameters for the tropical cyclones in the Northwestern Pacific from 1977 to 2004 is investigated in terms of the spatial and temporal distributions. The results show that the major activity of TCs in the Northwestern Pacific is from July to October. A majority of TCs lie over the ocean west of 150°E, and a few TCs can intensify to the Saffir-Simpson (S-S) categories 4, 5. Both R15 and R26 tend to increase as the tropical cyclones intensify. The values of R15 and R26 are larger for intense TCs in the Northwestern Pacific than in the North Atlantic generally. Both R15 and R26 peak in October, and before and after October, R15 and R26 decrease, which is different from the case in the North Atlantic. The smaller R15s and R26s occur in a large range over the Northwestern Pacific, while the larger R15s and R26s mainly lie in the eastern ocean from Taiwan Island to the Philippine Islands where many tropical cyclones develop in intense systems. The tropical cyclones with size parameters of R15 or R26 on average take a longer time to intensify than to weaken, and the weak tropical cyclones have faster weakening rates than intensification rates. From 1977 to 2004, the annual mean values of R15 increase basically with year; during the 28-year period, the value of R15 increases by 52.7 kin, but R26 does not change with year obviously.展开更多
AIM: To investigate the expression of p28/gankyringene and its role in the carcinogenetic process of humanhepatocellular carcinoma (HCC).METHODS: 64 specimens of HCC and para-carcinomatissues, 22 specimens of non-tumo...AIM: To investigate the expression of p28/gankyringene and its role in the carcinogenetic process of humanhepatocellular carcinoma (HCC).METHODS: 64 specimens of HCC and para-carcinomatissues, 22 specimens of non-tumor liver tissues (7normal, 15 cirrhosis), 10 specimens of normal humantissues and 5 hepatoma cell lines were studied for theexpression of p28/gankyrin by Northern blot. Theexpression of p28/gankyrin protein was detectedimmunohistochemically by using the specificpolyclonal antibody. RESULTS: Northern blot analysis indicated that theexpression of p28/gankyrin mRNA was intensivelydistributed in brain and heart, weakly in lung, spleenand muscle, undetectable in digestive system includingliver, pancreas, stomach, small and large intestines.p28/gankyrin mRNA was absent in normal liver, weaklydetected in liver cirrhosis and in 18 of 64 para-carcinoma liver tissues. In contrast, the expression ofp28/gankyrin mRNA was intensively detected in ali 5hepatoma cell lines tested, markedly increased in 57of 64 and moderately increased in 5 of 64 HCC samples.In comparison with liver cirrhosis and para-carcinomaliver tissues, the average expression of p28/gankyrin mRNA in HCC was increased 3.6- (2.901+0.507 vs 0.805 + 0.252, P<0.05) and 5.2-fold (2.901 +0.507 vs 0.557+0.203, p<0.01), respectively, Inaddition, p28/gankyrin mRNA expression level washigher in HCC with portal vein tumor thrombus andmicroscopic hepatic vein involvement (P--0.021 andP=-0.047, respectively). The overexpression of p28/gankyrin protein in HCC was targeted in hepatic tumorcells, not in bile duct cells and other interstitial cells.CONCLUSION: Overexpression of p28/gankyrin in HCCplays an important role and contributes to themetastasis potential in the process of carcinogenesis.p28/gankyrin may become a specific biological tissuemarker for the pathological diagnosis of HCC.展开更多
BACKGROUND Pancreatic cancer is a major cause of cancer-related death,with a 5-year overall survival rate being below 5%.The main causes of poor prognosis in pancreatic cancer include easy metastasis,high recurrence r...BACKGROUND Pancreatic cancer is a major cause of cancer-related death,with a 5-year overall survival rate being below 5%.The main causes of poor prognosis in pancreatic cancer include easy metastasis,high recurrence rate,and robust drug resistance.Gemcitabine is a first-line drug for patients with unresectable pancreatic cancer.However,due to drug resistance,the clinical effect is not satisfactory.ADAM28 is reported as a tumor promoter in some cancers,but its role in pancreatic cancer and gemcitabine chemoresistance in pancreatic cancer has not been elucidated.AIM To identify if ADAM28 can act as an important target to reverse the gemcitabine drug resistance in pancreatic cancer.METHODS RNA-sequence analysis was applied to explore the potential targets involved in the gemcitabine of pancreatic cancer.SW1990 pancreatic cancer cells were treated with an increased dose of gemcitabine,and the mRNA levels of ADAM28 were evaluated by RT-PCR.The protein and mRNA levels of ADAM28 were confirmed in the gemcitabine resistant and parallel SW1990 cells.The ADAM28 expression was also assessed in TCGA and GEO databases,and the results were confirmed in the collected tumor and adjacent normal tissues.The overall survival(OS)rate and relapse-free survival(RFS)rate of pancreatic cancer patients with high ADAM28 level and low ADAM28 level in TCGA were evaluated with Kaplan-Meier Plotter.Furthermore,the OS rate was calculated in pancreatic cancer patients with high tumor mutation burden(TMB)and low TMB.CCK-8 assay was used to examine the effect of ADAM28 on the viability of SW1990 cells.The ADAM28 and its co-expressed genes were analyzed in the cBioPortal for cancer genomics and subjected to GSEA pathway analysis.The correlations of ADAM28 with GSTP1,ABCC1,GSTM4,and BCL2 were analyzed based on TCGA data on pancreatic cancer.RESULTS RNA-sequence analysis identified that ADAM28 was overexpressed in gemcitabine-resistant cells,and gemcitabine treatment could induce the expression of ADAM28.The mRNA and protein levels of ADAM28 were elevated in gemcitabine-resistant SW1990 cells compared with parallel cells.Also,the expression of ADAM28 was upregulated in pancreatic tumor tissues against normal pancreatic tissues.Notably,ADAM28 was highly expressed in the classical type than in the basal tumor type.Furthermore,the high expression of ADAM28 was associated with low OS and RFS rates.Interestingly,the high levels of ADAM28 was associated with a significantly lower OS rate in the high TMB patients,but not in the low TMB patients.Moreover,overexpression of ADAM28 could reduce the cell viability inhibition by gemcitabine,and knockdown of ADAM28 could enhance the proliferation inhibition by gemcitabine.The GSEA analysis showed that ADAM28 was related to the regulation of drug metabolism,and ADAM28 was significantly positively correlated with GSTP1,ABCC1,GSTM4,and BCL2.CONCLUSION This study demonstrates that ADAM28 is overexpressed in pancreatic cancer,and closely involved in the regulation of gemcitabine resistance.Overexpression of ADAM28 is a novel prognostic biomarker in pancreatic cancer.展开更多
Single nucleotide polymorphisms near the interleukin28B(IL-28B)gene have been identified as strong predictors of both spontaneous or Peg-interferon(Peg-IFN)and ribavirin(RBV)induced clearance of hepatitis C virus(HCV)...Single nucleotide polymorphisms near the interleukin28B(IL-28B)gene have been identified as strong predictors of both spontaneous or Peg-interferon(Peg-IFN)and ribavirin(RBV)induced clearance of hepatitis C virus(HCV).Several studies have shown that,in patients with genotype 1(GT-1),rs12979860 C/C and rs8099917T/T substitutions are associated with a more than twofold increase in sustained virological response rate to Peg-IFN and RBV treatment.Although new treatment regimens based on combination of DAA with or without IFN are in the approval phase,until combination regimens with a backbone of Peg-IFN will be used,we can expect that IL28B holds its importance.The clinical relevance of IL28B genotyping in treatment of patients infected with HCV genotype 2(GT-2)and 3(GT-3)remains controversial.Therefore,after a careful examination of the available literature,we analyzed the impact of IL28B in GT-2 and-3.Simple size of the studies and GT-2 and GT-3 proportion were discussed.An algorithm for the practical use of IL28B in these patients was suggested at the aim of optimizing treatment.展开更多
基金The Project was supported by the National Natural Science Foundation of China (30170120 39970099)
文摘The D2 variable region of 28S ribosomal RNA was sequenced from ethanol specimens or obtained from the literature to provide the first phylogenetic reconstruction of the subfamily Euphorinae (Hymenoptera: Braconidae). Phylogenetic relationships were established by comparing the results using two different methods (distance-based neighbor-joining, NJ; and maximum parsimony, MP) and three different outgroups. The monophyly of the Euphorinae is well supported by all trees generated from molecular data. All phylogenetic reconstructions yielded trees with very similar topologies that only partially resolved the morphologically defined tribes and the relationships within the subfamily. We found no evidence for the monophyletic natures of the tribes Euphorini, Dinocampini, Perilitini, Syntretini, Comsophorini and Centisitini, but we did find some evidence for the tribes Meteorini and Microctonini. The monophyletic nature of the tribe Meteorini was well-supported in all trees. We also found the clade containing the Lecythodella, Microctonus, Orionis and Streblocera to be a monophyletic group, which corresponded to the tribe Microtonini, with Orionis transferred from the tribe Euphorini into Microtonini. Among the genera of Euphorini our results showed strong support for a paraphyletic nature of this group, which can be roughly divided into two clades, one consisting of Aridelus + Wesmaelia, the other of Leiophron + Peristenus, suggesting both of which may be given tribal rank. The placement of the genus Chrysopophorus is largely uncertain. Two clades, Dinocampus + Perilitus and Cosmophorus + Rhopalophorus, were constantly resolved in our analyses, with 42-96 and 97-100 bootstrap value support, respectively, suggesting that both of them form monophyletic groups. For members of the Centistini, Pygostolus may be removed and included in Microctonini or other relative tribe.
基金Supported by National Natural Science Foundation Project,Grants No.30971579Capital Development Foundation,No.2007-2029
文摘Many studies have demonstrated the impact of UGT1A1 on toxicity of irinotecan. In particular, patients bear-ing UGT1A1*28 (TA 7/7) have a higher risk of severe neutropenia and diarrhea. Based on this, prescribers of irinotecan are advised that patients with UGT1A1*28 (TA 7/7) should start with a reduced dose of irinotecan, although a particular dose is not specified. Research in Asian countries has shown a lower incidence of UG-T1A1*28 (TA 7/7), while UGT1A1*6 (A/A) is more often found and is associated with severe irinotecan-related neutropenia. We report here a case of a metastatic colorectal cancer patient who is heterozygous for the UGT1A1*28 polymorphism (TA 6/7) as well as the UG-T1A1*6 polymorphism (G/A). The patient was treated with FOLFIRI for 9 cycles and underwent two irinote-can dose reductions according to pharmacokinetic data regarding exposure to the active metabolite, SN-38. Simultaneous heterozygous UGT1A1*28 and UGT1A1*6 polymorphisms may produce higher exposure to SN-38 and a higher risk of adverse effects related to irinote-can. Additional studies will be necessary to determine the optimal starting dose of irinotecan for patients with both UGT1A1*28 and UGT1A1*6 polymorphisms.
文摘A 28-year best track dataset containing size parameters that include the radii of the 15.4 m s^-1 winds (R15) and the 25.7 m s^-1 winds (R26) of tropical cyclones (TCs) in the Northwestern Pacific, the NCEP/ NCAR reanalysis dataset and the Extended Reconstructed Sea Surface Temperature (ERSST) dataset are employed in this study. The climatology of size parameters for the tropical cyclones in the Northwestern Pacific from 1977 to 2004 is investigated in terms of the spatial and temporal distributions. The results show that the major activity of TCs in the Northwestern Pacific is from July to October. A majority of TCs lie over the ocean west of 150°E, and a few TCs can intensify to the Saffir-Simpson (S-S) categories 4, 5. Both R15 and R26 tend to increase as the tropical cyclones intensify. The values of R15 and R26 are larger for intense TCs in the Northwestern Pacific than in the North Atlantic generally. Both R15 and R26 peak in October, and before and after October, R15 and R26 decrease, which is different from the case in the North Atlantic. The smaller R15s and R26s occur in a large range over the Northwestern Pacific, while the larger R15s and R26s mainly lie in the eastern ocean from Taiwan Island to the Philippine Islands where many tropical cyclones develop in intense systems. The tropical cyclones with size parameters of R15 or R26 on average take a longer time to intensify than to weaken, and the weak tropical cyclones have faster weakening rates than intensification rates. From 1977 to 2004, the annual mean values of R15 increase basically with year; during the 28-year period, the value of R15 increases by 52.7 kin, but R26 does not change with year obviously.
基金the Chinese National Distinguished Young Scholar Awards,No.39825114Chinese National Key Project of Basic Research,No.G1998051210the Key Project of the Chinese National Natural Science Foundation,No.39830080.
文摘AIM: To investigate the expression of p28/gankyringene and its role in the carcinogenetic process of humanhepatocellular carcinoma (HCC).METHODS: 64 specimens of HCC and para-carcinomatissues, 22 specimens of non-tumor liver tissues (7normal, 15 cirrhosis), 10 specimens of normal humantissues and 5 hepatoma cell lines were studied for theexpression of p28/gankyrin by Northern blot. Theexpression of p28/gankyrin protein was detectedimmunohistochemically by using the specificpolyclonal antibody. RESULTS: Northern blot analysis indicated that theexpression of p28/gankyrin mRNA was intensivelydistributed in brain and heart, weakly in lung, spleenand muscle, undetectable in digestive system includingliver, pancreas, stomach, small and large intestines.p28/gankyrin mRNA was absent in normal liver, weaklydetected in liver cirrhosis and in 18 of 64 para-carcinoma liver tissues. In contrast, the expression ofp28/gankyrin mRNA was intensively detected in ali 5hepatoma cell lines tested, markedly increased in 57of 64 and moderately increased in 5 of 64 HCC samples.In comparison with liver cirrhosis and para-carcinomaliver tissues, the average expression of p28/gankyrin mRNA in HCC was increased 3.6- (2.901+0.507 vs 0.805 + 0.252, P<0.05) and 5.2-fold (2.901 +0.507 vs 0.557+0.203, p<0.01), respectively, Inaddition, p28/gankyrin mRNA expression level washigher in HCC with portal vein tumor thrombus andmicroscopic hepatic vein involvement (P--0.021 andP=-0.047, respectively). The overexpression of p28/gankyrin protein in HCC was targeted in hepatic tumorcells, not in bile duct cells and other interstitial cells.CONCLUSION: Overexpression of p28/gankyrin in HCCplays an important role and contributes to themetastasis potential in the process of carcinogenesis.p28/gankyrin may become a specific biological tissuemarker for the pathological diagnosis of HCC.
文摘BACKGROUND Pancreatic cancer is a major cause of cancer-related death,with a 5-year overall survival rate being below 5%.The main causes of poor prognosis in pancreatic cancer include easy metastasis,high recurrence rate,and robust drug resistance.Gemcitabine is a first-line drug for patients with unresectable pancreatic cancer.However,due to drug resistance,the clinical effect is not satisfactory.ADAM28 is reported as a tumor promoter in some cancers,but its role in pancreatic cancer and gemcitabine chemoresistance in pancreatic cancer has not been elucidated.AIM To identify if ADAM28 can act as an important target to reverse the gemcitabine drug resistance in pancreatic cancer.METHODS RNA-sequence analysis was applied to explore the potential targets involved in the gemcitabine of pancreatic cancer.SW1990 pancreatic cancer cells were treated with an increased dose of gemcitabine,and the mRNA levels of ADAM28 were evaluated by RT-PCR.The protein and mRNA levels of ADAM28 were confirmed in the gemcitabine resistant and parallel SW1990 cells.The ADAM28 expression was also assessed in TCGA and GEO databases,and the results were confirmed in the collected tumor and adjacent normal tissues.The overall survival(OS)rate and relapse-free survival(RFS)rate of pancreatic cancer patients with high ADAM28 level and low ADAM28 level in TCGA were evaluated with Kaplan-Meier Plotter.Furthermore,the OS rate was calculated in pancreatic cancer patients with high tumor mutation burden(TMB)and low TMB.CCK-8 assay was used to examine the effect of ADAM28 on the viability of SW1990 cells.The ADAM28 and its co-expressed genes were analyzed in the cBioPortal for cancer genomics and subjected to GSEA pathway analysis.The correlations of ADAM28 with GSTP1,ABCC1,GSTM4,and BCL2 were analyzed based on TCGA data on pancreatic cancer.RESULTS RNA-sequence analysis identified that ADAM28 was overexpressed in gemcitabine-resistant cells,and gemcitabine treatment could induce the expression of ADAM28.The mRNA and protein levels of ADAM28 were elevated in gemcitabine-resistant SW1990 cells compared with parallel cells.Also,the expression of ADAM28 was upregulated in pancreatic tumor tissues against normal pancreatic tissues.Notably,ADAM28 was highly expressed in the classical type than in the basal tumor type.Furthermore,the high expression of ADAM28 was associated with low OS and RFS rates.Interestingly,the high levels of ADAM28 was associated with a significantly lower OS rate in the high TMB patients,but not in the low TMB patients.Moreover,overexpression of ADAM28 could reduce the cell viability inhibition by gemcitabine,and knockdown of ADAM28 could enhance the proliferation inhibition by gemcitabine.The GSEA analysis showed that ADAM28 was related to the regulation of drug metabolism,and ADAM28 was significantly positively correlated with GSTP1,ABCC1,GSTM4,and BCL2.CONCLUSION This study demonstrates that ADAM28 is overexpressed in pancreatic cancer,and closely involved in the regulation of gemcitabine resistance.Overexpression of ADAM28 is a novel prognostic biomarker in pancreatic cancer.
文摘Single nucleotide polymorphisms near the interleukin28B(IL-28B)gene have been identified as strong predictors of both spontaneous or Peg-interferon(Peg-IFN)and ribavirin(RBV)induced clearance of hepatitis C virus(HCV).Several studies have shown that,in patients with genotype 1(GT-1),rs12979860 C/C and rs8099917T/T substitutions are associated with a more than twofold increase in sustained virological response rate to Peg-IFN and RBV treatment.Although new treatment regimens based on combination of DAA with or without IFN are in the approval phase,until combination regimens with a backbone of Peg-IFN will be used,we can expect that IL28B holds its importance.The clinical relevance of IL28B genotyping in treatment of patients infected with HCV genotype 2(GT-2)and 3(GT-3)remains controversial.Therefore,after a careful examination of the available literature,we analyzed the impact of IL28B in GT-2 and-3.Simple size of the studies and GT-2 and GT-3 proportion were discussed.An algorithm for the practical use of IL28B in these patients was suggested at the aim of optimizing treatment.