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锦鲤疱疹病毒-CJ株ORF81基因的克隆及生物信息学分析 被引量:14
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作者 周井祥 李新伟 +2 位作者 王好 吕文亮 朱霞 《水产学报》 CAS CSCD 北大核心 2011年第12期1780-1786,共7页
为了解锦鲤疱疹病毒中国吉林株(KHV-CJ)ORF81蛋白的结构特征和进化关系,用框镜鲤尾鳍原代细胞增殖KHV-CJ,提取其DNA,经PCR扩增,获得ORF81基因,将其克隆到pMD18-T载体中,构建重组质粒。应用生物信息学方法初步分析KHV-CJ ORF81基因的结... 为了解锦鲤疱疹病毒中国吉林株(KHV-CJ)ORF81蛋白的结构特征和进化关系,用框镜鲤尾鳍原代细胞增殖KHV-CJ,提取其DNA,经PCR扩增,获得ORF81基因,将其克隆到pMD18-T载体中,构建重组质粒。应用生物信息学方法初步分析KHV-CJ ORF81基因的结构和功能,并与GenBank上已公布的3株KHV构建系统进化树。结果显示,获得了长771 bp的ORF81基因,编码256个氨基酸;预测ORF81基因的理论分子量为28 246.50 u,等电点为8.404;疏水性大于亲水性;信号肽切割部位最可能位于29位的S(丝氨酸);有4个跨膜区;抗原表位预测显示抗原性良好;结构预测显示,不存在N-糖基化位点、存在6个O-糖基化位点和11个磷酸化位点;系统进化树分析显示,与锦鲤疱疹病毒以色列株属同一分支。 展开更多
关键词 锦鲤疱疹病毒 ORF81基因 克隆测序 生物信息学分析
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The Structural Proteins of Bdellovibrio bacteriovorus Bacteriophage MAC-1
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作者 Rajinder S. Ranu Renee Gallegos +1 位作者 Mary Althauser Lisa Wolfe 《World Journal of Engineering and Technology》 2016年第3期7-13,共8页
In the present investigation the structural proteins associated with MAC-1 bacteriophage have been characterized using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE);tandem mass spectrometry of p... In the present investigation the structural proteins associated with MAC-1 bacteriophage have been characterized using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE);tandem mass spectrometry of protein bands from SDS-PAGE gel;from the open reading frames (ORFs) deduced from MAC-1 genome sequence and amino acid sequence homology searches from the Uniprot database (up000002418). Results have led to the identification of at least three structural proteins associated with MAC-1 phage genome. They are: capsid protein (~55,000-daltons);spike protein (~22,000-daltons) and a low molecular weight DNA binding protein (~4000-dal- tons). In addition, two other minor proteins were tentatively identified as replicative and scaffold proteins based on two to three unique peptides from mass spectrometry data. However, other proteins coded (ORFs) by phage genome remain to be identified. 展开更多
关键词 Bdellovibrio bacteriovorus Bacteriophage MAC-1 Phage Structural Proteins MAC-1 Genome MAC-1 genes (ORFs)
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