Populus alba × P.glandulosa clone 84 K,derived from South Korea,is widely cultivated in China and used as a model in the molecular research of woody plants because of hi gh gene transformation efficiency.Here,we ...Populus alba × P.glandulosa clone 84 K,derived from South Korea,is widely cultivated in China and used as a model in the molecular research of woody plants because of hi gh gene transformation efficiency.Here,we combined63-fold coverage Illumina short reads and 126-fold coverage PacBio long reads to assemble the genome.Due to the hi gh heterozygosity level at 2.1% estimated by k-mer analysis,we exploited TrioCanu for genome assembly.The PacBio clean subreads of P.alba × P.glandulosa were separated into two parts according to the similarities,compared with the parental genomes of P.alba and P.glandulosa.The two parts of the subreads were assembled to two sets of subgenomes comprising subgenome A(405.31 Mb,from P.alba)and subgenome G(376.05 Mb,from P.glandulosa) with the contig N50 size of 5.43 Mb and 2.15 Mb,respectively.A high-quality P.alba × P.glandulosa genome assembly was obtained.The genome size was 781.36 Mb with the contig N50 size of 3.66 Mb and the longest contig was 19.47 Mb.In addition,a total of 176.95 Mb(43.7%),152.37 Mb(40.5%)of repetitive elements were identified and a total of 38,701 and 38,449 protein-coding genes were predicted in subgenomes A and G,respectively.For functional annotation,96.98% of subgenome A and 96.96% of subgenome G genes were annotated with public databases.This de novo assembled genome will facilitate systematic and comprehensive study,such as multi-omics analysis,in the model tree P.alba X P.glandulosa.展开更多
Laboratory feeding experiments with the poplar aphid, Chaitophorus populeti (Panzer), feeding on transgenic poplar (P. alba × P. glandulosa) varieties C13-5 and C013-5, were carried out to study the effect of...Laboratory feeding experiments with the poplar aphid, Chaitophorus populeti (Panzer), feeding on transgenic poplar (P. alba × P. glandulosa) varieties C13-5 and C013-5, were carried out to study the effect of transgenic poplar on the ladybird Harmonia axyridis (Pallas). The mortality and development time of the immature stages, the eclosion rate and body mass of H. axyridis were measured. The results indicated that C. populeti feeding on different varieties of transgenic plants had no statistically significant ef- fect on the mortality ofH. axyridis larvae. The development time of larval and pupal stages were not significantly different between the two transgenic poplars and a non-transgenic poplar. Furthermore, the body mass and eclosion rate did not show any difference between the H. axyridis feeding on aphids reared on transgenic plants and those from non-transgenic plants. It is suggested that transgenic plants have no deleterious effect on the predatory ladybird.展开更多
Although pruning is important to obtain highquality,large-diameter timber,the effects of pruning on nonstructural carbohydrates(NSC)in aboveground organs of many timber species are not well understood.Three intensitie...Although pruning is important to obtain highquality,large-diameter timber,the effects of pruning on nonstructural carbohydrates(NSC)in aboveground organs of many timber species are not well understood.Three intensities of pruning(none,moderate and severe)were tested on poplars(Populus alba×P.talassica)in the arid desert region of northwest China to compare the concentrations of soluble sugar(SS),starch(ST)and total nonstructural carbohydrate(TNC)in leaves,branches and trunks during the growing season.The concentration of NSC components after different pruning intensities varied similarly in seasonal patterns,increasing slowly at the beginning of the growing season,continuously declining in the middle,then gradually recovering by the end of the growing season.The monthly mean NSC concentration in poplar differed significantly among the three pruning intensities(p<0.05).The SS concentration in pruned trees was higher than in unpruned trees(p<0.05).For moderately pruned trees,the concentrations of ST and TNC in trunks and branches were higher than in unpruned and in severely pruned trees(p<0.05).Compared with no pruning,pruning changed the seasonal variation in NSC concentration.The orders of SS and TNC concentrations in aboveground organs were leaf>branch>trunk,while the order of ST concentration was trunk>leaf>branch,which was related to functional differences of plant organs.The annual average growth in height of unpruned,moderately pruned,and severely pruned poplars was 0.21±0.06,0.45±0.09 and 0.24±0.05 m,respectively,and the annual average growth in DBH were 0.92±0.04,1.27±0.06 and 1.02±0.05 cm,respectively.Our results demonstrate that moderate pruning may effectively increase the annual growth in tree height and DBH while avoiding damage caused by excessive pruning to the tree body.Therefore,moderate pruning may increase the NSC storage and improve the growth of timber species.展开更多
We used a salt-resistant poplar genotype Populus euphratica and two salt-sensitive genotypes, Populus 'popularis 35-44' (P. popularis) and the hybrid P. talassica Kom x (P. euphratica + Salix alba L.) to exami...We used a salt-resistant poplar genotype Populus euphratica and two salt-sensitive genotypes, Populus 'popularis 35-44' (P. popularis) and the hybrid P. talassica Kom x (P. euphratica + Salix alba L.) to examine genotypic differences in nutrient selectivity under NaCl stress. One-year-old seedlings of P. euphratica and one-year-old hardwood cuttings of P. popularis were used in a short-term study (24 hours), while in a long-term study, up to 4 weeks, two-year-old seedlings of P. euphratica and the hybrid P. talassica Kom x (P. euphratica + Salix alba L.) were compared. In the short-term study, K+ concentration in the xylem sap ([K+]xylem) of P. euphratica significantly increased after salt stress was initiated, and maintained 1-2 fold higher than control levels during the period of salt stress (24 hours). Xylem Ca2+ and Mg2+ concentrations ([Ca2+]xylem, [Mg2+]xylem) in P. euphratica resembled the pattern of K+ despite a lesser magnitude in elevation. However, [K+]xylem, [Ca2+]xylem and [Mg2+]xylem in P. popularis exhibited a transient increase at the beginning of salt treatment, thereafter, they all returned to control levels at 4 hours and no further rise was observed in the following hours. Xylem Na+/K+, Na+/Ca2+ and Na+/Mg2+ in P. popularis increased sharply upon NaCl stress and steadily reached the maximum at 24 hours. In contrast, xylem Na+/K+, Na+/Ca2+ and Na+/Mg2+ in NaCl-treated plants of P. euphratica did not significantly increase during the period of salt stress (24 hours). Noteworthy, Na+/K+ markedly declined after the onset of stress. These results suggest that P. euphratica had a higher nutrient selectivity in face of salinity. A same trend was observed in a 4-week study. Xylem Na+/K+, Na+/Ca2+ and Na+/Mg2+ in salinised plants of the hybrid abruptly increased after 4 days of stress, and then continuously increased to reach the highest level at day 8 or day 15. In comparison, the magnitude of Na+/K+, Na+/Ca2+ and Na+/Mg2+ elevation in the xylem of P. euphratica was much lower during the observation period. In conclusion, salt-tolerant genotype P. euphratica maintained a higher nutrient selectivity under saline stress, as compared to the two salt-sensitive genotypes. The high capacity for nutrient uptake and transport presumably contributes to the salt tolerance of P. euphratica in a longer term.展开更多
In this study,genetic stability of foreign genes was checked by using PCR technology. A total of 4 lines of soil samples from transgenic and non-transgenic control Populus alba×P.glandulosa and the soil samples f...In this study,genetic stability of foreign genes was checked by using PCR technology. A total of 4 lines of soil samples from transgenic and non-transgenic control Populus alba×P.glandulosa and the soil samples from the stands were collected in two successive years,and the bacteria,fungi and antinomyces were isolated by using flat dilution method to determine their quantities. The results demonstrated that target genes were stable present in the genome of transgenic poplar. We found that three kinds of soil microorganism appeared different trends within different months and different years. The ANOVA and multiple comparison analyses revealed that there was no significant difference in quantity of the soil microorganisms among most poplar lines at the same time point. Meanwhile,significant differences of the soil microorganism community were found among several transgenic lines,and between a few transgenic and non-transgenic lines,but they did not show any relation to the type and number of foreign genes. Our preliminary results indicated that the 2-year-old transgenic poplar growing in field had no significant effects on soil microorganisms.展开更多
基金supported by grants CAFYBB2017ZY001 and TGB2016001 from Fundamental Research Funds of the Chinese Academy of Forestry。
文摘Populus alba × P.glandulosa clone 84 K,derived from South Korea,is widely cultivated in China and used as a model in the molecular research of woody plants because of hi gh gene transformation efficiency.Here,we combined63-fold coverage Illumina short reads and 126-fold coverage PacBio long reads to assemble the genome.Due to the hi gh heterozygosity level at 2.1% estimated by k-mer analysis,we exploited TrioCanu for genome assembly.The PacBio clean subreads of P.alba × P.glandulosa were separated into two parts according to the similarities,compared with the parental genomes of P.alba and P.glandulosa.The two parts of the subreads were assembled to two sets of subgenomes comprising subgenome A(405.31 Mb,from P.alba)and subgenome G(376.05 Mb,from P.glandulosa) with the contig N50 size of 5.43 Mb and 2.15 Mb,respectively.A high-quality P.alba × P.glandulosa genome assembly was obtained.The genome size was 781.36 Mb with the contig N50 size of 3.66 Mb and the longest contig was 19.47 Mb.In addition,a total of 176.95 Mb(43.7%),152.37 Mb(40.5%)of repetitive elements were identified and a total of 38,701 and 38,449 protein-coding genes were predicted in subgenomes A and G,respectively.For functional annotation,96.98% of subgenome A and 96.96% of subgenome G genes were annotated with public databases.This de novo assembled genome will facilitate systematic and comprehensive study,such as multi-omics analysis,in the model tree P.alba X P.glandulosa.
基金supported by the National Premier Special Funds for Study and Industrialization of Transgenic Plants (J2002-B-004)the National Natural Science and Technology Support Plan of China "the technology researchdemonstration of forestry-paper integrate project" (Grant No. 2006BAD32B)
文摘Laboratory feeding experiments with the poplar aphid, Chaitophorus populeti (Panzer), feeding on transgenic poplar (P. alba × P. glandulosa) varieties C13-5 and C013-5, were carried out to study the effect of transgenic poplar on the ladybird Harmonia axyridis (Pallas). The mortality and development time of the immature stages, the eclosion rate and body mass of H. axyridis were measured. The results indicated that C. populeti feeding on different varieties of transgenic plants had no statistically significant ef- fect on the mortality ofH. axyridis larvae. The development time of larval and pupal stages were not significantly different between the two transgenic poplars and a non-transgenic poplar. Furthermore, the body mass and eclosion rate did not show any difference between the H. axyridis feeding on aphids reared on transgenic plants and those from non-transgenic plants. It is suggested that transgenic plants have no deleterious effect on the predatory ladybird.
基金supported by Key Projects of Universities for Foreign Cultural and Educational Experts Employment Plan in 2018(T2018013)granted from Special Funds for Sustainable Development of Science and Technology Platform for Fundamental Research Business Expenses of Central Universities(2572018CP05).
文摘Although pruning is important to obtain highquality,large-diameter timber,the effects of pruning on nonstructural carbohydrates(NSC)in aboveground organs of many timber species are not well understood.Three intensities of pruning(none,moderate and severe)were tested on poplars(Populus alba×P.talassica)in the arid desert region of northwest China to compare the concentrations of soluble sugar(SS),starch(ST)and total nonstructural carbohydrate(TNC)in leaves,branches and trunks during the growing season.The concentration of NSC components after different pruning intensities varied similarly in seasonal patterns,increasing slowly at the beginning of the growing season,continuously declining in the middle,then gradually recovering by the end of the growing season.The monthly mean NSC concentration in poplar differed significantly among the three pruning intensities(p<0.05).The SS concentration in pruned trees was higher than in unpruned trees(p<0.05).For moderately pruned trees,the concentrations of ST and TNC in trunks and branches were higher than in unpruned and in severely pruned trees(p<0.05).Compared with no pruning,pruning changed the seasonal variation in NSC concentration.The orders of SS and TNC concentrations in aboveground organs were leaf>branch>trunk,while the order of ST concentration was trunk>leaf>branch,which was related to functional differences of plant organs.The annual average growth in height of unpruned,moderately pruned,and severely pruned poplars was 0.21±0.06,0.45±0.09 and 0.24±0.05 m,respectively,and the annual average growth in DBH were 0.92±0.04,1.27±0.06 and 1.02±0.05 cm,respectively.Our results demonstrate that moderate pruning may effectively increase the annual growth in tree height and DBH while avoiding damage caused by excessive pruning to the tree body.Therefore,moderate pruning may increase the NSC storage and improve the growth of timber species.
基金Foundation for the Author of National Excellent Doctoral Dissertation of PRC (Grant No. 200152)the Teaching and Research Award Program for Outstanding Young Teachers in Higher Education Institution of MOE, PRC, the National Nat
文摘We used a salt-resistant poplar genotype Populus euphratica and two salt-sensitive genotypes, Populus 'popularis 35-44' (P. popularis) and the hybrid P. talassica Kom x (P. euphratica + Salix alba L.) to examine genotypic differences in nutrient selectivity under NaCl stress. One-year-old seedlings of P. euphratica and one-year-old hardwood cuttings of P. popularis were used in a short-term study (24 hours), while in a long-term study, up to 4 weeks, two-year-old seedlings of P. euphratica and the hybrid P. talassica Kom x (P. euphratica + Salix alba L.) were compared. In the short-term study, K+ concentration in the xylem sap ([K+]xylem) of P. euphratica significantly increased after salt stress was initiated, and maintained 1-2 fold higher than control levels during the period of salt stress (24 hours). Xylem Ca2+ and Mg2+ concentrations ([Ca2+]xylem, [Mg2+]xylem) in P. euphratica resembled the pattern of K+ despite a lesser magnitude in elevation. However, [K+]xylem, [Ca2+]xylem and [Mg2+]xylem in P. popularis exhibited a transient increase at the beginning of salt treatment, thereafter, they all returned to control levels at 4 hours and no further rise was observed in the following hours. Xylem Na+/K+, Na+/Ca2+ and Na+/Mg2+ in P. popularis increased sharply upon NaCl stress and steadily reached the maximum at 24 hours. In contrast, xylem Na+/K+, Na+/Ca2+ and Na+/Mg2+ in NaCl-treated plants of P. euphratica did not significantly increase during the period of salt stress (24 hours). Noteworthy, Na+/K+ markedly declined after the onset of stress. These results suggest that P. euphratica had a higher nutrient selectivity in face of salinity. A same trend was observed in a 4-week study. Xylem Na+/K+, Na+/Ca2+ and Na+/Mg2+ in salinised plants of the hybrid abruptly increased after 4 days of stress, and then continuously increased to reach the highest level at day 8 or day 15. In comparison, the magnitude of Na+/K+, Na+/Ca2+ and Na+/Mg2+ elevation in the xylem of P. euphratica was much lower during the observation period. In conclusion, salt-tolerant genotype P. euphratica maintained a higher nutrient selectivity under saline stress, as compared to the two salt-sensitive genotypes. The high capacity for nutrient uptake and transport presumably contributes to the salt tolerance of P. euphratica in a longer term.
文摘In this study,genetic stability of foreign genes was checked by using PCR technology. A total of 4 lines of soil samples from transgenic and non-transgenic control Populus alba×P.glandulosa and the soil samples from the stands were collected in two successive years,and the bacteria,fungi and antinomyces were isolated by using flat dilution method to determine their quantities. The results demonstrated that target genes were stable present in the genome of transgenic poplar. We found that three kinds of soil microorganism appeared different trends within different months and different years. The ANOVA and multiple comparison analyses revealed that there was no significant difference in quantity of the soil microorganisms among most poplar lines at the same time point. Meanwhile,significant differences of the soil microorganism community were found among several transgenic lines,and between a few transgenic and non-transgenic lines,but they did not show any relation to the type and number of foreign genes. Our preliminary results indicated that the 2-year-old transgenic poplar growing in field had no significant effects on soil microorganisms.