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Chemokine platelet factor 4 accelerates peripheral nerve regeneration by regulating Schwann cell activation and axon elongation 被引量:1
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作者 Miao Gu Xiao Cheng +3 位作者 Di Zhang Weiyan Wu Yi Cao Jianghong He 《Neural Regeneration Research》 SCIE CAS CSCD 2024年第1期190-195,共6页
Schwann cells in peripheral nerves react to traumatic nerve injury by attempting to grow and regenerate.Howeve r,it is unclear what factors play a role in this process.In this study,we searched a GEO database and foun... Schwann cells in peripheral nerves react to traumatic nerve injury by attempting to grow and regenerate.Howeve r,it is unclear what factors play a role in this process.In this study,we searched a GEO database and found that expression of platelet factor 4 was markedly up-regulated after sciatic nerve injury.Platelet factor is an important molecule in cell apoptosis,diffe rentiation,survival,and proliferation.Further,polymerase chain reaction and immunohistochemical staining confirmed the change in platelet factor 4 in the sciatic nerve at different time points after injury.Enzyme-linked immunosorbent assay confirmed that platelet factor 4 was secreted by Schwann cells.We also found that silencing platelet factor 4 decreased the proliferation and migration of primary cultured Schwann cells,while exogenously applied platelet factor 4 stimulated Schwann cell prolife ration and migration and neuronal axon growth.Furthermore,knocking out platelet factor 4 inhibited the prolife ration of Schwann cells in injured rat sciatic nerve.These findings suggest that Schwann cell-secreted platelet factor 4 may facilitate peripheral nerve repair and regeneration by regulating Schwann cell activation and axon growth.Thus,platelet factor 4 may be a potential therapeutic target for traumatic peripheral nerve injury. 展开更多
关键词 axon elongation bioinformatic analysis cell migration cell proliferation dorsal root ganglia peripheral nerve regeneration peripheral nerve trauma platelet factor 4 rat sciatic nerve Schwann cells
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Diagnostic and prognostic role of LINC01767 in hepatocellular carcinoma
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作者 Li Zhang Tong-Xing Cui +2 位作者 Xiang-Zhi Li Chong Liu Wen-Qin Wang 《World Journal of Hepatology》 2024年第6期932-950,共19页
BACKGROUND Hepatocellular carcinoma(HCC)is a primary contributor to cancer-related mortality on a global scale.However,the underlying molecular mechanisms are still poorly understood.Long noncoding RNAs are emerging m... BACKGROUND Hepatocellular carcinoma(HCC)is a primary contributor to cancer-related mortality on a global scale.However,the underlying molecular mechanisms are still poorly understood.Long noncoding RNAs are emerging markers for HCC diagnosis,prognosis,and therapeutic target.No study of LINC01767 in HCC was published.AIM To conduct a multi-omics analysis to explore the roles of LINC01767 in HCC for the first time.METHODS DESeq2 Package was used to analyze different gene expressions.Receiver operating characteristic curves assessed the diagnostic performance.Kaplan-Meier univariate and Cox multivariate analyses were used to perform survival analysis.The least absolute shrinkage and selection operator(LASSO)-Cox was used to identify the prediction model.Subsequent to the validation of LINC01767 expression in HCC fresh frozen tissues through quantitative real time polymerase chain reaction,next generation sequencing was performed following LINC01767 over expression(GSE243371),and Gene Ontology/Kyoto Encyclopedia of Genes and Genomes/Gene Set Enrichment Analysis/ingenuity pathway analysis was carried out.In vitro experiment in Huh7 cell was carried out.RESULTS LINC01767 was down-regulated in HCC with a log fold change=1.575 and was positively correlated with the cancer stemness.LINC01767 was a good diagnostic marker with area under the curve(AUC)[0.801,95% confidence interval(CI):0.751-0.852,P=0.0106]and an independent predictor for overall survival(OS)with hazard ratio=1.899(95%CI:1.01-3.58,P=0.048).LINC01767 nomogram model showed a satisfied performance.The top-ranked regulatory network analysis of LINC01767 showed the regulation of genes participating various pathways.LASSO regression identified the 9-genes model showing a more satisfied performance than 5-genes model to predict the OS with AUC>0.75.LINC01767 was down-expressed obviously in tumor than para-tumor tissues in our cohort as well as in cancer cell line;the over expression of LINC01767 inhibit cell proliferation and clone formation of Huh7 in vitro.CONCLUSION LINC01767 was an important tumor suppressor gene in HCC with good diagnostic and prognostic performance. 展开更多
关键词 Hepatocellular carcinoma LINC01767 Multi-omics analysis GSE243371 cell proliferation Clone formation
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Subcellular distribution of prohibitin 1 in rat liver during liver regeneration and its cellular implication
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作者 Qing-Ju Sun Tao Liu 《World Journal of Hepatology》 2024年第1期65-74,共10页
BACKGROUND The function of prohibitin 1(Phb1)during liver regeneration(LR)remains relatively unexplored.Our previous research identified downregulation of Phb1 in rat liver mitochondria 24 h after 70%partial hepatecto... BACKGROUND The function of prohibitin 1(Phb1)during liver regeneration(LR)remains relatively unexplored.Our previous research identified downregulation of Phb1 in rat liver mitochondria 24 h after 70%partial hepatectomy(PHx),as determined by subcellular proteomic analysis.AIM To investigate the potential role of Phb1 during LR.METHODS We examined changes in Phb1 mRNA and protein levels,subcellular distribution,and abundance in rat liver during LR following 70%PHx.We also evaluated mitochondrial changes and apoptosis using electron microscopy and flow cytometry.RNA-interference-mediated knockdown of Phb1(PHBi)was performed in BRL-3A cells.RESULTS Compared with sham-operation control groups,Phb1 mRNA and protein levels in 70%PHx test groups were downregulated at 24 h,then upregulated at 72 and 168 h.Phb1 was mainly located in mitochondria,showed a reduced abundance at 24 h,significantly increased at 72 h,and almost recovered to normal at 168 h.Phb1 was also present in nuclei,with continuous increase in abundance observed 72 and 168 h after 70%PHx.The altered ultrastructure and reduced mass of mitochondria during LR had almost completely recovered to normal at 168 h.PHBi in BRL-3A cells resulted in increased S-phase entry,a higher number of apoptotic cells,and disruption of mitochondrial membrane potential.CONCLUSION Phb1 may contribute to maintaining mitochondrial stability and could play a role in regulating cell proliferation and apoptosis of rat liver cells during LR. 展开更多
关键词 Prohibitin 1 Liver regeneration Subcellular proteomic analysis Mitochondrial stability cell proliferation
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Bioinformatics-based gene set enrichment and immune cell infiltration analysis of psoriasis
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作者 Yang Zhou Lu Han +5 位作者 Ru-Nan Fang Yan Zhao Yang Guo Ye Zhai Ping Li Jian-Hong Li 《Journal of Hainan Medical University》 2021年第21期48-52,共5页
Objective:Based on bioinformatics,gene set enrichment analysis(GSEA)and immune infiltration analysis were carried out on the microarray data of psoriasis expression profile to further understand the pathogenesis of ps... Objective:Based on bioinformatics,gene set enrichment analysis(GSEA)and immune infiltration analysis were carried out on the microarray data of psoriasis expression profile to further understand the pathogenesis of psoriasis.Methods:GSE6710 chip data were obtained from gene expression database(GEO),and gene ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analysis were performed using GSEA software.22 kinds of immune cell gene expression matrices and R packages were downloaded from CIBERSOFT official website,and the immune cell infiltration matrix was obtained by R software and related graphs were drawn.Results:The pathways related to cell proliferation and innate immunity were highly expressed in psoriatic lesions,and some cancer-related pathways were highly expressed in psoriatic lesions.Immunized cell infiltration analysis showed that activated memory T cells,follicular helper T cells,M0 macrophages and activated dendritic cells were up-regulated in psoriatic skin lesion group,and inactive mast cells were down-regulated in psoriatic skin lesion group.Activated dendritic cells are positively correlated with follicular helper T cells,activated mast cells are positively correlated with M0 macrophages.Inactivated mast cells are negatively correlated with activated memory T cells,M1 macrophages are negatively correlated with regulatory T cells,M0 macrophages are negatively correlated with inactive mast cells.Conclusion:Cell proliferation and innate immunity are of great significance in the pathogenesis of psoriasis.Immune cell infiltration analysis is generally consistent with the current psoriasis pathogenesis model.Macrophages and mast cells also play a certain role in psoriasis. 展开更多
关键词 PSORIASIS Gene set enrichment analysis Immune infiltration cell proliferation Maternal immunity
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Transcriptome analysis of molecular mechanisms underlying facial nerve injury repair in rats 被引量:3
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作者 Qian-Qian Cao Shuo Li +4 位作者 Yan Lu Di Wu Wei Feng Yong Shi Lu-Ping Zhang 《Neural Regeneration Research》 SCIE CAS CSCD 2021年第11期2316-2323,共8页
Although the transcriptional alterations inside the facial nucleus after facial nerve injury have been well studied,the gene expression changes in the facial nerve trunk after injury are still unknown.In this study,we... Although the transcriptional alterations inside the facial nucleus after facial nerve injury have been well studied,the gene expression changes in the facial nerve trunk after injury are still unknown.In this study,we established an adult rat model of facial nerve crush injury by compressing the right lateral extracranial nerve trunk.Transcriptome sequencing,differential gene expression analysis,and cluster analysis of the injured facial nerve trunk were performed,and 39 intersecting genes with significant variance in expression were identified.Gene Ontology annotation and Kyoto Encyclopedia of Genes and Genomes pathway analyses of the 39 intersecting genes revealed that these genes are mostly involved in leukocyte cell-cell adhesion and phagocytosis and have essential roles in regulating nerve repair.Quantitative real-time polymerase chain reaction assays were used to validate the expression of pivotal genes.Finally,nine pivotal genes that contribute to facial nerve recovery were identified,including Arhgap30,Akr1b8,C5ar1,Csf2ra,Dock2,Hcls1,Inpp5d,Sla,and Spi1.Primary Schwann cells were isolated from the sciatic nerve of neonatal rats.After knocking down Akr1b8 in Schwann cells with an Akr1b8-specific small interfering RNA plasmid,expression levels of monocyte chemoattractant protein-1 and interleukin-6 were decreased,while cell proliferation and migration were not obviously altered.These findings suggest that Akr1b8 likely regulates the interaction between Schwann cells and macrophages through regulation of cytokine expression to promote facial nerve regeneration.This study is the first to reveal a transcriptome change in the facial nerve trunk after facial nerve injury,thereby revealing the potential mechanism underlying repair of facial nerve injury.This study was approved by the Animal Ethics Committee of Nantong University,China in 2018(approval No.S20180923-007). 展开更多
关键词 Akr1b8 cell proliferation facial nerve injury Gene-Act Networks inflammatory response RNA-SEQ Schwann cells transcriptomics analysis
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PCNA在子宫内膜癌组织中的表达及临床意义
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作者 郑春兰 王文文 +5 位作者 何政霞 张婵丽 唐智华 王艳 马骞 郭红军 《河南医学研究》 CAS 2024年第4期577-582,共6页
目的探讨增殖细胞核抗原(PCNA)基因在子宫内膜癌(UCEC)组织中的表达及与临床病理特征及潜在的生物学功能的关系。方法通过肿瘤基因组图谱(TCGA)数据库获取PCNA mRNA在UCEC中的表达数据及相关病理参数。收集2020年1月至2022年12月通过术... 目的探讨增殖细胞核抗原(PCNA)基因在子宫内膜癌(UCEC)组织中的表达及与临床病理特征及潜在的生物学功能的关系。方法通过肿瘤基因组图谱(TCGA)数据库获取PCNA mRNA在UCEC中的表达数据及相关病理参数。收集2020年1月至2022年12月通过术后病理确诊的UCEC组织标本20例和正常内膜组织标本20例。免疫组化技术检测PCNA蛋白在上述组织中的表达。采用单因素Cox回归、多因素Cox回归分析PCNA基因在UCEC患者中的预后价值。利用TIMER数据库分析PCNA基因与免疫细胞浸润的关系。利用基因集富集分析(GSEA)预测PCNA表达的相关通路。利用STRING在线分析以PCNA为中心相关蛋白之间的相互作用。结果PCNA基因mRNA和编码蛋白在UCEC组织中表达水平上调(P<0.001),且具有诊断价值。免疫组化染色显示,PCNA蛋白在UCEC细胞核中高表达。Cox回归分析结果显示年龄、临床分期、主要治疗结果、病理分级、残留组织、组织学分级、肿瘤侵袭度、放射治疗可作为UCEC潜在的预后因素。PCNA表达水平与免疫浸润细胞的丰度相关。GSEA预测结果显示PCNA高表达富集于细胞周期、同源重组、DNA修复等通路。结论PCNA基因可能是UCEC潜在的诊断和预后标志物。 展开更多
关键词 增殖细胞核抗原 子宫内膜癌 基因集富集分析 免疫细胞浸润
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猪卵巢circ_mmp16的鉴定及功能初探
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作者 张锫文 潘宇恒 +7 位作者 肖茜 顾洋 林许韬 邹冉 谢淑艳 沈林園 张辉 朱砺 《中国畜牧杂志》 CAS CSCD 北大核心 2024年第6期113-120,共8页
猪卵泡颗粒细胞的增殖能力与繁殖性状密切相关,本研究旨在鉴定猪卵巢组织的circ_mmp16及其调控网络,并对其潜在的调控功能进行分析。运用miRanda、RNA hybird等软件对circ_mmp16靶向调控的miRNA及靶基因进行生物信息学分析。结果显示,ci... 猪卵泡颗粒细胞的增殖能力与繁殖性状密切相关,本研究旨在鉴定猪卵巢组织的circ_mmp16及其调控网络,并对其潜在的调控功能进行分析。运用miRanda、RNA hybird等软件对circ_mmp16靶向调控的miRNA及靶基因进行生物信息学分析。结果显示,circ_mmp16是存在于哺乳动物中并且物种间保守的环状RNA,由基质金属蛋白酶16(Matrix Metallopeptidase 16,Mmp16)的2~4号外显子组成。此外,circ_mmp16可作为ssc-miR-217、ssc-miR-124a、ssc-miR-16等26个miRNA的竞争性内源RNA调控下游靶基因。通过对circ_mmp16-miRNA调控网络的靶基因进行GO和KEGG分析发现,Wnt信号通路、钙离子的转运、谷胱甘肽代谢以及花生四烯酸的代谢都与卵巢功能相关。组织表达谱分析发现circ_mmp16在骨骼肌中表达量最高,在卵巢中的表达量仅次于骨骼肌。在猪卵巢颗粒细胞水平上发现circ_mmp16具有促进细胞周期标志基因表达的作用,并能促进GPX3、GPX4谷胱甘肽合成标志基因的表达。综上,circ_mmp16作为调节多个miRNA的竞争性内源RNA,可能通过促进卵巢颗粒细胞的增殖以及抗氧化应激的能力起到保护卵巢颗粒细胞的作用,为进一步揭示颗粒细胞参与调控猪卵泡发育和闭锁提供基础数据。 展开更多
关键词 卵巢颗粒细胞 环状RNA 生物信息学分析 细胞增殖
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青梅蛹虫草发酵酒的品质分析及保健效果研究
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作者 郑太极 沈袁媛 +4 位作者 王保忠 朱海亮 赵卫民 张莹 王忠长 《中国酿造》 CAS 北大核心 2024年第7期177-183,共7页
该研究以青梅和蛹虫草为原料制备了一种新型青梅蛹虫草发酵酒,对其理化指标、酒精度、感官评分以及总酚、总黄酮、氨基酸、矿物质、挥发性风味物质等指标进行检测分析,并对其体外抗氧化、降血脂和降血糖的能力以及对人肝癌细胞(HepG2)... 该研究以青梅和蛹虫草为原料制备了一种新型青梅蛹虫草发酵酒,对其理化指标、酒精度、感官评分以及总酚、总黄酮、氨基酸、矿物质、挥发性风味物质等指标进行检测分析,并对其体外抗氧化、降血脂和降血糖的能力以及对人肝癌细胞(HepG2)和结肠癌细胞(HCT116)增殖的抑制效果进行评价。结果表明,青梅蛹虫草发酵酒酒精度为12.65%vol、感官评分为93.02分、理化及微生物指标符合《绿色食品果酒》标准;酒体富含6种矿物质元素(钾、钙、镁、锌、铜、铁),17种氨基酸,共检出37种挥发性风味成分;对ABTS+自由基和DPPH自由基清除率分别为(96.58±1.19)%和(94.15±0.24)%,具有较强的抗氧化效果;青梅蛹虫草发酵酒冻干粉溶液对牛磺胆酸钠的结合率为(65.50±1.24)%,对α-葡萄糖苷酶的抑制率为(83.52±0.23)%,说明其能够有效降低血脂和血糖,对HepG2和HCT116癌细胞的增殖抑制率分别为(83.16±0.54)%和(75.94±2.18)%,表现出良好的抑制效果。总之,青梅蛹虫草发酵酒是一款富含丰富营养成分且具有多重保健效果的功能饮品。 展开更多
关键词 青梅蛹虫草发酵酒 品质分析 抗氧化 降血糖 抑制癌细胞增殖
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RAD54L 在口腔鳞状细胞癌中的表达及功能研究
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作者 曹显 陈佳琳 +1 位作者 张锐 过新民 《口腔疾病防治》 2024年第11期853-862,共10页
目的探讨DNA修复重组RAD54样蛋白(RAD54-like protein,RAD54L)在口腔鳞状细胞癌(oral squa-mous cell carcinoma,OSCC)中的表达及功能作用。方法利用癌症基因组图谱(The Cancer Genome Atlas,TC-GA)数据库中OSCC相关数据,通过Mann-Whitn... 目的探讨DNA修复重组RAD54样蛋白(RAD54-like protein,RAD54L)在口腔鳞状细胞癌(oral squa-mous cell carcinoma,OSCC)中的表达及功能作用。方法利用癌症基因组图谱(The Cancer Genome Atlas,TC-GA)数据库中OSCC相关数据,通过Mann-Whitney U检验分析RAD54L在OSCC与对照样本中的表达差异,并采用受试者工作特征曲线评估RAD54L在OSCC诊断中的潜在价值。通过卡方检验分析RAD54L mRNA表达水平与OSCC患者临床病理数据之间的关系。将OSCC样本根据RAD54L mRNA表达中位值分为高低表达两组后,采用Cox回归分析比较两组的预后差异;采用DESeq2软件包筛选组间的差异表达基因,并利用cluster-Profiler包进行KEGG通路富集分析。采用Spearman相关性分析展示RAD54L与同源重组修复途径中基因表达的相关性。在明确RAD54L的生物信息学意义后,在人OSCC细胞株HSC-3中进行RAD54L基因敲低实验,并通过qRT-PCR验证敲低效率。转染后,通过CCK-8、5-乙炔基-2'-脱氧尿苷(5-ethynyl-2'-deoxyuridine,EdU)染色、细胞划痕、细胞凋亡及细胞周期实验,评估HSC-3细胞增殖、迁移、凋亡及周期的变化。结果生物信息学分析结果显示,RAD54L mRNA在OSCC中的表达高于正常对照组(P<0.001),且对预后不良的预测具有较高价值(AUC=0.927)。RAD54L高表达组男性患者比例增加(P=0.032),具有更高的T分期(P=0.040)、临床分期(P=0.027)及病理学分级(P=0.013)。以RAD54L mRNA表达中位值将OSCC样本分为高低表达两组后,RAD54L高表达组的预后较低表达组差(P=0.049);RAD54L高低表达两组间的差异表达基因主要富集于神经活性配体与受体的相互作用、细胞因子-细胞因子受体相互作用、钙信号通路、细胞周期、胃癌、细胞外基质受体相互作用、化学致癌-DNA加合物、DNA复制、同源重组和错配修复途径(P<0.05),在同源重组修复途径中RAD54L的表达与BRCA1、BLM、EME1、XRCC2、POLD1、TOPBP1、RAD51、BRIP1、RAD54B、BRCA2和SYCP3的表达呈正相关(P<0.05),其中与BRCA1、BLM和EME1的表达呈强正相关(R>0.8,P<0.05)。体外实验结果表明,RAD54L在HSC-3细胞中的表达被敲低至约25%(P<0.001),与对照组相比,RAD54L敲低组的增殖率降低(P<0.05),EdU阳性细胞比例下降(P<0.001),划痕闭合比例降低(P<0.001),G1期细胞比例增加(P<0.001),S期细胞比例降低(P<0.001),细胞凋亡比例增加(P<0.001)。结论RAD54L在OSCC中高表达且与不良预后相关。下调RAD54L表达可抑制HSC-3细胞的增殖和迁移,促进细胞凋亡,并阻碍细胞周期进程。 展开更多
关键词 同源重组修复基因 RAD54L 口腔鳞状细胞癌 预后 细胞增殖 细胞凋亡 细胞周期 生物信息学分析
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scRNA-seq reveals that origin recognition complex subunit 6 regulates mouse spermatogonial cell proliferation and apoptosis via activation of Wnt/β-catenin signaling
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作者 Shi-Wei Liu Jia-Qiang Luo +11 位作者 Liang-Yu Zhao Ning-Jing Ou Chao-Yang Yu-Xiang Zhang Hao-Wei Bai Hong-Fang Sun Jian-Xiong Zhang Chen-Cheng Yao Peng Li Ru-Hui Tian Zheng Li Zi-Jue Zhu 《Asian Journal of Andrology》 SCIE CAS CSCD 2024年第1期46-56,共11页
The regulation of spermatogonial proliferation and apoptosis is of great significance for maintaining spermatogenesis.The single-cell RNA sequencing(scRNA-seq)analysis of the testis was performed to identify genes upr... The regulation of spermatogonial proliferation and apoptosis is of great significance for maintaining spermatogenesis.The single-cell RNA sequencing(scRNA-seq)analysis of the testis was performed to identify genes upregulated in spermatogonia.Using scRNAseq analysis,we identified the spermatogonia upregulated gene origin recognition complex subunit 6(Orc6),which is involved in DNA replication and cell cycle regulation;its protein expression in the human and mouse testis was detected by western blot and immunofluorescence.To explore the potential function of Orc6 in spermatogonia,the C18-4 cell line was transfected with control or Orc6 siRNA.Subsequently,5-ethynyl-2-deoxyuridine(EdU)and terminal deoxynucleotidyl transferase dUTP nick end labeling(TUNEL)assays,flow cytometry,and western blot were used to evaluate its effects on proliferation and apoptosis.It was revealed that ORC6 could promote proliferation and inhibit apoptosis of C18-4 cells.Bulk RNA sequencing and bioinformatics analysis indicated that Orc6 was involved in the activation of wingless/integrated(Wnt)/β-catenin signaling.Western blot revealed that the expression ofβ-catenin protein and its phosphorylation(Ser675)were significantly decreased when silencing the expression of ORC6.Our findings indicated that Orc6 was upregulated in spermatogonia,whereby it regulated proliferation and apoptosis by activating Wnt/β-catenin signaling. 展开更多
关键词 cell proliferation ORCG scRNA-seq analysis SPERMATOGONIA Wnt/β-catenin signaling
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Mechanism of pachymic acid in the treatment of gastric cancer based on network pharmacology and experimental verification
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作者 Yu-Hua Du Jian-Jun Zhao +6 位作者 Xia Li Shi-Cong Huang Na Ning Guo-Qing Chen Yi Yang Yi Nan Ling Yuan 《World Journal of Gastrointestinal Oncology》 SCIE 2024年第1期30-50,共21页
BACKGROUND Pachymic acid(PA)is derived from Poria cocos.PA has a variety of pharmacological and inhibitory effects on various tumors.However,the mechanism of action of PA in gastric cancer(GC)remains unclear.AIM To in... BACKGROUND Pachymic acid(PA)is derived from Poria cocos.PA has a variety of pharmacological and inhibitory effects on various tumors.However,the mechanism of action of PA in gastric cancer(GC)remains unclear.AIM To investigate the mechanism of PA in treating GC via the combination of network pharmacology and experimental verification.METHODS The GeneCards and OMIM databases were used to derive the GC targets,while the Pharm Mapper database provided the PA targets.Utilizing the STRING database,a protein-protein interaction network was constructed and core targets were screened.The analyses of Gene Ontology,Kyoto Encyclopedia of Genes and Genomes(KEGG),and gene set enrichment analysis were conducted,and molecular docking and clinical correlation analyses were performed on the core targets.Ultimately,the network pharmacology findings were validated through in vitro cell assays,encompassing assessments of cell viability,apoptosis,cell cycle,cloning,and western blot analysis.RESULTS According to network pharmacology analysis,the core targets were screened,and the PI3K/AKT signaling pathway is likely to be the mechanism by which PA effectively treats GC,according to KEGG enrichment analysis.The experimental findings showed that PA could control PI3K/AKT signaling to prevent GC cell proliferation,induce apoptosis,and pause the cell cycle.CONCLUSION Network pharmacology demonstrated that PA could treat GC by controlling a variety of signaling pathways and acting on a variety of targets.This has also been supported by in vitro cell studies,which serve as benchmarks for further research. 展开更多
关键词 Pachymic acid Gastric cancer Network pharmacology Enrichment analysis cell proliferation
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子宫内膜癌患者组织中PD-L1、Ki-67表达及意义
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作者 吴龙云 李冰洁 曾长 《河北医药》 CAS 2024年第11期1674-1677,共4页
目的研究子宫内膜癌(EC)患者组织中程序性细胞死亡配体-1(PD-L1)、增殖细胞核抗原-67(Ki-67)的表达情况及临床意义。方法收集2022年1月至2023年8月医院行手术治疗的110例EC患者癌组织,根据TNM分期为A组(Ⅰ期,n=25)、B组(Ⅱ期,n=41)、C组... 目的研究子宫内膜癌(EC)患者组织中程序性细胞死亡配体-1(PD-L1)、增殖细胞核抗原-67(Ki-67)的表达情况及临床意义。方法收集2022年1月至2023年8月医院行手术治疗的110例EC患者癌组织,根据TNM分期为A组(Ⅰ期,n=25)、B组(Ⅱ期,n=41)、C组(Ⅲ期,n=31)、D组(Ⅳ期,n=13)。采用免疫组织化学法检测4组癌组织中PD-L1、Ki-67表达情况及临床意义。结果4组的基线资料比较,差异无统计学意义(P>0.05);D组的CA125、CA199水平,PD-L1、Ki-67阳性表达率均高于A、B、C组,且组间两两比较,差异均有统计学意义(P<0.05);经Kendall’s tau-b相关性分析结果显示,EC患者组织中PD-L1、Ki-67表达、CA125、CA199水平与临床分期之间呈正相关(R值分别为0.314、0.354、0.306、0.392,P<0.05);经有序Logistic回归分析结果显示,以Ⅰ期为参照,PD-L1、Ki-67阳性率降低时,EC患者临床分期高的可能性分别为0.145倍、0.320倍(P<0.05),血清CA125、CA199水平与EC患者临床分期有关(OR>0.05,P<0.05)。结论EC患者组织中PD-L1、Ki-67的阳性表达率存在异常变化,且与患者临床分期存在一定的关系。 展开更多
关键词 子宫内膜癌 临床分期 程序性死亡配体-1 增殖细胞核抗原-67
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甲基转移酶样3调节食管鳞癌细胞功能的研究
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作者 熊佳时 季鹏翔 +1 位作者 王俊婕 何刚 《南通大学学报(医学版)》 2024年第2期101-106,共6页
目的:探究甲基转移酶样3(methyltransferase-like 3,METTL3)在食管鳞癌中的表达水平和作用机制。方法:体外构建食管鳞癌细胞Eca-109的METTL3敲低模型,利用实时荧光定量PCR(quantitative real-time PCR,qRTPCR)、Western Blot验证敲低水... 目的:探究甲基转移酶样3(methyltransferase-like 3,METTL3)在食管鳞癌中的表达水平和作用机制。方法:体外构建食管鳞癌细胞Eca-109的METTL3敲低模型,利用实时荧光定量PCR(quantitative real-time PCR,qRTPCR)、Western Blot验证敲低水平,检测肿瘤细胞的增殖、迁移能力。利用差异分析、富集分析以及生存分析等寻找METTL3的靶基因。结果:敲低METTL3可以显著抑制食管癌细胞的增殖和迁移能力;利用生物信息学分析寻找到受METTL3调控的9个可能的靶基因(精脒/精胺N1-乙酰基转移酶1(spermidine/spermine N1-acetyltransferase 1,SAT1)、低密度脂蛋白受体(low density lipoprotein receptor,LDLR)、整合素β1(integrin subunit beta 1,ITGB1)、细胞间黏附分子5(intercellular adhesion molecule 5,ICAM5)、富含谷氨酸的WD重复序列蛋白1(glutamate-rich WD40 repeat containing 1,GRWD1)、含纤维连接蛋白Ⅲ型结构域3A蛋白(fibronectintype-Ⅲdomain-containing protein 3A,FNDC3A)、DnaJ热休克蛋白家族成员C2[DnaJ heat shock protein family(Hsp40)member C2,DNAJC2]、卷曲螺旋域蛋白88C(coiled-coil domain containing 88C,CCDC88C)、Rho GTP酶激活蛋白12(Rho GTPase activating protein 12,ARHGAP12),其中SAT1高表达与食管鳞癌患者预后不良密切相关,差异有统计学意义。结论:METTL3在食管鳞癌中发挥促癌作用,可能通过调控SAT1等靶基因的m6A甲基化影响食管鳞癌患者的预后。 展开更多
关键词 食管鳞癌 甲基转移酶样3 细胞增殖 生存分析
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ETM study of electroporation influence on cell morphology in human malignant melanoma and human primary gingival fibroblast cells 被引量:2
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作者 Nina Skolucka Malgorzata Daczewska +5 位作者 Jolanta Saczko Agnieszka Chwilkowska Anna Choromanska Malgorzata Kotulska Iwona Kaminska Julita Kulbacka 《Asian Pacific Journal of Tropical Biomedicine》 SCIE CAS 2011年第2期94-98,共5页
Objective:To estimate electroporation(EP) influence on malignant and normal cells.Methods: Two cell lines including human malignant melanoma(Me-43) and normal human gingival fibroblast(HCFs) were used.EP parameters we... Objective:To estimate electroporation(EP) influence on malignant and normal cells.Methods: Two cell lines including human malignant melanoma(Me-43) and normal human gingival fibroblast(HCFs) were used.EP parameters were the following:230,1000,1 730,2 300 V/cm;30 μ s by 3 impulses for every case.The viability of cells after EP was estimated by MTT assay. The ullrastructural analysis was observed by transmission electron microscope(Zeiss EM 900). Results:In the current study we observed the intracellular effect following EP on Me-43 and HGF cells.At the conditions applied,we did not observe any significant damage of mitochondrial activity in both cell lines treated by EP.Conversely,we showed that EP in some conditions can stimulate cells to proliferation.Some changes induced by EP were only visible in electron microscopy.In fibroblast cells we observed significant changes in lower parameters of EP(230 and 1 000 V/cm).After applying higher electric field intensities(2 300 V/cm) we detected many vacuoles,myelin-like bodies and swallowed endoplasmic reticulum.In melanoma cells such strong pathological modifications after EP were not observed,in comparison with control cells. The ultrastructure of both treated cell lines was changed according to the applied parameters of EP.Conclusions:We can claim that EP conditions are cell line dependent.In terms of the intracellular morphology,human fibroblasts are more sensitive to electric field as compared with melanoma cells.Optimal conditions should be determined for each cell line.Summarizing our study,we can conclude that EP is not an invasive method for human normal and malignant cells. This technique can be safely applied in chemotherapy for delivering drugs into tumor cells. 展开更多
关键词 ELECTROPORATION ELECTRON microscopy HUMAN melanoma cells PRIMARY fibroblasts cell morphology Transmission ELECTRON microscope Malignant cell Normal cell Intracellular effect Electric field proliferation Ultrastructural analysis
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ASPM调控鼻咽癌细胞周期及抑制细胞增殖的作用及机制探讨 被引量:1
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作者 杨开炎 覃启才 +5 位作者 李旭祥 冯大益 农丰靖 杨秋云 唐凤珠 瞿申红 《现代肿瘤医学》 CAS 北大核心 2023年第8期1440-1447,共8页
目的:通过生物信息学分析的方法,探讨异常纺锤体样小头畸形相关蛋白(abnormal spindle-like microcephaly-associated protein,ASPM)在鼻咽癌中的分子功能及作用机制;通过细胞实验,初步验证ASPM在鼻咽癌细胞中的作用。方法:使用R语言的l... 目的:通过生物信息学分析的方法,探讨异常纺锤体样小头畸形相关蛋白(abnormal spindle-like microcephaly-associated protein,ASPM)在鼻咽癌中的分子功能及作用机制;通过细胞实验,初步验证ASPM在鼻咽癌细胞中的作用。方法:使用R语言的limma包对鼻咽癌的芯片数据集进行基因差异表达分析;使用R语言的clusterProfiler包进行ASPM相关基因的富集分析;通过流式细胞术、CCK8实验、实时定量PCR及蛋白免疫印迹等方法,研究沉默ASPM表达对鼻咽癌细胞周期及细胞增殖的影响。结果:差异表达分析发现ASPM mRNA水平在鼻咽癌数据集中高表达(P<0.001);基因富集分析发现与ASPM相关的基因在鼻咽癌中与细胞周期、DNA复制等信号通路关联;细胞功能实验发现沉默ASPM的表达,鼻咽癌细胞周期停滞于G 1期,鼻咽癌细胞增殖减少;沉默ASPM的表达可以影响鼻咽癌细胞周期及增殖标志物的表达。结论:ASPM可能通过调控鼻咽癌细胞周期及DNA复制等信号通路,导致肿瘤发生与进展;沉默鼻咽癌细胞中ASPM mRNA的表达,可以使细胞周期停滞于G 1期,细胞增殖减少;ASPM可能作为改善鼻咽癌预后的潜在靶点。 展开更多
关键词 鼻咽癌 ASPM 富集分析 细胞周期 细胞增殖
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水牛DDR1基因生物信息学及细胞学功能分析
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作者 陆杏蓉 段安琴 +6 位作者 邓廷贤 马小娅 杨春艳 郑海英 冯超 黄晨茜 尚江华 《黑龙江畜牧兽医》 CAS 北大核心 2023年第9期48-53,130,131,共8页
为了了解水牛DDR1蛋白的生物信息学和细胞学功能,试验采用ProtParam、ProtScale、SOPMA、SWISS-MODEL、PSORTⅡPredictio、NetPhos 3.1在线软件对水牛DDR1蛋白进行生物信息学分析,采用基因干扰的方法研究水牛DDR1基因对水牛乳腺上皮细... 为了了解水牛DDR1蛋白的生物信息学和细胞学功能,试验采用ProtParam、ProtScale、SOPMA、SWISS-MODEL、PSORTⅡPredictio、NetPhos 3.1在线软件对水牛DDR1蛋白进行生物信息学分析,采用基因干扰的方法研究水牛DDR1基因对水牛乳腺上皮细胞增殖、凋亡、基因表达和迁移的影响。结果表明:水牛DDR1蛋白由915个氨基酸组成,分子式为C_(4538)H_(7029)N_(1261)O_(1287)S_(43),分子量为101222.99 u,半衰期为30 h,理论等电点为6.22,属于酸性、不稳定、可溶性蛋白质。DDR1蛋白的二级结构由256个α-螺旋(27.98%)、175个延伸链(19.13%)、55个β-折叠(6.01%)、429个无规则卷曲(46.89%)构成。亚细胞定位于内质网(44.4%)、高尔基体(33.3%)和质膜中(22.2%)中。DDR1蛋白共含有65个磷酸化位点,其中丝氨酸磷酸化位点35个,苏氨酸磷酸化位点18个,酪氨酸磷酸化位点12个。DDR1基因的最佳干扰片段为siDDR1-1,最佳干扰时间为48 h。DDR1基因干扰72小时时可极显著抑制水牛乳腺上皮细胞的增殖(P<0.01)。DDR1基因干扰显著或极显著上调凋亡相关基因BCL-2(P<0.01)、XIAP(P<0.05)、TP53(P<0.01)和增殖相关基因CCND1(P<0.01)的表达,下调凋亡相关基因CASPASE3(P<0.05)和CCDB1(P>0.05)的表达,但对细胞凋亡率的影响不显著(P>0.05)。此外,DDR1基因干扰可极显著降低水牛乳腺上皮细胞的迁移率(P<0.01)。说明DDR1基因干扰可极显著影响水牛乳腺上皮细胞的增殖和迁移。 展开更多
关键词 DDR1基因 生物信息学 分析 乳腺上皮细胞 增殖 凋亡 迁移
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细胞周期蛋白A2在肝细胞癌中的表达及其意义
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作者 马苗苗 黄海珍 +7 位作者 王雪轩 张义炜 张书铭 杨英 陈宁园 黄玲 彭均华 潘尚领 《广西医科大学学报》 CAS 2023年第5期814-821,共8页
目的:探讨细胞周期蛋白A2(CCNA2)在肝细胞癌(HCC)中的表达及其意义。方法:从TCGA、GEO、GETx数据库获得测序数据,通过STATA 15.0进行meta分析评估HCC患者肿瘤组织中CCNA2 mRNA的表达水平;通过数据库GEPIA绘制CCNA2在HCC中的生存曲线,探... 目的:探讨细胞周期蛋白A2(CCNA2)在肝细胞癌(HCC)中的表达及其意义。方法:从TCGA、GEO、GETx数据库获得测序数据,通过STATA 15.0进行meta分析评估HCC患者肿瘤组织中CCNA2 mRNA的表达水平;通过数据库GEPIA绘制CCNA2在HCC中的生存曲线,探究CCNA2对HCC预后的影响。在HCC细胞系(Huh7和SK-Hep1)沉默CCNA2(shCCNA2组),并设置空载体对照组(shNC组),通过细胞功能学实验检测沉默CCNA2对HCC细胞增殖、迁移与侵袭、细胞周期和细胞凋亡中的影响。通过在鸡胚绒毛尿囊膜构建HCC细胞移植瘤模型,观察并分离瘤体,检测CCNA2在体内对HCC生长的影响。结果:CCNA2在HCC患者肿瘤组织中m RNA水平显著高于非癌肝组织(SMD=1.65,95%CI:1.46~1.85,I2=89%)。CCNA2高表达与肝癌患者的不良预后呈负相关关系。与shNC组相比,shCCNA2组细胞增殖、迁移和侵袭能力降低(P<0.05)。shCCNA2组Huh7和SK-Hep1细胞的G0/G1期、S期、G2/M期占比发生改变(P<0.05)。鸡胚绒毛尿囊膜移植成瘤实验中,与shNC组比较,shCCNA2组肿瘤体积明显减小(P<0.05)。结论:CCNA2可能通过影响HCC细胞的增殖、迁移和侵袭能力,抑制HCC的进展和转移,其有望成为HCC治疗靶点。 展开更多
关键词 肝细胞癌 细胞周期蛋白A2 细胞增殖 生物信息学分析
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长链非编码RNA RAB11B-AS1在胶质瘤中的表达及预后价值研究 被引量:1
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作者 王剑 魏媛媛 +1 位作者 朱利双 周立敏 《陕西医学杂志》 CAS 2023年第4期399-403,共5页
目的:检测长链非编码RNA(lncRNA)RAB11B-AS1(RAB11B-AS1)在脑胶质瘤中的表达特征,分析其在不同临床病理特征中的表达差别,探讨其预后价值。方法:应用生信分析数据库(GEPIA)对RAB11B-AS1的表达特征(163例胶质瘤、207例正常脑组织)进行预... 目的:检测长链非编码RNA(lncRNA)RAB11B-AS1(RAB11B-AS1)在脑胶质瘤中的表达特征,分析其在不同临床病理特征中的表达差别,探讨其预后价值。方法:应用生信分析数据库(GEPIA)对RAB11B-AS1的表达特征(163例胶质瘤、207例正常脑组织)进行预测。选择68例确诊为脑胶质瘤并行手术治疗的患者作为研究对象,留取术后肿瘤组织,选择68例因脑出血行手术治疗后留取的边缘正常脑组织作为对照。选择人脑胶质瘤细胞株U87和T98G,选择人脑正常胶质细胞株HEB。应用实时荧光定量PCR法(qRT-PCR)检测RAB11B-AS1的表达,应用免疫组化EnVision检测增殖细胞核抗原(PCNA)的表达。结果:GEPIA预测到RAB11B-AS1在胶质瘤中的表达可能升高。脑胶质瘤术后组织中RAB11B-AS1的表达明显高于正常脑组织(P=0.0001)。胶质瘤中RAB11B-AS1表达在不同肿瘤最大径、WHO分级、有无坏死方面比较差异有统计学意义(均P<0.05)。胶质瘤中RAB11B-AS1与PCNA具有正相关性(r=0.62,P=0.0341)。生存分析显示RAB11B-AS1的表达与术后生存时间有关(P=0.041)。胶质瘤细胞株U87和T98G中RAB11B-AS1的表达均明显高于HEB(均P<0.05)。结论:脑胶质瘤组织中RAB11B-AS1的表达升高,与PCNA的表达具有正相关性,术后检测RAB11B-AS1的表达对判断预后可能有一定价值。 展开更多
关键词 肿瘤 胶质瘤 长链非编码RNA RAB11B-AS1 增殖细胞核抗原 生存分析
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Transient induction of actin cytoskeletal remodeling associated with dedifferentiation,proliferation,and redifferentiation stimulates cardiac regeneration 被引量:1
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作者 Wenbin Fu Qiao Liao +4 位作者 Yu Shi Wujian Liu Hongmei Ren Chunmei Xu Chunyu Zeng 《Acta Pharmaceutica Sinica B》 SCIE CAS CSCD 2024年第6期2537-2553,共17页
The formation of new and functional cardiomyocytes requires a 3-step process:dedifferentiation,proliferation,and redifferentiation,but the critical genes required for efficient dedifferentiation,proliferation,and redi... The formation of new and functional cardiomyocytes requires a 3-step process:dedifferentiation,proliferation,and redifferentiation,but the critical genes required for efficient dedifferentiation,proliferation,and redifferentiation remain unknown.In our study,a circular trajectory using single-nucleus RNA sequencing of the pericentriolar material 1 positive(PCM1^(+))cardiomyocyte nuclei from hearts 1 and 3 days after surgery-induced myocardial infarction(MI)on postnatal Day 1 was reconstructed and demonstrated that actin remodeling contributed to the dedifferentiation,proliferation,and redifferentiation of cardiomyocytes after injury.We identified four top actin-remodeling regulators,namely Tmsb4x,Tmsb10,Dmd,and Ctnna3,which we collectively referred to as 2D2P.Transiently expressed changes of 2D2P,using a polycistronic non-integrating lentivirus driven by Tnnt2(cardiac-specific troponin T)promoters(Tnnt2-2D2P-NIL),efficiently induced transiently proliferative activation and actin remodeling in postnatal Day 7 cardiomyocytes and adult hearts.Furthermore,the intramyocardial delivery of Tnnt2-2D2P-NIL resulted in a sustained improvement in cardiac function without ventricular dilatation,thickened septum,or fatal arrhythmia for at least 4 months.In conclusion,this study highlights the importance of actin remodeling in cardiac regeneration and provides a foundation for new gene-cocktail-therapy approaches to improve cardiac repair and treat heart failure using a novel transient and cardiomyocyte-specific viral construct. 展开更多
关键词 Single cell analysis Actin remodeling Tmsb4x Tmsb10 Dmd Ctnna3 Myocardial infarction Cardiomyocytes proliferation Cardiac regeneration Genetic therapy
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FDFT1基因的泛癌表达分析、与癌症预后的关联性分析及其对几种肿瘤细胞增殖的影响
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作者 刘巧珍 韦连登 +5 位作者 刘琳 田旭云 邹萸婷 杨维玲 姜艳 曾怡 《右江民族医学院学报》 2023年第4期563-569,共7页
目的探究FDFT1(farnesyl-diphosphate farnesyltransferase 1)基因在不同肿瘤中的表达差异及其对肿瘤预后与肿瘤微环境的影响,及FDFT1过表达对几种肿瘤细胞增殖的影响。方法利用TCGA联合GTEx数据库分析FDFT1 mRNA在不同肿瘤组织与正常... 目的探究FDFT1(farnesyl-diphosphate farnesyltransferase 1)基因在不同肿瘤中的表达差异及其对肿瘤预后与肿瘤微环境的影响,及FDFT1过表达对几种肿瘤细胞增殖的影响。方法利用TCGA联合GTEx数据库分析FDFT1 mRNA在不同肿瘤组织与正常组织之间的表达差异;绘制K-M生存曲线,评估FDFT1基因表达与癌症预后的关系;利用细胞增殖实验探索FDFT1过表达对几种肿瘤细胞增殖的影响。结果与正常组织相比,在肾上腺皮质癌(adrenocortical carcinoma,ACC)等16种肿瘤组织中FDFT1 mRNA表达显著上调;在肾透明细胞癌(kidney renal cell carcinoma,KIRC)等8种肿瘤组织中FDFT1 mRNA表达下调。癌症预后相关性分析显示,FDFT1的高表达在ACC、胰腺癌(pancreatic adenocarcinoma,PAAD)、口腔鳞状细胞癌(oral squamous cell carcinoma,OSCC)及肝细胞癌(liver hepatocellular carcinoma,LIHC)中有较差的预后意义;而在KIRC中FDFT1的高表达与较好的预后有关。免疫浸润分析结果显示,与FDFT1基因低表达组相比,高表达组的ACC、OSCC、KIRC组织中活化的树突状细胞(activated dendritic cell,aDC)浸润评分较低;而在PAAD癌组织中,aDC浸润评分差异无统计学意义。细胞增殖实验结果显示FDFT1过表达促进人胰腺癌细胞(PANC-1)等细胞的增殖。结论FDFT1基因在ACC等16种肿瘤组织中mRNA表达上调,在KIRC等8种肿瘤组织中表达下调。FDFT1高表达在PAAD、OSCC和LIHC中与较差的预后有关,在KIRC中与较好的预后有关。FDFT1过表达慢病毒促进PANC-1等细胞的增殖。 展开更多
关键词 FDFT1 泛癌 表达分析 细胞增殖
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