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Distribution,abundance,and realized niches of meroplankton by two different mesh size nets during spring 2017 in the Southern Yellow Sea,China
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作者 Shuangyan ZHANG Fang ZHANG +3 位作者 Xiaoxia SUN Dongjie GUO Jianfeng WANG Song SUN 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第5期1540-1556,共17页
Meroplankton play a crucial role in both benthic and pelagic ecosystems.Existing quantitative research on estimating the quantities of meroplankton groups is both underrepresented and inaccurate.To investigate and eva... Meroplankton play a crucial role in both benthic and pelagic ecosystems.Existing quantitative research on estimating the quantities of meroplankton groups is both underrepresented and inaccurate.To investigate and evaluate the influence of varying mesh sizes(505 and 160μm)on the sampling efficiency of meroplankton,we conducted an examination using two commonly used plankton nets during the spring season in the Southern Yellow Sea(SYS).Our study revealed a total of 12 meroplankton groups,with 9 groups identified in the 505-μm mesh nets and 11 groups in the 160-μm mesh nets.The results demonstrated the superior collection efficiency of the 160-μm net compared to the 505-μm net across the majority of meroplankton groups.Furthermore,we focused on exploring the abundance,distribution patterns,and realized niches of meroplankton collected by the two mesh size nets,and observed that the distribution of meroplankton closely resembled the distribution of possible benthic adults in the SYS.Correlation analysis of the six dominant groups collected in the 160-μm mesh nets revealed that seawater temperature and salinity emerged as the key environmental factors driving variations in meroplankton abundance within the SYS.This study also found that a smaller mesh size net does not necessarily capture meroplankton more comprehensively.A comprehensive understanding of the ecological characteristics of meroplankton requires the combination of two types of nets for research.Our research significantly advances our understanding of the quantification,abundance,and distribution of meroplankton,serving as a valuable contribution to the broader landscape of detailed quantitative meroplankton studies. 展开更多
关键词 meroplankton plankton net mesh size collection efficiency distribution characteristic realized niches
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Cellular and molecular characteristics of the premetastatic niches 被引量:1
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作者 Hongfei Liu Guoxin Zhang Ran Gao 《Animal Models and Experimental Medicine》 CAS CSCD 2023年第5期399-408,共10页
The premetastatic niches(PMN)formed by primary tumor-derived molecules regulate distant organs and tissues to further favor tumor colonization.Targeted PMN therapy may prevent tumor metastasis in the early stages,whic... The premetastatic niches(PMN)formed by primary tumor-derived molecules regulate distant organs and tissues to further favor tumor colonization.Targeted PMN therapy may prevent tumor metastasis in the early stages,which is becoming increasingly important.At present,there is a lack of in-depth understanding of the cellular and molecular characteristics of the PMN.Here,we summarize current research advances on the cellular and molecular characteristics of the PMN.We emphasize that PMN intervention is a potential therapeutic strategy for early prevention of tumor metastasis,which provides a promising basis for future research and clinical application. 展开更多
关键词 extracellular vesicles IMMUNOSUPPRESSION premetastatic niches tumor metastasis
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Deer antler stem cell niche: An interesting perspective 被引量:1
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作者 Claudia Cavallini Elena Olivi +5 位作者 Riccardo Tassinari Chiara Zannini Gregorio Ragazzini Martina Marcuzzi Valentina Taglioli Carlo Ventura 《World Journal of Stem Cells》 SCIE 2024年第5期479-485,共7页
In recent years,there has been considerable exploration into methods aimed at enhancing the regenerative capacity of transplanted and/or tissue-resident cells.Biomaterials,in particular,have garnered significant inter... In recent years,there has been considerable exploration into methods aimed at enhancing the regenerative capacity of transplanted and/or tissue-resident cells.Biomaterials,in particular,have garnered significant interest for their potential to serve as natural scaffolds for cells.In this editorial,we provide commentary on the study by Wang et al,in a recently published issue of World J Stem Cells,which investigates the use of a decellularized xenogeneic extracellular matrix(ECM)derived from antler stem cells for repairing osteochondral defects in rat knee joints.Our focus lies specifically on the crucial role of biological scaffolds as a strategy for augmenting stem cell potential and regenerative capabilities,thanks to the establishment of a favorable microenvironment(niche).Stem cell differen-tiation heavily depends on exposure to intrinsic properties of the ECM,including its chemical and protein composition,as well as the mechanical forces it can generate.Collectively,these physicochemical cues contribute to a bio-instructive signaling environment that offers tissue-specific guidance for achieving effective repair and regeneration.The interest in mechanobiology,often conceptualized as a form of“structural memory”,is steadily gaining more validation and momen-tum,especially in light of findings such as these. 展开更多
关键词 Extracellular matrix Antler stem cells Stem cell niche Regenerative medicine Decellularized scaffolds Cell memory
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Distribution and dynamics of niche and interspecific association of dominant phytoplankton species in the Feiyun River basin,Zhejiang,China
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作者 Shengnan ZHU Zengchuan DONG +6 位作者 Guobin FU Shujun WU Jinyu MENG Weilin LIU Yupeng LIU Xun CUI Yuejiao ZHOU 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第4期1157-1172,共16页
To investigate the dominant species and interspecific association in the phytoplankton community of the Feiyun River basin in Zhejiang Province,East China,the main stream and the Shanxi Zhaoshandu Reservoir in the dow... To investigate the dominant species and interspecific association in the phytoplankton community of the Feiyun River basin in Zhejiang Province,East China,the main stream and the Shanxi Zhaoshandu Reservoir in the downstream were chosen as the study area,for which 22 sampling sites were designated.Sampling was conducted in September 2021,January,May,and July 2022.Phytoplankton species were identified from both quantitative samples and in-vivo observations.Phytoplankton was quantified by direct counting.Results show that there were 98 species belonging to 6 phyla and 78 genera.In addition,to clarify the niches of the dominant phytoplankton species and their interspecific association,the dominance index was calculated,and a comprehensive analysis was conducted including niche width,niche overlap value,ecological response rate,overall association,chi-square test,and the stability.The phytoplankton community exhibited characteristics of a Cyanobacteria-Chlorophyta-Diatom type community,showing higher diversity in spring and lower diversity in summer.Among 11 dominants phytoplankton species from 3 phyla,both frequency and dominance degree varied seasonally,of which Microcystis sp.was the dominant species in Spring,Autumn,and Winter.The niche widths of the dominant species ranged from 0.234 to 0.933,and were categorized into three groups.The niche overlap values of the 11 dominant species ranged from 0.359 to 0.959,exhibiting significant seasonal differences-highest in winter followed by autumn,spring,and summer in turn.The overall correlation among dominant species in all four seasons revealed a non-significant negative association,resulting in an unstable community structure.A significant portion(84.2%)of species pairs displayed positive associations,suggesting a successional pattern where Diatoms dominated while other dominant species shared resources and space.Despite this pattern,stability measurements indicated that the dominant species community remained unstable.Therefore,careful monitoring is recommended for potential water environment issues arising from abnormal proliferation of dominant species in the watershed during winter.This research built a theoretical foundation with a data support to the early warning of eutrophication and provided a reference for water resources management in similar watersheds along the eastern coast of China. 展开更多
关键词 PHYTOPLANKTON dominant species nichE interspecific association Feiyun River basin
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Advancing Pediatric Hemodialysis Care through the Novel Intervention in Children’s Healthcare (NICH) Program
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作者 Jessica Williams Natalia Garban +1 位作者 Cynthia Wong Elizabeth Talley 《Open Journal of Nephrology》 2024年第3期295-301,共7页
Racial, ethnic, and socioeconomic disparities present daunting hurdles that prevent equitable health outcomes for patients with end-stage kidney disease (ESKD) on hemodialysis. Additional resources, such as the Novel ... Racial, ethnic, and socioeconomic disparities present daunting hurdles that prevent equitable health outcomes for patients with end-stage kidney disease (ESKD) on hemodialysis. Additional resources, such as the Novel Intervention in Children’s Health (NICH) at Lucille Packard Children’s Hospital Stanford, provide individualized support to best assist families by assessing barriers to care with the goal of improving health outcomes. In this retrospective cohort study, we reviewed patients with ESKD on hemodialysis involved in NICH to explore if NICH serves as a liaison between the patients and multidisciplinary medical team and to explore if NICH helps patients better manage the challenges of end-stage kidney disease. Through the electronic medical record system, EPIC, we reviewed the patients’ surveys to identify barriers to care, which included school and life engagement difficulty, lack of mental health resources, food and transportation insecurity, and cultural/language barriers. We also tracked the number of hospitalizations and ED visits before and during the patients’ enrollment in NICH. We discovered that through NICH, the aforementioned barriers to care were eliminated, the number of hospitalizations and emergency department visits was reduced, and all patients transitioned from inactive to active on the transplant list. NICH successfully improved the health outcomes of these patients and empowered patients to be more engaged in their care. 展开更多
关键词 Pediatric Hemodialysis ESKD nich Healthcare Disparities
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Post-disaster spatial reconstruction from the perspective of a rural settlement niche in the upper reaches of the Minjiang River
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作者 LIU Yanguo WANG Li +5 位作者 ZOU Qiang LI Jingji LU Yafeng LI Lin XU Binni WANG Lihui 《Journal of Mountain Science》 SCIE CSCD 2024年第5期1630-1646,共17页
Post-disaster recovery and reconstruction provide an effective way to reduce the disaster vulnerability of, and promote leapfrog development in, an affected area. To date, studies that have used administrative boundar... Post-disaster recovery and reconstruction provide an effective way to reduce the disaster vulnerability of, and promote leapfrog development in, an affected area. To date, studies that have used administrative boundaries to investigate the reconstruction of settlement space have not been able to clearly define the real boundaries of land use changes or quantify the degree of response to the ‘Build-Back-Better’ initiative, and have lacked any consideration of the fourth reconstruction stage–development period(10 years). This study constructed a mountain settlement niche and analyzed the characteristics, spatial reconstruction, and drivers of rural settlements during 2009–2019 in the upper reaches of the Minjiang River, southwest China. The results showed the following:(1) Natural factors were the basis for the formation and development of mountain settlement niches. The scale of the settlement niche and its land use structure depended on the physical geography features and the ethnic farming and grazing traditions. The settlement niche provided a realistic boundary for the spatial reconstruction.(2) The layout of residential land around cropland was the common feature of the mountain settlement niche. Of all the land use types, the roads and rural residential lands showed the most change over the 10 years;13,860 residential patches increased in size and 4,742 patches were abandoned.(3) The area of orchards, planted to reconstruct the economy in the mountains, increased by nearly 2.5 times.(4) Collapses, landslides, and debris flow disasters and the ecological red line influenced the spatial reconstruction. While the main focus of post-disaster recovery is spatial reconstruction, initiatives should include economic and spiritual recovery, and should also achieve sustainable development of the region. 展开更多
关键词 Rural settlements Spatial reconstruction Settlement niche Post-Wenchuan Earthquake Reconstruction Southwest China
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A Single-Cell Landscape of Human Liver Transplantation Reveals a Pathogenic Immune Niche Associated with Early Allograft Dysfunction
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作者 Xin Shao Zheng Wang +8 位作者 Kai Wang Xiaoyan Lu Ping Zhang Rongfang Guo Jie Liao Penghui Yang Shusen Zheng Xiao Xu Xiaohui Fan 《Engineering》 SCIE EI CAS CSCD 2024年第5期193-208,共16页
Liver transplantation(LT)is the standard therapy for individuals afflicted with end-stage liver disease.Despite notable advancements in LT technology,the incidence of early allograft dysfunction(EAD)remains a critical... Liver transplantation(LT)is the standard therapy for individuals afflicted with end-stage liver disease.Despite notable advancements in LT technology,the incidence of early allograft dysfunction(EAD)remains a critical concern,exacerbating the current organ shortage and detrimentally affecting the prognosis of recipients.Unfortunately,the perplexing hepatic heterogeneity has impeded characterization of the cellular traits and molecular events that contribute to EAD.Herein,we constructed a pioneering single-cell transcriptomic landscape of human transplanted livers derived from non-EAD and EAD patients,with 12 liver samples collected from 7 donors during the cold perfusion and portal reperfusion stages.Comparison of the 75231 cells of non-EAD and EAD patients revealed an EAD-associated immune niche comprising mucosal-associated invariant T cells,granzyme B^(+)(GZMB^(+))granzyme K^(+)(GZMK^(+))natural killer cells,and S100 calcium binding protein A12^(+)(S100A12^(+))neutrophils.Moreover,we verified this immune niche and its association with EAD occurrence in two independent cohorts.Our findings elucidate the cellular characteristics of transplanted livers and the EAD-associated pathogenic immune niche at the single-cell level,thus,offering valuable insights into EAD onset. 展开更多
关键词 Human liver transplantation Early allograft dysfunction Pathogenic immune niche Single-cell analysis Cell-cell communication
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A Reference Vector-Assisted Many-Objective Optimization Algorithm with Adaptive Niche Dominance Relation
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作者 Fangzhen Ge Yating Wu +1 位作者 Debao Chen Longfeng Shen 《Intelligent Automation & Soft Computing》 2024年第2期189-211,共23页
It is still a huge challenge for traditional Pareto-dominatedmany-objective optimization algorithms to solve manyobjective optimization problems because these algorithms hardly maintain the balance between convergence... It is still a huge challenge for traditional Pareto-dominatedmany-objective optimization algorithms to solve manyobjective optimization problems because these algorithms hardly maintain the balance between convergence and diversity and can only find a group of solutions focused on a small area on the Pareto front,resulting in poor performance of those algorithms.For this reason,we propose a reference vector-assisted algorithmwith an adaptive niche dominance relation,for short MaOEA-AR.The new dominance relation forms a niche based on the angle between candidate solutions.By comparing these solutions,the solutionwith the best convergence is found to be the non-dominated solution to improve the selection pressure.In reproduction,a mutation strategy of k-bit crossover and hybrid mutation is used to generate high-quality offspring.On 23 test problems with up to 15-objective,we compared the proposed algorithm with five state-of-the-art algorithms.The experimental results verified that the proposed algorithm is competitive. 展开更多
关键词 Many-objective optimization evolutionary algorithm Pareto dominance reference vector adaptive niche
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Niches of dominant fish in the waters surrounding the Taishan Islands, China 被引量:2
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作者 杨璐 陈杰 +5 位作者 杨圣云 钟慧琪 鞠培龙 杨顺良 孙芹芹 陈明茹 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2016年第4期697-708,共12页
An index of relative importance(IRI) was employed to screen for dominant fish in the waters surrounding the Taishan Islands, China, using data from four seasonal trawl surveys undertaken between 2012 and 2013. Niche b... An index of relative importance(IRI) was employed to screen for dominant fish in the waters surrounding the Taishan Islands, China, using data from four seasonal trawl surveys undertaken between 2012 and 2013. Niche breadth and niche overlap were measured using the Feinsinger and Morisita-Horn indices, respectively, and the characteristics and seasonal variations in the niches of dominant fish were assessed via non-metric multidimensional scaling(NMDS) and cluster analysis. A total of 80 fish species, including 16 dominant species, were recorded. Only A mblychaeturichthys hexanema was dominant in all seasons. According to niche breadth values and NMDS, the 16 dominant species were grouped into the following three types:(1) wide niche breadth species, including Cynoglossus macrolepidotus, A. hexanema, and Trypauchen vagina, among others;(2) medium niche breadth species, including Setipinna taty and Johnius belangerii; and(3) narrow niche breadth species, including A trobucca nibe and Coilia mystus. Most species with a wider niche breadth were demersal fish with a lower swimming capability and even distribution. The niche breadth of migrating fish was narrower than that of settled fish. At a given spatial scale, fish with stronger swimming capabilities had a narrower niche breadth. Niche overlap, which is associated with niche specialization, ranged from 0.000 to 0.886 and had an annual mean value of 0.314. In summer and autumn, niche overlap was relatively high within species of the Sciaenidae family and within species of the Gobiidae in autumn. Dif ferences in thermophily, feeding habits, food organism abundance/distribution and predator-prey relationships af fected the niche overlap of fish in this area. Cluster analysis revealed that species with the narrowest niche breadth and lowest niche overlap values usually displayed lower aggregation and greater distribution dif ferences compared with other species. 展开更多
关键词 Taishan Islands dominant fish niche breadth niche overlap niche specialization
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Effects of dietary replacement of soybean meal with dried distillers grains with solubles on the microbiota occupying different ecological niches in the rumen of growing Hu lambs 被引量:2
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作者 Junshi Shen Zhipeng Li +1 位作者 Zhongtang Yu Weiyun Zhu 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2021年第2期677-688,共12页
Background:Diet has a profound impact on the rumen microbiota,and the impact can vary among the different rumen ecological niches(REN).This study investigated the effects of dietary replacement of soybean meal(SBM)wit... Background:Diet has a profound impact on the rumen microbiota,and the impact can vary among the different rumen ecological niches(REN).This study investigated the effects of dietary replacement of soybean meal(SBM)with dried distillers grains with solubles(DDGS)on the rumen microbiota occupying different REN of growing Hu lambs.After a 9-week feeding trial,6 lambs from each dietary treatment(SBM vs.DDGS-based diets)were slaughtered for sample collection.The microbiota of the rumen solid,liquid,and epithelium fractions was examined using amplicon sequencing analysis of bacterial 16S rRNA gene,functional prediction,and qPCR.Results:No interaction of dietary protein source(PS)and REN were detected for virtually all the measurements made in this study.The DDGS substitution resulted in very limited influence on bacterial community structure.However,the metabolic pathways predicted from 16S rRNA gene sequences varied greatly between SBM-and DDGS-based diets.The populations of rumen total bacteria,fungi,sulfate-reducing bacteria(SRB),and methanogens were not influenced by DDGS substitution,but the population of protozoa was reduced.The bacterial communities in rumen solid(RS)and liquid(RL)were similar in taxonomic composition but were different in relative abundance of some taxa.In contrast,the bacterial composition and relative abundance of rumen epithelium(RE)were greatly distinct from those of the RS and the RL.In alignment with the bacterial relative abundance,the metabolic pathways predicted from 16S rRNA genes also varied greatly among the different REN.The populations of total bacteria,protozoa,and methanogens attached to the RE were smaller than those in the RS and RL,and the fungal population on the rumen epitheliumwas smaller than that in the RS but similar to that in the RL.On the contrary,the SRB population on the RE was greater than that in the RS and RL.Conclusions:Substitution of SBM with DDGS had greater impact to the protozoa than to the other microbes,and the microbial community structure and functions at different REN are distinct and niche-adapted. 展开更多
关键词 Distillers dried grains with solubles Growing lamb MICROBIOTA Ruminal ecological niche Soybean meal
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Injectable hydrogel made from antler mesenchyme matrix for regenerative wound healing via creating a fetal-like niche 被引量:1
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作者 Guo-Kun Zhang Jing Ren +4 位作者 Ji-Ping Li Dong-Xu Wang Sheng-Nan Wang Li-Yan Shi Chun-Yi Li 《World Journal of Stem Cells》 SCIE 2023年第7期768-780,共13页
BACKGROUND Scar formation and loss of cutaneous appendages are the greatest challenges in cutaneous wound healing.Previous studies have indicated that antler reserve mesenchyme(RM)cells and their conditioned medium im... BACKGROUND Scar formation and loss of cutaneous appendages are the greatest challenges in cutaneous wound healing.Previous studies have indicated that antler reserve mesenchyme(RM)cells and their conditioned medium improved regenerative wound healing with partial recovery of cutaneous appendages.AIM To develop hydrogels from the antler RM matrix(HARM)and evaluate the effect on wound healing.METHODS We prepared the hydrogels from the HARM via enzymatic solubilization with pepsin.Then we investigated the therapeutic effects of HARM on a full-thickness cutaneous wound healing rat model using both local injections surrounding the wound and topical wound application.RESULTS The results showed that HARM accelerated wound healing rate and reduced scar formation.Also,HARM stimulated the regeneration of cutaneous appendages and blood vessels,and reduced collagen fiber aggregation.Further study showed that these functions might be achieved via creating a fetal-like niche at the wound site.The levels of fetal wound healing-related genes,including Collagen III and TGFβ3 treated with HARM were all increased,while the expression levels of Collagen I,TGFβ1,and Engrailed 1 were decreased in the healing.Moreover,the number of stem cells was increased in the fetal-like niche created by HARM,which may contribute to the regeneration of cutaneous appendages.CONCLUSION Overall,we successfully developed an injectable hydrogel made from antler RM matrix for the regenerative repair of full-thickness cutaneous wounds.We uncovered the molecular mechanism of the hydrogels in promoting regenerative wound healing,and thus pave the way for HARM to be developed for the clinic use. 展开更多
关键词 Hydrogel Antler reserve mesenchyme Regenerative wound healing Fetal-like niche
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Single-cell RNA sequencing in cornea research:Insights into limbal stem cells and their niche regulation 被引量:1
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作者 Di Sun Wei-Yun Shi Sheng-Qian Dou 《World Journal of Stem Cells》 SCIE 2023年第5期466-475,共10页
The corneal epithelium is composed of stratified squamous epithelial cells on the outer surface of the eye,which acts as a protective barrier and is critical for clear and stable vision.Its continuous renewal or wound... The corneal epithelium is composed of stratified squamous epithelial cells on the outer surface of the eye,which acts as a protective barrier and is critical for clear and stable vision.Its continuous renewal or wound healing depends on the proliferation and differentiation of limbal stem cells(LSCs),a cell population that resides at the limbus in a highly regulated niche.Dysfunction of LSCs or their niche can cause limbal stem cell deficiency,a disease that is manifested by failed epithelial wound healing or even blindness.Nevertheless,compared to stem cells in other tissues,little is known about the LSCs and their niche.With the advent of single-cell RNA sequencing,our understanding of LSC characteristics and their microenvironment has grown considerably.In this review,we summarized the current findings from single-cell studies in the field of cornea research and focused on important advancements driven by this technology,including the heterogeneity of the LSC population,novel LSC markers and regulation of the LSC niche,which will provide a reference for clinical issues such as corneal epithelial wound healing,ocular surface reconstruction and interventions for related diseases. 展开更多
关键词 CORNEA Limbal stem cells Single cell RNA sequencing HETEROGENEITY Novel markers niche regulation
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Precise tissue bioengineering and niches of mesenchymal stem cells:Their size and hierarchy matter
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作者 IGOR A.KHLUSOV LARISA S.LITVINOVA +1 位作者 KRISTINA A.YUROVA MARINA Y.KHLUSOVA 《BIOCELL》 SCIE 2022年第6期1365-1373,共9页
Stem cell microterritories(niches),as a specialized part of the extracellular matrix(ECM),are considered an important target and tool for the development of new materials,medical implants,and devices.However,tissue bi... Stem cell microterritories(niches),as a specialized part of the extracellular matrix(ECM),are considered an important target and tool for the development of new materials,medical implants,and devices.However,tissue bioengineering products that have stem cell niches of known size on the surface or in the bulk structure of artificial materials are practically unknown.This brief review attempts to draw attention to the problematic aspects of niches as specific parts of the ECM,such as their hierarchy and size for mesenchymal stromal/stem cells(MSCs).These parameters arise directly from numerous definitions of stem cell niches as specialized morphological microterritories found in various tissues.The authors of this review analyze the known information on the hierarchy of MSC microterritories by analogy with that of hematopoietic stem cells.Occasional reports on the size of artificial MSC niches compared to natural niche candidates are summarized.A consensus on a hierarchy and optimal range of niche sizes for MSCs and other stem cells is needed to accelerate the development of prototyping technologies and additive manufacturing in applications to precise tissue bioengineering and regenerative medicine. 展开更多
关键词 Mesenchymal stromal/stem cells Natural and artificial niches Classification Dimension Matrix features USEFULNESS
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The human retinal stem niches could overlap a vascular anatomical pattern
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作者 Mugurel Constantin Rusu Alexandra Diana Vrapciu 《Neural Regeneration Research》 SCIE CAS CSCD 2015年第1期39-40,共2页
Stem cells are undifferentiated cells which have the unique potential to self-renew and to supply, via intermediate stages of transit amplifying cells (TACs), differentiated cells. With- in the stem cell niches not ... Stem cells are undifferentiated cells which have the unique potential to self-renew and to supply, via intermediate stages of transit amplifying cells (TACs), differentiated cells. With- in the stem cell niches not only heterologous cells, but also differentiated progeny of stem cells provide regulation to the stem cells parents. Stem cells can differentiate in various cell types during tissue maintenance or repair. 展开更多
关键词 STEM cell The human retinal stem niches could overlap a vascular anatomical pattern MSCs Figure
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Ecological Niche Modelling Reveals the Peculiarities of Ecological Disjunction Between Two Sympatric Racerunners in Kazakhstan:Eremias lineolata(Nikolsky,1897)and Eremias scripta(Strauch,1867)
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作者 Marina A.CHIRIKOVA Dmitry V.MALAKHOV 《Asian Herpetological Research》 SCIE CSCD 2023年第2期123-137,共15页
The ecological-niche models for two sympatric species,Eremias lineolata(Nikolsky,1897)and Eremias scripta(Strauch,1867),reveal evidence of spatial and temporal disjunction in the actual niches of both species.Eremias ... The ecological-niche models for two sympatric species,Eremias lineolata(Nikolsky,1897)and Eremias scripta(Strauch,1867),reveal evidence of spatial and temporal disjunction in the actual niches of both species.Eremias lineolata demonstrates a wide range of adaptations and,at the same time,has a greater need for winter precipitation and minimal temperature than E.scripta.Possible explanations for the thermal diversity of both species are provided.Thermal variables(monthly temperatures,monthly solar radiation,etc.)are traditionally important for ectotherm animals.Interestingly,as many as half of the key variables in both species are related to different aspects of environmental water balance(precipitation,air humidity,vapor pressure).There are several ways in which moisture may impact the lizard’s life cycle.Soil humidity is related to soil temperature and may be important during winter hibernation.In summer,soil humidity may support successful embryogenesis.Precipitation during the warm months is a key factor in maintaining the moisture content of the soil.In winter,snow cover provides a better thermal balance of the soil’s top layers where winter shelters are housed.Ecological niche modeling(ENM)is an interdisciplinary approach combining the geographical,climatic,ecological,and biological aspects of the wellbeing of species.This interdisciplinary approach lifts biological studies onto a new,integrative level,providing a comprehensive view on species biology and answering the questions that might not be answered if the traditional methods for studying animals were used alone. 展开更多
关键词 ECOLOGY Kazakhstan niche modelling racerunners species distribution
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Niche differentiation shapes the bacterial diversity and composition of apple
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作者 Yimei Huang Xiaofen Chai +7 位作者 Xiaona Wang Beibei Gao Hui Li Zhenhai Han Xuefeng Xu Xinzhong Zhang Ting Wu Yi Wang 《Horticultural Plant Journal》 SCIE CAS CSCD 2023年第1期35-44,共10页
Microorganisms play an important role in plant growth,health and ecological function.It is necessary to explore the microbial community because of the significant ecological and economic value of apples(Malus x domest... Microorganisms play an important role in plant growth,health and ecological function.It is necessary to explore the microbial community because of the significant ecological and economic value of apples(Malus x domestica).However,the related bacterial communities in different ecological habitats are not clear in the unique scion/rootstock combinations of apples.In this study,the Illumina Miseq platform was used to analyze the bacterial communities in different niches(bulk soil,rhizosphere soil and roots)of two scion/rootstock combinations[Fuji/Malus xiaojinensis Cheng et Jiang(Mx)and Fuji/Malus baccata(L.)Borkh.(Mb)].The relationship between the microbial community,soil properties,and plant characters was explored.The results showed that the diversity of the bacterial community decreased from bulk soil to rhizosphere soil and then to roots.In addition,at the phylum level,Proteobacteria,Actinobacteria and Acitinobacteria were dominant and had notable divergence in different ecological niches.Distinct niches had remarkable effects on the diversity and composition of the bacterial community according to PCoA.The rootstock genotype had an effect on the bacterial composition but no effect on the diversity.pH,soil organic matter(SOM),alkaline hydrolyzable nitrogen(AN)were the main factor affecting the structure of bacterial community in rhizosphere soil,as shown by Pearson analysis.Bacteria taxa in the roots were affected by starch,fructose,sucrose and sorbitol.This study showed the microbial community structure in different ecological niches of different scion/rootstock combinations and provided some evidence for understanding the microbial-plant interaction of apple rootstocks. 展开更多
关键词 APPLE Microbial community Rootstock genotype Ecology niche
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Host niche, genotype, and field location shape the diversity and composition of the soybean microbiome
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作者 YANG Hong-jun YE Wen-wu +6 位作者 YU Ze SHEN Wei-liang LI Su-zhen WANG Xing CHEN Jia-jia WANG Yuan-chao ZHENG Xiao-bo 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2023年第8期2412-2425,共14页
Plant-associated microbes represent a key determinant of plant fitness through acquiring nutrients,promoting growth,and resisting to abiotic and biotic stresses.However,an extensive characterization of the bacterial a... Plant-associated microbes represent a key determinant of plant fitness through acquiring nutrients,promoting growth,and resisting to abiotic and biotic stresses.However,an extensive characterization of the bacterial and fungal microbiomes present in different plant compartments of soybean in field conditions has remained elusive.In this study,we investigated the effects of four niches(roots,stems,leaves,and pods),four genotypes(Andou 203,Hedou 12,Sanning 16,and Zhonghuang 13),and three field locations(Jining,Suzhou,and Xuzhou)on the diversity and composition of bacterial and fungal communities in soybean using 16S and internal transcribed spacer rRNA amplicon sequencing,respectively.The soybean microbiome significantly differed across organs.Host genotypes explained more variation in stem bacterial community composition and leaf fungal community composition.Field location significantly affected the composition of bacterial communities in all compartments and the effects were stronger in the root and stem than in the leaf and pod,whereas field location explained more variation in stem and leaf fungal community composition than in the root and pod.The relative abundances of potential soybean fungal pathogens also differed among host organs and genotypes,reflecting the niches of these microbes in the host and probably their compatibility to the host genotypes.Systematic profiling of the microbiome composition and diversity will aid the development of plant protection technologies to benefit soybean health. 展开更多
关键词 MICROBIOME SOYBEAN plant pathogen endophytes host niche GENOTYPE field location
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Allopolyploid origin and niche expansion of Rhodiola integrifolia(Crassulaceae)
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作者 Da-Lv Zhong Yuan-Cong Li Jian-Qiang Zhang 《Plant Diversity》 SCIE CAS CSCD 2023年第1期36-44,共9页
Polyploidy after hybridization between species can lead to immediate post-zygotic isolation,causing saltatory origin of new species.Although the incidence of polyploidization in plants is high,it is thought that a new... Polyploidy after hybridization between species can lead to immediate post-zygotic isolation,causing saltatory origin of new species.Although the incidence of polyploidization in plants is high,it is thought that a new polyploid lineage can succeed only if it establishes a new ecological niche divergent from its progenitor lineages.We tested the hypothesis that Rhodiola integrifolia from North America is an allopolyploid produced by R. rhodantha and R.rosea and determined whether its survival can be explained by the niche divergence hypothesis.To this end,we sequenced two low-copy nuclear genes(ncpGS and rpb2) in a phylogenetic analysis of 42 Rhodiola species and tested for niche equivalency and similarity using Schoener’s D as the index of niche overlap.Our phylogeny-based approach showed that R integrifolia possesses alleles from both R. rhodantha and rosea Dating analysis showed that the hybridization event that led to R.integrifolia occurred ca.1.67 Mya and niche modeling analysis showed that at this time,both R.rosea and R.rhodantha may have been present in Beringia,providing the opportunity for the hybridization event.We also found that the niche of R.integrifolia differs from that of its progenitors in both niche breadth and optimum.Taken together,these results confirm the hybrid origin of R.integrifolia and support the niche divergence hypothesis for this tetraploid species.Our results underscore the fact that lineages with no current overlapping distribution could produce hybrid descendants in the past,when climate oscillations made their distributions overlap. 展开更多
关键词 ALLOPOLYPLOID HYBRIDIZATION ncpGS niche shift rpb2 Schoener’s D
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Spatial niche segregation between bird species in the Białowieża primeval forest(NE Poland)
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作者 Oliwia Karpińska Katarzyna Kamionka-Kanclerska +2 位作者 Patryk Czortek Marcin K.Dyderski Dorota Czeszczewik 《Forest Ecosystems》 SCIE CSCD 2023年第4期483-493,共11页
Drivers of bird niche separation in temperate primeval forests have not yet been determined,due to the low number of intact forest sites.Here,we analyzed the general patterns of niche usage on trees by birds’assembla... Drivers of bird niche separation in temperate primeval forests have not yet been determined,due to the low number of intact forest sites.Here,we analyzed the general patterns of niche usage on trees by birds’assemblages.We tested how tree species affect the sharing of space in an assemblage of birds and their level of specialization.We conducted our study in the Białowieża primeval forest(NE Poland).During two breeding seasons,we observed bird positions on trees,divided into three vertical and six horizontal zones in 768 observation points.Based on the interaction networks framework we calculated the Kullback-Leibler distance d′as a metric of species specialization and the resource range RR index,which estimates the species’specificity based on the fraction of space utilized with a non-zero performance.The d′index was the highest in the lower understory for all parts of the tree on the basis of the position from the trunk.The RR index was the highest in the lower understory for all parts based on the position from the trunk.Regarding the tree species,the lowest d′index was observed in all tree species together,and hornbeam,whereas the highest in oak.At the tree species level,the RR index was the lowest for hornbeam.We show tree species importance in forest space sharing in the case of bird assemblages.Hornbeam,alder,and spruce are universal species that were used by birds almost entirely.In contrast,oak,lime,and maple were only partially used.Tree species with less complex structures could shape bird assemblages,as they could offer birds much fewer niches to realize.Therefore,we showed that high specialization and niche separation are drivers of high bird diversity.Consequently maintaining a diverse stand structure is crucial for biodiversity conservation. 展开更多
关键词 Tree use niche partitioning Foraging guild SPECIALIZATION Habitat filtering Foundation species Tree species effect
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Preliminary delivery efficiency prediction of nanotherapeutics into crucial cell populations in bone marrow niche
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作者 Huijuan Chen Anzhi Hu +6 位作者 Mengdi Xiao Shiyi Hong Jing Liang Quanlong Zhang Yang Xiong Mancang Gu Chaofeng Mu 《Asian Journal of Pharmaceutical Sciences》 SCIE CAS 2023年第6期113-125,共13页
Several crucial stromal cell populations regulate hematopoiesis and malignant diseases in bone marrow niches.Precise regulation of these cell types can remodel niches and develop new therapeutics.Multiple nanocarriers... Several crucial stromal cell populations regulate hematopoiesis and malignant diseases in bone marrow niches.Precise regulation of these cell types can remodel niches and develop new therapeutics.Multiple nanocarriers have been developed to transport drugs into the bone marrow selectively.However,the delivery efficiency of these nanotherapeutics into crucial niche cells is still unknown,and there is no method available for predicting delivery efficiency in these cell types.Here,we constructed a three-dimensional bone marrow niche composed of three crucial cell populations:endothelial cells(ECs),mesenchymal stromal cells(MSCs),and osteoblasts(OBs).Mimetic niches were used to detect the cellular uptake of three typical drug nanocarriers into ECs/MSCs/OBs in vitro.Less than 5%of nanocarriers were taken up by three stromal cell types,and most of themwere located in the extracellular matrix.Delivery efficiency in sinusoidal ECs,arteriole ECs,MSCs,and OBs in vivo was analyzed.The correlation analysis showed that the cellular uptake of three nanocarriers in crucial cell types in vitro is positively linear correlated with its delivery efficiency in vivo.The delivery efficiency into MSCs was remarkably higher than that into ECs and OBs,no matterwhat kind of nanocarrier.The overall efficiency into sinusoidal ECswas greatly lower than that into arteriole ECs.All nanocarriers were hard to be delivered into OBs(<1%).Our findings revealed that cell tropisms of nanocarriers with different compositions and ligand attachments in vivo could be predicted via detecting their cellular uptake in bone marrow niches in vitro.This study provided the methodology for niche-directed nanotherapeutics development. 展开更多
关键词 Bone marrow niche mimicking Drug delivery prediction Nanotherapeutics Bone marrow stromal cells
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