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Detection of circulating hepatocellular carcinoma cells in peripheral venous blood by reverse transcription-polymerase chain reaction 被引量:5
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作者 Yang Liu Meng-Chao Wu +1 位作者 Guang-Xiang Qian Bai-He Zhang From the Institute of East Hepatobiliary Surgery, Second Military Medical University, Shanghai 200438, China 《Hepatobiliary & Pancreatic Diseases International》 SCIE CAS 2002年第1期72-76,共5页
Objective: To detect circulating hepatocellular carcino-ma by demonstrating hepatocellular carcinoma cells orhepatocyte-associated mRNA in the nuclear cell com-ponent of peripheral blood (PBL).Methods: Peripheral bloo... Objective: To detect circulating hepatocellular carcino-ma by demonstrating hepatocellular carcinoma cells orhepatocyte-associated mRNA in the nuclear cell com-ponent of peripheral blood (PBL).Methods: Peripheral blood (5 ml) samples were ob-tained from 93 patients with hepatocellular carcinoma(HCC) and from 33 control subjects (9 with liver cir-rhosis after hepatitis B,14 with chronic hepatitis B,10with normal liver function). To identify HCC cells inperipheral blood, liver-specific human alpha-fetopro-tein (AFP) mRNA was amplified from total RNA ex-tracted from whole blood by reverse transcription-polymerase chain reaction.Results: AFPmRNA was detected in 50 blood samplesfrom the HCC patients (50/93, 53.8%). In contrast,there were no clinical control patients whose samplesshowed detectable AFPmRNA in PBL. The presence ofAFPmRNA in blood seemed to be correlated with thestage (by TNM classification) of HCC, the serum AFPvalue, and the presence of intrahepatic metastasis,portal vein thrombosis, tumor diameter and/or distantmetastasis. In addition, AFPmRNA was detected in theblood of 21 patients with metastasis at extrahepaticorgans (100%) in contrast to 29 (40.3%)of 72 pa-tients without metastasis.Conclusion: The presence of AFPmRNA in peripheralblood may be an indicator of malignant hepatocytes,which might predict hematogenous spreading metasta-sis of tumor cells in patients with HCC. 展开更多
关键词 liver neoplasms ALPHA-FETOPROTEIN MRNA reverse transcription-polymerase chain reaction
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Exogenous reference gene normalization for real-time reverse transcription-polymerase chain reaction analysis under dynamic endogenous transcription
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作者 Stephen Johnston Zachary Gallaher Krzysztof Czaja 《Neural Regeneration Research》 SCIE CAS CSCD 2012年第14期1064-1072,共9页
Quantitative real-time reverse transcription-polymerase chain reaction (qPCR) is widely used to investigate transcriptional changes following experimental manipulations to the nervous system. Despite the widespread ... Quantitative real-time reverse transcription-polymerase chain reaction (qPCR) is widely used to investigate transcriptional changes following experimental manipulations to the nervous system. Despite the widespread utilization of qPCR, the interpretation of results is marred by the lack of a suitable reference gene due to the dynamic nature of endogenous transcription. To address this inherent deficiency, we investigated the use of an exogenous spike-in mRNA, luciferase, as an internal reference gene for the 2ct normalization method. To induce dynamic transcription, we systemically administered capsaicin, a neurotoxJn selective for C-type sensory neurons expressing the TRPV-1 receptor, to adult male Sprague-Dawley rats. We later isolated nodose ganglia for qPCR analysis with the reference being either exogenous luciferase mRNA or the commonly used endogenous reference 13-111 tubulin. The exogenous luciferase mRNA reference clearly demonstrated the dynamic expression of the endogenous reference. Furthermore, variability of the endogenous reference would lead to misinterpretation of other genes of interest. In conclusion, traditional reference genes are often unstable under physiologically normal situations, and certainly unstable following the damage to the nervous system. The use of exogenous spike-in reference provides a consistent and easily implemented alternative for the analysis of qPCR data. 展开更多
关键词 exogenous reference gene sensory ganglia reverse transcription-polymerase chain reaction normalization INJURY neural regeneration
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Positive reverse transcription-polymerase chain reaction assay results in patients recovered from COVID-19: Report of two cases
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作者 Ke-Xin Huang Cheng He +4 位作者 Yan-Li Yang Di Huang Zhi-Xia Jiang Bang-Guo Li Heng Liu 《World Journal of Clinical Cases》 SCIE 2021年第12期2816-2822,共7页
BACKGROUND Coronavirus disease 2019(COVID-19)has spread around the globe.On February 28,2020,the World Health Organization adjusted the risk of spread and impact of COVID-19 to“very high”at the global level.Studies ... BACKGROUND Coronavirus disease 2019(COVID-19)has spread around the globe.On February 28,2020,the World Health Organization adjusted the risk of spread and impact of COVID-19 to“very high”at the global level.Studies have mainly focused on the etiology,epidemiology,and treatment of COVID-19 to limit further spread and the negative impact of the disease,while less attention has been devoted to the follow-up and reexamination of patients who recovered from COVID-19 or were released from quarantine.CASE SUMMARY This study reports two cases where patients who had negative reverse transcription-polymerase chain reaction(RT-PCR)test results and met the criteria for discharge subsequently had positive RT-PCR test results.The clinical manifestations and computed tomography(CT)findings of these patients were examined.The conversion of RT-PCR test results in these two patients may be related to false-negative and false-positive outcomes of the test.CT images helped track improvement of pulmonary lesions.CONCLUSION The timing of discharge of COVID-19 patients should be determined by comprehensive analysis of CT images and RT-PCR test results. 展开更多
关键词 COVID-19 False negative RECOVERY reverse transcription-polymerase chain reaction SARS-CoV-2 Case report
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Detection of hepatocellular carcinoma cells in the peripheral blood with reverse--transcription polymerase chain reaction
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作者 房殿春 刘为纹 +1 位作者 罗元辉 鲁荣 《Journal of Medical Colleges of PLA(China)》 CAS 1998年第2期93-96,共4页
In order to detect circulating cells of hepatocellular carcinoma(HCC) in the peripheral blood with reverse transcripition polymerase chain reaction (RT-PCR ), alpha-fetoprotein (AFP ) mRNA was tested in the blood samp... In order to detect circulating cells of hepatocellular carcinoma(HCC) in the peripheral blood with reverse transcripition polymerase chain reaction (RT-PCR ), alpha-fetoprotein (AFP ) mRNA was tested in the blood samples of 113 cases of HCC and 69 controls (including 30 cases of liver cirrhosis, 9 cases of metastatic liver cancer and 30 normal subjects). 20/43 (46. 5% ) cases of HCC and 2/30 (6. 7% ) cases of liver cirrhosis are positive and the cases of nletastatic liver cancer and normal controls were negative for human AFP(hAFP) rnRNA. The presence of hAFP mRNA in the peripheral blood seems to be correlated with intrahepatic and distant nletastasls of HCC and portal vein thrombosis. It is concluded that the presence of hAFP mRNA in the peripheral hloocl is an indicator of circulating HCC cells and can be used to diagnose the rnetastasisof HCC through henlatogenous route and RT-PCR amplification of hAFP mRNA is a sensitive and specificprocedure for detecting circulating cells of HCC. 展开更多
关键词 hepatocellular carcinoma circulating cells ALPHA-FETOPROTEIN reverse transcription-polymerase chain reaction mRNA
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Selection and Evaluation of Optimal Reference Genes for Quantitative Reverse Transcription-Polymerase Chain Reaction Analyses of Gene Expression in Human Spermatozoa
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作者 Luo Chun-Hai Tang Yun-Ge +3 位作者 Hong Shi-Hao Tang Yuan Zhang Ying Sun Fei 《Reproductive and Developmental Medicine》 CSCD 2020年第4期212-218,共7页
Objective:Optimal reference genes are critical for accurate normalization and reliable interpretation of gene expression quantification data.Recently,several strategies have been utilized for validating reference gene... Objective:Optimal reference genes are critical for accurate normalization and reliable interpretation of gene expression quantification data.Recently,several strategies have been utilized for validating reference genes in different human tissues.However,no universal reference genes have been described that accurately summarize transcriptional activity in human spermatozoa.Methods:Using quantitative reverse transcription-polymerase chain reaction(RT-qPCR),we evaluated ten commonly used candidate reference genes between two groups of human cryopreserved donor sperm with different pregnancy rates.We assessed the stability of reference genes using three different algorithms,namely geNorm,NormFinder,and BestKeeper.We then identified the most stable reference genes.Results:Male-enhanced antigen 1(MEA1)was identified as the most stably expressed reference gene,followed by testis-enhanced gene transcript(TEGT).Conclusions:We comprehensively identified MEA1 and TEGT as the most stably expressed reference genes for the normalization of gene expression data in human spermatozoa. 展开更多
关键词 Human Spermatozoa Quantitative reverse transcription-polymerase chain Reaction Reference Gene
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Preliminary research on myosin light chain kinase in rabbit liver 被引量:6
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作者 Bin Ren~1 Hua-Qing Zhu~2 Zhao-Feng Luo~1 Qing Zhou~2 Yuan Wang~2 Yu-Zhen Wang~1 1 Department of Biochemistry and Molecular Biology,University of Science and Technology of China,Hefei 230027,Anhui Province,China2 Laboratory of Molecular Biology,Anhui Medical University,Hefei 230032,Anhui Province,China 《World Journal of Gastroenterology》 SCIE CAS CSCD 2001年第6期868-871,共4页
AIM: To study preliminarily the properties of myosin light chain kinase (MLCK) in rabbit liver.METHODS: The expression of MLCK was detected by reverse transcription-polymerase chain reaction (RT-PCR);the MLCK was obt... AIM: To study preliminarily the properties of myosin light chain kinase (MLCK) in rabbit liver.METHODS: The expression of MLCK was detected by reverse transcription-polymerase chain reaction (RT-PCR);the MLCK was obtained from rabbit liver, and its activity was analyzed by γ-32P incorporation technique to detect the phosphorylation of myosin light chain.RESULTS: MLCK was expressed in rabbit liver, and the activity of the enzyme was similar to rabbit smooth muscle MLCK, and calmodulin-dependent. When the concentration was 0.65 mg-L-1, the activity was at the highest level.CONCLUSION: MLCK expressed in rabbit liver may catalyze the phosphorylation of myosin light chain, which may play important roles in the regulation of hepatic cell functions. 展开更多
关键词 MYOSIN light chain KINASE liver rabbit enzyme activity reverse transcription-polymerase chain reaction
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肝细胞癌NY-ESO-1基因/蛋白表达与临床病理特征及肿瘤转移的关系 被引量:2
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作者 张文敏 肖刚 +3 位作者 谢丹 张萌 郭爱林 文剑明 《癌症》 SCIE CAS CSCD 北大核心 2005年第5期622-626,共5页
背景与目的:NY-ESO-1属癌症-睾丸抗原家族,能激发肿瘤患者同时产生细胞免疫和体液免疫,特异杀伤肿瘤细胞,被认为是目前免疫原性最强的肿瘤抗原。本研究旨在探讨NY-ESO-1在肝细胞癌中的表达及其与肝癌临床病理特征的关系。方法:用逆转录... 背景与目的:NY-ESO-1属癌症-睾丸抗原家族,能激发肿瘤患者同时产生细胞免疫和体液免疫,特异杀伤肿瘤细胞,被认为是目前免疫原性最强的肿瘤抗原。本研究旨在探讨NY-ESO-1在肝细胞癌中的表达及其与肝癌临床病理特征的关系。方法:用逆转录聚合酶链反应(RT-PCR)分析62例肝癌和相应癌旁肝组织NY-ESO-1m RNA表达;将145例肝癌石蜡组织制成芯片(132例有效),应用免疫组织化学EliVisionTM两步法观察NY-ESO-1蛋白的表达和分布。结果:NY-ESO-1基因在肝细胞癌中的阳性率是27.4%(17/62),肝癌伴门脉癌栓者达40%(10/25),高于不伴门脉癌栓的18.9%(7/37);NY-ESO-1蛋白主要分布在肝癌细胞胞浆,在肝癌组织芯片中的阳性率为18.9%(25/132),肝癌伴转移病变者为29.6%(16/54),不伴转移病变的阳性率仅11.5%(9/78),二者比较有显著性差异(P<0.05);NY-ESO-1基因和蛋白在H BsAg阳性肝癌标本中阳性率分别为28.3%(15/53)和19.1%(22/115),AFP≥20滋g/L标本的阳性率为29.5%(13/44)和20.7%(19/93),与H BsAg阴性和AFP正常的肝癌比较均无显著性差异(P>0.05);所有癌旁肝组织均未见NY-ESO-1的表达。结论:NY-ESO-特异表达于肝癌细胞,在有转移病变的病例中有较高的阳性率,提示NY-ESO-1可能与肝癌病情进展和转移有关,可作为肝癌。 展开更多
关键词 NY—ESO-1 肝肿瘤 RT—PCR 组织芯片 临床病理特征
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Msi1基因沉默对人肝癌HepG2细胞的影响 被引量:4
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作者 王燕 章建国 +2 位作者 张曙 靳钦 卞婷婷 《交通医学》 2014年第2期115-118,共4页
目的:探讨siRNA沉默Msi1基因表达后,人肝癌HepG2细胞的增殖与凋亡的情况。方法:设计合成针对Msi1 mRNA序列的siRNA多条序列,分别转染人肝癌HepG2细胞。使用RT–PCR方法检测各组细胞Msi1基因表达情况;Western blot法检测survivin蛋白、ca... 目的:探讨siRNA沉默Msi1基因表达后,人肝癌HepG2细胞的增殖与凋亡的情况。方法:设计合成针对Msi1 mRNA序列的siRNA多条序列,分别转染人肝癌HepG2细胞。使用RT–PCR方法检测各组细胞Msi1基因表达情况;Western blot法检测survivin蛋白、caspase3蛋白表达情况;MTT法、平皿克隆实验检测HepG2细胞增殖情况;流式细胞术检测各组HepG2细胞凋亡情况。结果:(1)RT-PCR结果:转染后24 h后,序列a,b,c转染效率分别为65%,64%及62%。其抑制率分别是Msi1 siRNAa(68%)、Msi1 siRNAb(56%)、Msi1 siRNAc(35%)。(2)流式细胞术检测各组细胞凋亡:空白组、阴性组、脂质体组、Msi1 siRNAa组凋亡率分别为(4.14±0.26)%、(4.51±0.78)%、(4.19±1.21)%,(16.8±0.26)%,Msi1 siRNAa组与空白对照组比较差异有统计学意义(P<0.05)。(3)Msi1 siRNAa最能有效抑制肝癌HepG2细胞中Msi1表达,与空白对照组比较,Msi1 siRNAa组HepG2细胞生长、增殖速度明显减缓(P<0.05);survivin蛋白表达水平显著下调(P<0.05),而caspase3蛋白表达水平上调(P<0.05);Msi1 siRNAa组凋亡率增高(P<0.05)。结论:沉默Msi1可抑制人肝癌HepG2细胞的增殖,诱导其凋亡。 展开更多
关键词 原发性肝癌 Msi1基因 凋亡 增殖 HepG2细胞 逆转录聚合酶链反应 Western BLOT检测 流式细胞术 Msi1 reverse transcription-polymerase chain Reaction (RT-PCR) Flow Cytometry(FCM)
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Correlation between MMP-2 and NF-κ B expression of intracranial aneurysm 被引量:10
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作者 Wei-Tao Cheng Ning Wang 《Asian Pacific Journal of Tropical Medicine》 SCIE CAS 2013年第7期570-573,共4页
Objective:To investigate the correlation between expressions of MMP-2 and NF-κB in the intracranial aneurysm wall,and explore their role in the mechanism of the occurrence,growth and rupture of intracranial aneurysms... Objective:To investigate the correlation between expressions of MMP-2 and NF-κB in the intracranial aneurysm wall,and explore their role in the mechanism of the occurrence,growth and rupture of intracranial aneurysms.Methods:RT-PCR was used to detect the expression of MMP-2 and NF-κB mRNA of 30 cases of intracranial aneurysm tissue and 10 cases of normal intracranial arterial tissue:Immunohistochemical method was used to detect the expression of MMP-2 and NF-κB protein.Results:the semi-quantitative analysis of MMP-2 and NF-κB in aneurysms tissues and normal tissues were statistically significant different from each other(P【0 05).Immunohistochemical staining results showed NF-κB was expressed in different layers.The expression of them were positive in intimal and medial,and the expression sites were located in the nucleus.MMP-2 were expressed in different layers of the aneurysm wall,and the expressions were positive in media and extima.The MMP-2 and NF-κB-positive expression of aneurysm wall were significantly higher than in normal cerebral arteries(P【0.05).MMP-2 and NF-κB mRNA expression showed positive correlation in the aneurysm wall tissue(r = 0.689,P = 0.005). Conclusions:The expressions of MMP-2 and NF-κB in the intracranial aneurysm wall tissue were significantly higher than in the normal intracranial arterial tissues.They have a synergistic effect on the formation of intracranial aneurysms. 展开更多
关键词 INTRACRANIAL ANEURYSMS Nuclear factor-κB Matrix METALLOPROTEINASE-2 reverse transcription-polymerase chain reaction IMMUNOHISTOCHEMISTRY
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Diagnosis of nervous necrosis virus in orange-spotted grouper,Epinephelus coioides, by a rapid and convenient RT-PCR method 被引量:6
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作者 MU Yinnan LIN Kebing +1 位作者 CHEN Xinhua AO Jingqun 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2013年第10期88-92,共5页
Viral nervous necrosis (VNN) causes high mortality in marine fish, especially in the grouper, worldwide and in China. Since there is no effective vaccine or drug to deal with VNN, early detection and prevention is i... Viral nervous necrosis (VNN) causes high mortality in marine fish, especially in the grouper, worldwide and in China. Since there is no effective vaccine or drug to deal with VNN, early detection and prevention is important to block its outbreak. In this study, a reverse transcription-polymerase chain reaction (RT-PCR) was developed for the rapid, convenient, and sensitive detection of the VNN pathogen, nervous necro- sis virus (NNV), in the grouper. The whole process was completed within 3.5 h from the RNA extraction to PCR product visualization. The detection limit of this method was 200 copies of NNV RNA standard, which corresponded to 200 copies of virus particles. This RT-PCR method was specific to the NNV detection with no cross-reactivity to other fish viral disease pathogens, such as infectious pancreatic necrosis virus (IPNV), infectious hematopoietic necrosis virus (IHNV), spring viraemia of carp virus (SVCV), epizootic haematopoietic necrosis virus (EHNV), and large yellow croaker iridovirus (LYC1V). With this method, the orange-spotted grouper (Epinephelus coioides) fry from hatcheries with or without incidence of the VN- N epidemic in Fujian Province were detected. The results showed that all or 93% of the fry from the two hatcheries with incidence of the epidemic were diagnosed as positive, while 40% or 25% of fry from the t- wo hatcheries without the VNN epidemic were also detected as NNV positive, indicating that this RT-PCR method can be used for rapid, sensitive detection of NNV infection and applied in the VNN epidemic alert. 展开更多
关键词 viral nervous necrosis nervous necrosis virus orange-spotted grouper (Epinephelus coioides) reverse transcription-polymerase chain reaction DETECTION
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Expression and functional characterization of platelet-derived growth factor receptor-like gene 被引量:5
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作者 Guo, Feng-Jie Zhang, Wei-Jia +6 位作者 Li, Ya-Lin Liu, Yan Li, Yue-Hui Huang, Jian Wang, Jia-Jia Xie, Ping-Li Li, Guan-Cheng 《World Journal of Gastroenterology》 SCIE CAS CSCD 2010年第12期1465-1472,共8页
AIM:To investigate the role of platelet-derived growth factor receptor-like gene(PDGFRL)in the anti-cancer therapy for colorectal cancers(CRC).METHODS:PDGFRL mRNA and protein levels were measured by reverse transcript... AIM:To investigate the role of platelet-derived growth factor receptor-like gene(PDGFRL)in the anti-cancer therapy for colorectal cancers(CRC).METHODS:PDGFRL mRNA and protein levels were measured by reverse transcription-polymerase chain reaction(RT-PCR)and immunohistochemistry in CRC and colorectal normal tissues.PDGFRL prokaryotic expression vector was carried out in Escherichia coli(E.coli),and purified by immobilized metal affinity chromatography.The effect of PDGFRL protein on CRC HCT-116 cells was detected by 3-(4,5-dimethylthiazolyl-2)-2,5-diphenyltetrazolium bromide(MTT),clone counting,cell cycle,and wound healing assay.RESULTS:Both RT-PCR and immunohistochemistry showed that the expression of PDGFRL in colorectal normal tissues was higher than in cancer tissues.Recombinant pET22b-PDGFRL prokaryotic expression vector was successfully expressed in E.coli,and the target protein was expressed in the form of inclusion bodies.After purification and refolding,recombinant human PDGFRL(rhPDGFRL)could efficiently inhibit the proliferation and invasion of CRC HCT-116 cells detected by MTT,clone counting and wound healing assay.Moreover,rhPDGFRL arrested HCT-116 cell cycling at the G0/G1 phase.CONCLUSION:PDGFRL is a potential gene for application in the anti-cancer therapy for CRC. 展开更多
关键词 Platelet-derived growth factor receptorlike Colorectal cancer Prokaryotic expression reverse transcription-polymerase chain reaction IMMUNOHISTOCHEMISTRY
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Expression of huCdc7 in colorectal cancer 被引量:2
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作者 Hai-Jun Chen Zhen Zhu +7 位作者 Xue-Lin Wang Quan-Lin Feng Qing Wu Zheng-Ping Xu Jiang Wu Xiao-Feng Yu Hong-Liang Qian Qi Lu 《World Journal of Gastroenterology》 SCIE CAS 2013年第20期3130-3133,共4页
AIM:To detect the expression of huCdc7 in colorectal cancer.METHODS:The mRNA and protein expression of huCdc7 in 39 colorectal cancer tissue specimens and matched tumor-adjacent normal colorectal tissue specimens was ... AIM:To detect the expression of huCdc7 in colorectal cancer.METHODS:The mRNA and protein expression of huCdc7 in 39 colorectal cancer tissue specimens and matched tumor-adjacent normal colorectal tissue specimens was detected by reverse transcription-polymerase chain reaction and immunohistochemistry,respectively.RESULTS:The relative expression level of huCdc7 mRNA in colorectal cancer was significantly higher than that in tumor-adjacent normal colorectal tissues(0.03675 ± 1.00 vs 0.01199 ± 0.44,P < 0.05).huCdc7-positive cells displayed brown granules in the nucleus.Tumor tissues contained many huCdc7-positive cells,whereas normal colorectal tissues contained very few positive cells.CONCLUSION:huCdc7 may play an important role in the development and progression of colorectal cancer. 展开更多
关键词 huCdc7 Semiquantitative reverse transcription-polymerase chain reaction COLORECTAL cancer
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In advanced gastric cancer:Prognosis and treatment of patients with positive peritoneal cytology 被引量:2
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作者 Francesco Frattini Stefano Rausei +3 位作者 Corrado Chiappa Francesca Rovera Luigi Boni Gianlorenzo Dionigi 《World Journal of Gastrointestinal Surgery》 SCIE CAS 2013年第5期135-137,共3页
Positive peritoneal cytology in gastric cancer is classified as M1 disease by the 7thEdition of American Joint Committee on Cancer staging system.With the introduction of laparoscopy and peritoneal washing cytology in... Positive peritoneal cytology in gastric cancer is classified as M1 disease by the 7thEdition of American Joint Committee on Cancer staging system.With the introduction of laparoscopy and peritoneal washing cytology in the staging of gastric cancer a new category of patients has been identified.These are patients with no macroscopic peritoneal metastases but with peritoneal cytology positive(P0C1).Prognosis and treatment of such patientsrepresent a controversial issue.We evaluate the state of the art of staging system in gastric cancer and discusss tandardisation in staging and treatment procedures.There is still a lack of uniformity in the use of laparoscopy with peritoneal cytology in clinical decision making and in the surgical treatment for gastric cancer.Survival of this patient subset remains poor.Multimodal therapies and new therapeutic strategies are required to improve the survival of these patients. 展开更多
关键词 Advanced gastric cancer PERITONEAL WASHING CYTOLOGY STAGING LAPAROSCOPY reverse transcription-polymerase chain reaction
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Significance of combined detection of LunX mRNA and tumor markers in diagnosis of lung carcinoma 被引量:3
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作者 Hui Yu Xiuying Huang +4 位作者 Zhihua Zhu Yi Hu Wei Ou Lanjun Zhang Ningning Zhou 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2014年第1期89-94,共6页
Objective:To evaluate the significance of combined detection of LunX mRNA,carcinoembryonic antigen (CEA),neuron-specific enolase (NSE),and cytokeratin 21-1 fragment (CYFRA21-1) in clinical diagnosis of lung car... Objective:To evaluate the significance of combined detection of LunX mRNA,carcinoembryonic antigen (CEA),neuron-specific enolase (NSE),and cytokeratin 21-1 fragment (CYFRA21-1) in clinical diagnosis of lung carcinoma.Methods:Based on the quantitative RT-PCR and chemiluminescence immunoassay,the expression levels of LunX mRNA,CEA,NSE,and CYFRA21-1 in 113 patients with lung carcinoma (case group) and 30 healthy participants (control group) were detected.Meantime,the sensitivity,specificity,and accuracy of the combination detection were also explored.Results:The positive rates of LunX mRNA in peripheral blood and CEA,NSE,and CYFRA21-1 in serum were significandy higher in case group than those in control group (x2=17.295,16.825,19.148,and 17.450; P<0.05).There was no statistical significance when positive rate of LunX mRNA was evaluated among different pathological types (x2=0.047,P>0.05).The positive rate of LunX mRNA in stage Ⅰ + Ⅱ,Ⅲ,and Ⅳ had a significandy increasing tendency (x2=10.565,32.462,P<0.05).The positive rate of CYFRA21-1 was highest in squamous carcinoma (78.5%),the positive rate of NSE was highest in small cell carcinoma (86.7%),and the positive rate of CEA wag highest in lung adenocarcinoma (80.4%).The sensitivity and accuracy of the combination detection were 91.1% and 88.1%,respectively.Conclusions:The combined detection of LunX mRNA and tumor markers (TMs) including CEA,NSE,and CYFRA21-1 in peripheral blood is helpful to increase the diagnostic accuracy of lmg cancer.Also,it can inform the pathological typing of lung carcinoma. 展开更多
关键词 Lung cancer reverse transcription-polymerase chain reaction LunX mRNA carcinoembryonic antigen (CEA) neuron-specific enolase (NSE) cytokeratin 21-1 fragment (CYFRA21-1)
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Methods for the extraction and RNA profiling of exosomes 被引量:5
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作者 Emily Zeringer Mu Li +6 位作者 Tim Barta Jeoffrey Schageman Ketil Winther Pedersen Axl Neurauter Susan Magdaleno Robert Setterquist Alexander V Vlassov 《World Journal of Methodology》 2013年第1期11-18,共8页
AIM:To develop protocols for isolation of exosomes and characterization of their RNA content.METHODS:Exosomes were extracted from He La cell culture media and human blood serum using the Total exosome isolation(from c... AIM:To develop protocols for isolation of exosomes and characterization of their RNA content.METHODS:Exosomes were extracted from He La cell culture media and human blood serum using the Total exosome isolation(from cell culture media)reagent,and Total exosome isolation(from serum)reagent respectively.Identity and purity of the exosomes was confirmed by Nanosight?analysis,electron microscopy,and Western blots for CD63 marker.Exosomal RNA cargo was recovered with the Total exosome RNA and protein isolation kit.Finally,RNA was profiled using Bioanalyzer and quantitative reverse transcriptionpolymerase chain reaction(q RT-PCR)methodology.RESULTS:Here we describe a novel approach for robust and scalable isolation of exosomes from cell culture media and serum,with subsequent isolation and analysis of RNA residing within these vesicles.The isolation procedure is completed in a fraction of the time,compared to the current standard protocols utilizing ultracentrifugation,and allows to recover fully intact exosomes in higher yields.Exosomes were found tocontain a very diverse RNA cargo,primarily short sequences 20-200 nt(such as mi RNA and fragments of m RNA),however longer RNA species were detected as well,including full-length 18S and 28S r RNA.CONCLUSION:We have successfully developed a set of reagents and a workflow allowing fast and efficient extraction of exosomes,followed by isolation of RNA and its analysis by q RT-PCR and other techniques. 展开更多
关键词 EXOSOMES MICROVESICLES Cell culture media SERUM RNA Quantitative reverse transcription-polymerase chain reaction SEQUENCING
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Infiltration Related miRNAs in Bladder Urothelial Carcinoma 被引量:2
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作者 解鹏 徐锋 +6 位作者 程文 高建平 张征宇 葛京平 位志峰 徐晓峰 刘有黄 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 2012年第4期576-580,共5页
This study aimed to investigate infiltration related microRNAs(miRNAs) in bladder urothelial carcinoma(BUC).Twenty patients with BUC were enrolled and divided into 2 groups according to infiltration or not:infiltratin... This study aimed to investigate infiltration related microRNAs(miRNAs) in bladder urothelial carcinoma(BUC).Twenty patients with BUC were enrolled and divided into 2 groups according to infiltration or not:infiltrating BUC group(n=12) and non-infiltrating BUC group(n=8).Gene chip was used to detect infiltration related miRNAs in the BUC samples.In other recruited 17 patients with BUC who were divided into infiltrating BUC samples(n=14) and non-infiltrating BUC samples(n=3),and in 4 BUC cell lines(EJ,5637,T24 and BIU-87),the expression of miRNAs was assayed by using reverse transcription-polymerase chain reaction(RT-PCR).In infiltrating BUC group,as compared with non-infiltrating BUC group,there were 7 differentially expressed miRNAs:hsa-miR-29c,hsa-miR-200a,hsa-miR-378,hsa-miR-429,hsa-miR-200c and hsa-miR-141 were up-regulated,while hsa-miR-451 was down-regulated.In the BUC samples,the results of RT-PCR were consistent with those by the miRNA array.In the cancer cell lines,RT-PCR in T24 only revealed the similar expression pattern of miRNAs to that by the miRNA array.It is suggested that infiltration of BUC is related with different expression of miRNAs,which may provide a novel platform for further study on function and action mechanism of miRNAs. 展开更多
关键词 MICRORNA bladder urothelial carcinoma infiltration related miRNAs reverse transcription-polymerase chain reaction
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Combination of Cytogenetic Analysis and Molecular Screening in Patients with de novo Acute Myeloid Leukemia 被引量:2
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作者 耿哲 张恒 +5 位作者 王迪 肖毅 王娜 李春蕊 黄亮 周剑峰 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 2012年第4期501-510,共10页
Nowadays the role of genetic findings in determining the diagnosis,therapy and prognosis of acute myeloid leukemia(AML) has become more valuable.To improve and validate the detection of clonal chromosomal aberrations ... Nowadays the role of genetic findings in determining the diagnosis,therapy and prognosis of acute myeloid leukemia(AML) has become more valuable.To improve and validate the detection of clonal chromosomal aberrations in leukemia,we designed a combined application of karyotyping with multiplex reverse transcription-polymerase chain reaction(RT-PCR) and fluorescence in situ hybridization(FISH),and addressed the expression and distribution of fusion genes among the subtypes of Chinese adult patients with de novo AML.Multiplex RT-PCR assays were performed on 477 samples from newly diagnosed AML patients,and cytogenetic data were obtained from 373 of them by R or G banding techniques and those in some cases were confirmed by FISH.The PCR products in some suspected cases were tested by two-directional sequencing.The results showed that except unqualified samples,fusion genes were detected by multiplex RT-PCR in 211 of 474 patients(44.51%),including AML1-ETO,CBFβ-MYH11,PML-RARα,PLZF-RARα,NPM-RARα,MLL rearrangements,BCR-ABL,DEK-CAN,SET-CAN,TEL-PDGFR,TLS-ERG,AML1-MDS1(EVI-1).In 373 patients,who took both multiplex RT-PCR and karyotype analysis,the detection rate of chromosomal aberrations by using multiplex RT-PCR and karyotyping was 160/373(42.89%) and 179/373(47.98%) respectively,and the combination could optimize the detection rate of clonal genetic abnormalities to 216/373(57.90%).The PCR results from 11 cases 'normal' in karyotyping but abnormal in RT-PCR for MLL rearrangements were confirmed by two-directional sequencing.It is concluded that karyotype studies remain the cornerstone for genetic testing;conventional cytogenetics and molecular-based methods are complementary tests for the detection of clonal genetic aberrations in AML,especially for the cryptic or submicroscopic aberrations.Once a genetic marker has been identified by combined analysis,it could be used to monitor residual disease during/after chemotherapy,by quantitative RT-PCR and/or FISH. 展开更多
关键词 acute myeloid leukemia chromosome aberration KARYOTYPING multiplex reverse transcription-polymerase chain reaction fluorescence in situ hybridization
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Silencing the enhancer of zeste homologue 2,Ezh2,represses axon regeneration of dorsal root ganglion neurons 被引量:1
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作者 Ting-Ting Guo Ying Zhao +4 位作者 Wei-Xiao Huang Tao Zhang Li-Li Zhao Xiao-Song Gu Song-Lin Zhou 《Neural Regeneration Research》 SCIE CAS CSCD 2022年第7期1518-1525,共8页
Recovery from injury to the peripheral nervous system is different from that of the central nervous system in that it can lead to gene reprogramming that can induce the expression of a series of regeneration-associate... Recovery from injury to the peripheral nervous system is different from that of the central nervous system in that it can lead to gene reprogramming that can induce the expression of a series of regeneration-associated genes.This eventually leads to axonal regeneration of injured neurons.Although some regeneration-related genes have been identified,the regulatory network underlying axon regeneration remains largely unknown.To explore the regulator of axon regeneration,we performed RNA sequencing of lumbar L4 and L5 dorsal root ganglion(DRG)neurons at different time points(0,3,6,12 hours,1,3 and 7 days)after rat sciatic nerve crush.The isolation of neurons was carried out by laser capture microscopy combined with NeuN immunofluorescence staining.We found 1228 differentially expressed genes in the injured sciatic nerve tissue.The hub genes within these differentially expressed genes include Atf3,Jun,Myc,Ngf,Fgf2,Ezh2,Gfap and Il6.We verified that the expression of the enhancer of zeste homologue 2 gene(Ezh2)was up-regulated in DRG neurons after injury,and this up-regulation differed between large-and small-sized dorsal root ganglion neurons.To investigate whether the up-regulation of Ezh2 impacts axonal regeneration,we silenced Ezh2 with siRNA in cultured DRG neurons and found that the growth of the newborn axons was repressed.In our investigation into the regulatory network of Ezh2 by interpretive phenomenal analysis,we found some regulators of Ezh2(including Erk,Il6 and Hif1a)and targets(including Atf3,Cdkn1a and Smad1).Our findings suggest that Ezh2,as a nerve regeneration-related gene,participates in the repair of the injured DRG neurons,and knocking down the Ezh2 in vitro inhibits the axonal growth of DRG neurons.All the experimental procedures approved by the Administration Committee of Experimental Animals of Jiangsu Province of China(approval No.S20191201-201)on March 21,2019. 展开更多
关键词 axon regeneration dorsal root ganglion neurons EZH2 IB4 laser capture microscopy NF160/200 quantitative reverse transcription-polymerase chain reaction sciatic nerve crush scRNA-seq siRNA
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Altered microRNA expression profiles in a rat model of spina bifida 被引量:1
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作者 Pan Qin Lin Li +5 位作者 Da Zhang Qiu-liang Liu Xin-rang Chen He-ying Yang Ying-zhong Fan Jia-xiang Wang 《Neural Regeneration Research》 SCIE CAS CSCD 2016年第3期502-507,共6页
Micro RNAs(mi RNAs) are dynamically regulated during neurodevelopment,yet few reports have examined their role in spina bifida.In this study,we used an established fetal rat model of spina bifida induced by intragas... Micro RNAs(mi RNAs) are dynamically regulated during neurodevelopment,yet few reports have examined their role in spina bifida.In this study,we used an established fetal rat model of spina bifida induced by intragastrically administering olive oil-containing all-trans retinoic acid to dams on day 10 of pregnancy.Dams that received intragastric administration of all-trans retinoic acid-free olive oil served as controls.The mi RNA expression profile in the amniotic fluid of rats at 20 days of pregnancy was analyzed using an mi RNA microarray assay.Compared with that in control fetuses,the expression of mi RNA-9,mi RNA-124 a,and mi RNA-138 was significantly decreased(〉 2-fold),whereas the expression of mi RNA-134 was significantly increased(〉 4-fold) in the amniotic fluid of rats with fetuses modeling spina bifida.These results were validated using real-time quantitative reverse-transcription polymerase chain reaction.Hierarchical clustering analysis of the microarray data showed that these differentially expressed mi RNAs could distinguish fetuses modeling spina bifida from control fetuses.Our bioinformatics analysis suggested that these differentially expressed mi RNAs were associated with many cytological pathways,including a nervous system development signaling pathway.These findings indicate that further studies are warranted examining the role of mi RNAs through their regulation of a variety of cell functional pathways in the pathogenesis of spina bifida.Such studies may provide novel targets for the early diagnosis and treatment of spina bifida. 展开更多
关键词 nerve regeneration spina bifida amniotic fluid all-trans retinoic acid microarray micro RNA reverse transcription-polymerase chain reaction MAPK neural regeneration
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Changes of Calpain mRNA Level in Rat Hepatocyte after Recurrent Intraperitoneal Administration of Ceium Nitrate
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作者 杨维东 王艇 +3 位作者 刘洁生 龚孟濂 雷衡毅 杨燕生 《Journal of Rare Earths》 SCIE EI CAS CSCD 2001年第2期134-137,共4页
The effect of Ce(NO3)(3) on expression of calpain in rat hepatocyte was studied by means of reverse transcription-polymerase chain reaction (BT-PCR). The result shows that high dose of Ce(NO3)(3)(50 mg.kg(-1)) induces... The effect of Ce(NO3)(3) on expression of calpain in rat hepatocyte was studied by means of reverse transcription-polymerase chain reaction (BT-PCR). The result shows that high dose of Ce(NO3)(3)(50 mg.kg(-1)) induces the increase of expression of calpain mRNA, but low dose of Ce(NO3)(3)(1 mg.kg(-1)) does not. Possible mechanism for this phenomenon was discussed. 展开更多
关键词 rare earths cerium nitrate reverse transcription-polymerase chain reaction CALPAIN
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