目的研究G_(2)/S期应答相关蛋白1(G_(2) and S phase-expressed protein 1,GTSE1)在肝细胞癌(hepatocellular carcinoma,HCC)中的表达、免疫学作用和预后分析,及其潜在作用机制。方法使用公共数据库癌症基因组图谱(The Cancer Genome At...目的研究G_(2)/S期应答相关蛋白1(G_(2) and S phase-expressed protein 1,GTSE1)在肝细胞癌(hepatocellular carcinoma,HCC)中的表达、免疫学作用和预后分析,及其潜在作用机制。方法使用公共数据库癌症基因组图谱(The Cancer Genome Atlas,TCGA)提供的数据,用Kaplan-Meier、肿瘤免疫评估资源(Tumor Immune Estimation Resource,TIMER)数据库和基因表达谱交互分析(Gene Expression Profiling Interactive Analysis,GEPIA)数据库进行GTSE1基因表达、免疫学作用及预后分析,通过免疫组化实验验证GTSE1在临床样本中的表达,应用R软件对GTSE1相关差异基因进行基因本体(gene ontology,GO)和京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes,KEGG)富集分析。结果GTSE1在人类癌组织中显著高表达,且与肝细胞癌预后不良显著相关(P<0.05);GTSE1基因表达与HCC中浸润性免疫细胞的丰度显著相关(P<0.001)。GTSE1相关的差异表达基因主要富集于核分裂、细胞器裂变、离子通道活性等基因模块;其参与的信号通路主要包括神经活性配体-受体的相互作用、细胞周期等。结论GTSE1在HCC中的表达显著上调并与患者预后不良显著相关,且在免疫细胞浸润中发挥重要作用,可作为HCC的预后标志物和免疫治疗靶点。展开更多
Using BrUTP incorporation and statistical analysis, the authors investigated RNA transcription in the interphase nuclei in Physarum polycephalum Schw. The rRNA synthesis in the nucleolus continued actively throughout ...Using BrUTP incorporation and statistical analysis, the authors investigated RNA transcription in the interphase nuclei in Physarum polycephalum Schw. The rRNA synthesis in the nucleolus continued actively throughout the interphase, while in nucleoplasm hnRNA was transcribed at law levels in S phase and actively in G(2) phase. The rate of nucleoplasm RNA transcription was doubled between early S phase and late S phase, and a 5-6 folds increase was detected between the early S phase and G(2) phase.展开更多
In this study, a new parameter, S phase cell percentage （S fraction） normalized BrdU （SFN-BrdU） incorporation rate, was introduced to detect $ arrest. The results showed a positive linear correlation between the B...In this study, a new parameter, S phase cell percentage （S fraction） normalized BrdU （SFN-BrdU） incorporation rate, was introduced to detect $ arrest. The results showed a positive linear correlation between the BrdU incorporation rate and the S fraction in unperturbed 16HBE cells. Theoretical analysis indicated that only S arrest could result in a decrease in the SFN-BrdU incorporation rate. Additionally, the decrease in SFN-BrdU incorporation rate and the activation of DNA damage checkpoints further demonstrated that S arrest was induced by diethyl sulfate treatment of 16HBE cells. In conclusion, $FN-BrdU incorporation rate can be used to detecting S arrest.展开更多
Different fused-core stationary phase chemistries（C18,Amide,Phenyl-hexyl and Peptide ES-C18） were used for the analysis of 21 structurally representative model peptides.In addition,the effects of the mobile phase co...Different fused-core stationary phase chemistries（C18,Amide,Phenyl-hexyl and Peptide ES-C18） were used for the analysis of 21 structurally representative model peptides.In addition,the effects of the mobile phase composition（ACN or MeOH as organic modifier;formic acid or acetic acid,as acidifying component） on the column selectivity,peak shape and overall chromatographic performance were evaluated.The RP-amide column,combined with a formic acid-acetonitrile based gradient system,performed as best.A peptide reversed-phase retention model is proposed,consisting of 5 variables：log SumAA,log Sv,clog P,log nHDon and log nHAcc.Quantitative structure-retention relationship（QSRR） models were constructed for 16 different chromatographic systems.The accuracy of this peptide retention model was demonstrated by the comparison between predicted and experimentally obtained retention times,explaining on average 86% of the variability.Moreover,using an external set of 5 validation peptides,the predictive power of the model was also demonstrated.This peptide retention model includes the novel in-silico calculated amino acid descriptor,AA,which was calculated from log P,3D-MoRSE,RDF and WHIM descriptors.展开更多
The purpose of this study is to improve the surface properties of austenitic stainless steel using the double-folded electrode screen plasma nitriding (SPN) process. In general, the S-phase is well-known for its excel...The purpose of this study is to improve the surface properties of austenitic stainless steel using the double-folded electrode screen plasma nitriding (SPN) process. In general, the S-phase is well-known for its excellent properties such as improved hardness and wear resistance along with sustained corrosion resistance. The concentrated nitrogen via SPN process was injected to form S-phase with time at 713 K. This study was carried out under the conditions of 44 at% of nitrogen injection, which was higher than 25 at% known as the condition of no precipitation of S-phase formed by the SPN process, and 20 K higher than the maximum temperature without precipitation phase. The hardness analysis of stainless steel sample treated by the SPN process at 713 K showed a much higher value than the typical nitriding hardness at a depth of lower nitrogen than the maximum nitrogen concentration. The SPN 20 hr treated specimen showed the average value of 2339 HV while 40 hr showed the average value of 2215 HV. The result is attributed to the concentrated nitrogen formed in the SPN process reacting with the alloying elements contained in the base material to form fine precipitates, thus producing a synergy effect of the extreme hardening effect;that is, the movement of precipitates and dislocations due to the GP-zone (Guinier-Preston zone).展开更多
文摘目的研究G_(2)/S期应答相关蛋白1(G_(2) and S phase-expressed protein 1,GTSE1)在肝细胞癌(hepatocellular carcinoma,HCC)中的表达、免疫学作用和预后分析,及其潜在作用机制。方法使用公共数据库癌症基因组图谱(The Cancer Genome Atlas,TCGA)提供的数据,用Kaplan-Meier、肿瘤免疫评估资源(Tumor Immune Estimation Resource,TIMER)数据库和基因表达谱交互分析(Gene Expression Profiling Interactive Analysis,GEPIA)数据库进行GTSE1基因表达、免疫学作用及预后分析,通过免疫组化实验验证GTSE1在临床样本中的表达,应用R软件对GTSE1相关差异基因进行基因本体(gene ontology,GO)和京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes,KEGG)富集分析。结果GTSE1在人类癌组织中显著高表达,且与肝细胞癌预后不良显著相关(P<0.05);GTSE1基因表达与HCC中浸润性免疫细胞的丰度显著相关(P<0.001)。GTSE1相关的差异表达基因主要富集于核分裂、细胞器裂变、离子通道活性等基因模块;其参与的信号通路主要包括神经活性配体-受体的相互作用、细胞周期等。结论GTSE1在HCC中的表达显著上调并与患者预后不良显著相关,且在免疫细胞浸润中发挥重要作用,可作为HCC的预后标志物和免疫治疗靶点。
文摘Using BrUTP incorporation and statistical analysis, the authors investigated RNA transcription in the interphase nuclei in Physarum polycephalum Schw. The rRNA synthesis in the nucleolus continued actively throughout the interphase, while in nucleoplasm hnRNA was transcribed at law levels in S phase and actively in G(2) phase. The rate of nucleoplasm RNA transcription was doubled between early S phase and late S phase, and a 5-6 folds increase was detected between the early S phase and G(2) phase.
基金supported by the National Nature Science Foundation of China(Nos.81370079 and 81001253)the Beijing Natural Science Foundation(No.7132122)
文摘In this study, a new parameter, S phase cell percentage （S fraction） normalized BrdU （SFN-BrdU） incorporation rate, was introduced to detect $ arrest. The results showed a positive linear correlation between the BrdU incorporation rate and the S fraction in unperturbed 16HBE cells. Theoretical analysis indicated that only S arrest could result in a decrease in the SFN-BrdU incorporation rate. Additionally, the decrease in SFN-BrdU incorporation rate and the activation of DNA damage checkpoints further demonstrated that S arrest was induced by diethyl sulfate treatment of 16HBE cells. In conclusion, $FN-BrdU incorporation rate can be used to detecting S arrest.
基金funded by a Ph.D.grant of "Institute for the Promotion of Innovation through Science and Technology in Flanders(IWT-Vlaanderen)"(No.091241 for MD and 073402 for SVD)the Special Research Fund of the Ghent University (Grant no.BOF 01J22510 for EW and BOF 01D38811 for SS)
文摘Different fused-core stationary phase chemistries（C18,Amide,Phenyl-hexyl and Peptide ES-C18） were used for the analysis of 21 structurally representative model peptides.In addition,the effects of the mobile phase composition（ACN or MeOH as organic modifier;formic acid or acetic acid,as acidifying component） on the column selectivity,peak shape and overall chromatographic performance were evaluated.The RP-amide column,combined with a formic acid-acetonitrile based gradient system,performed as best.A peptide reversed-phase retention model is proposed,consisting of 5 variables：log SumAA,log Sv,clog P,log nHDon and log nHAcc.Quantitative structure-retention relationship（QSRR） models were constructed for 16 different chromatographic systems.The accuracy of this peptide retention model was demonstrated by the comparison between predicted and experimentally obtained retention times,explaining on average 86% of the variability.Moreover,using an external set of 5 validation peptides,the predictive power of the model was also demonstrated.This peptide retention model includes the novel in-silico calculated amino acid descriptor,AA,which was calculated from log P,3D-MoRSE,RDF and WHIM descriptors.
文摘The purpose of this study is to improve the surface properties of austenitic stainless steel using the double-folded electrode screen plasma nitriding (SPN) process. In general, the S-phase is well-known for its excellent properties such as improved hardness and wear resistance along with sustained corrosion resistance. The concentrated nitrogen via SPN process was injected to form S-phase with time at 713 K. This study was carried out under the conditions of 44 at% of nitrogen injection, which was higher than 25 at% known as the condition of no precipitation of S-phase formed by the SPN process, and 20 K higher than the maximum temperature without precipitation phase. The hardness analysis of stainless steel sample treated by the SPN process at 713 K showed a much higher value than the typical nitriding hardness at a depth of lower nitrogen than the maximum nitrogen concentration. The SPN 20 hr treated specimen showed the average value of 2339 HV while 40 hr showed the average value of 2215 HV. The result is attributed to the concentrated nitrogen formed in the SPN process reacting with the alloying elements contained in the base material to form fine precipitates, thus producing a synergy effect of the extreme hardening effect;that is, the movement of precipitates and dislocations due to the GP-zone (Guinier-Preston zone).
