We used spatial, global trend and post-blocking analysis to examine the effectiveness of a progeny trial in a tree breeding program for Chinese fir (Cunninghamia lanceolata (Lamb.) Hook) on a hilly site with an en...We used spatial, global trend and post-blocking analysis to examine the effectiveness of a progeny trial in a tree breeding program for Chinese fir (Cunninghamia lanceolata (Lamb.) Hook) on a hilly site with an environmental gradient from hill top to bottom. Diameter at breast height (DBH) and tree height data had significant spatial auto-correlations among rows and columns. Adding a firstorder separable autoregressive term more effectively modelled the spatial variation than did the incomplete block (IB) model used for the experimental design. The spatial model also accounted for effects of experimental design factors and greatly reduced residual variances. The spatial analysis rel- ative to the IB analysis improved estimation of genetic parameters with the residual variance reduced 13 and 19% for DBH and tree height, respectively; heritability increased 35 and 51% for DBH and tree height, respectively; and genetic gain improved 3-5%. Fitting global trend and postblocking did not improve the analyses under IB model. The use of a spatial model or combined with a design model is recommended for forest genetic trials, particularly with global trend and local spatial variation of hilly sites.展开更多
Fraxinus mandshurica is one of the ancient relict flora species originated from the Tertiary period, which is mainly produced in the eastern mountains in Northeast China. It has an important scientific value for study...Fraxinus mandshurica is one of the ancient relict flora species originated from the Tertiary period, which is mainly produced in the eastern mountains in Northeast China. It has an important scientific value for studying the Tertiary flora and the Quaternary glacial climate. In order to make rational use of the natural genetic resources of F. mandshurica , and to increase the scientific and technological added value of improved varieties, this study used the method of positional observation of fixed standard fields to discuss the genetic variations of tree height and DBH of the natural populations and its open-pollinated progenies, systematically analyze the heritability and genetic gains in growth characters based on the analysis of progeny test, growth dynamic and heredity effects. The populations with good growth, stress resistance and adaptability were selected. The results showed that there were extremely significant difference in the growth characters among the natural populations, and the coefficients of variance for tree height (22.99%) were smaller, while the coefficients of variance for DBH (41.37%) were larger. On the other hand, there were extremely significant differences in the growth characters among the open-pollinated progenies, and the interaction between these progenies and the blocks was significant. Meanwhile, the growth characters had strong heritability, high genetic gain, and remarkable heredity effects. The heritability of tree height and DBH were 0.825 and 0.781, and the genetic gains were 15.16% and 25.85%, respectively. Therefore, Shanhetun (SHT) and Xinglong (XIL) were determined to be excellent natural populations both in the growth, resistance and adaptation with growth traits as the main evaluation index, which could be widely applied in the advanced generation improvement breeding.展开更多
The major goal for long-term poplar breeding can be formulated as maximizing annual progress in Group Merit Gain at a given annual budget (GMG/Y*). To evaluate different breeding scenarios, a deterministic simulato...The major goal for long-term poplar breeding can be formulated as maximizing annual progress in Group Merit Gain at a given annual budget (GMG/Y*). To evaluate different breeding scenarios, a deterministic simulator BREEDING CYCLE ANALYZER covering the most important aspects (gain, cost, time, technique, and gene diversity) of a full breeding cycle was used. The breeding strategies considered was based on pairwise crossing of the selected breeding population and balanced within family selection for the next breeding population. A main scenario and a number of alternative scenarios within these constraints were evaluated using estimates of the best available inputs for poplars. In focus was a comparison between three different testing scenarios for selecting the parents mated to create future breeding generations, thus selecting based on phenotype, clone test or progeny test. For the main scenario, the highest GMG/Y, and the optimal selection age for clone, phenotype and progeny strategies were 0.7480 %, 0.6989% and 0.4675%; 7, 6, and 11 years respectively. Clone test was best except when heritability was high, plant price was high or total budget was low; phenotype strategy was the second except for the case of extremely low narrow-sense heritability, for which the progeny strategy was a little more efficient than phenotype strategy. GMG/Y was markedly affected by narrow-sense heritability, additive variance at mature age, rotation age, plant-dependent cost, total budget and the time needed to produce the test plants, while diversity loss and recombination cost had rather weak effect on GMG/Y. Short rotation age and cheap testing cost favoured all three testing strategies. Comparably short rotation age, low plant-dependent cost and high total budget seem to promote early selection for progeny strategy.展开更多
Based on the 6-year-old young forests of 40 cypress(Cupressus funebris) families from four provenances(Fengdu County, Youyang County and Zhong County of Chongqing City, and Qiandao Lake in Zhejiang Province), differen...Based on the 6-year-old young forests of 40 cypress(Cupressus funebris) families from four provenances(Fengdu County, Youyang County and Zhong County of Chongqing City, and Qiandao Lake in Zhejiang Province), differences in growth traits between families and provenances were studied to select excellent families, so as to provide necessary data support for the upgrading of cypress seed gardens and inferior thinning of seed gardens. The results showed that there were significant differences in tree height, diameter at one meter height, crown width and growth potential between families and provenances. The coefficients of variation among families were 10.25%, 7.19%, 5.91% and 0.98%, respectively, and the coefficients of variation in tree height and diameter at one meter height among provenances were 7.25% and 12.58%, respectively, indicating that the tree height and diameter at one meter height of the superior cypress tree families were rich in variation among families and provenances, and there was potential for high-generation breeding. According to the selection rate of 15%, six excellent families for afforestation(Feng 8, Shi 4, Feng 1, Ye 14, Shi 3, and Ye 6) were screened. The average diameter at one meter height, tree height and crown width of the six excellent families were, respectively, 2.97 cm, 3.39 and 0.78 m, which were 18.82%, 12.70% and 15.42% higher than the family average, respectively, and 15.09%, 9.79% and 15.53% higher than the control group, respectively.展开更多
[Objectives]This study was conducted to rationally and effectively use natural genetic resources of white birch(Betula platyphylla Suk.),and improve the scientific and technological content of improved varieties.[Meth...[Objectives]This study was conducted to rationally and effectively use natural genetic resources of white birch(Betula platyphylla Suk.),and improve the scientific and technological content of improved varieties.[Methods]With the progeny of the white birch populations naturally distributed in northern China as objects,based on genetic effect analysis and comprehensive evaluation,the genetic variation,heritability and genetic gain of the growth characters in the progeny forest were systematically analyzed,by which populations or individuals with good growth vigor and strong stress resistance and adaptability were finally selected.[Results]There were extremely significant differences in the growth characters between the natural populations of white birch in northern China.The variation was the smallest in tree height,followed by crown width,and largest in DBH,and the average coefficients of variation were 20.56%,32.25%and 33.00%,respectively.The differences in characters between progeny of the same population were also extremely significant.The growth characters of white birch were more controlled by genes,and the genetic gains were larger.The heritability of tree height,DBH and crown width was 0.971,0.816 and 0.576,respectively,and the genetic gains were 15.97%,21.54%and 13.87%,respectively.[Conclusions]With the growth characters as the main evaluation indexes,taking various influencing factors into account,the Shanxi[SX]population,Hebei[HB]population and Liaoning[LN]population were selected to be excellent populations,and LN305,SX516 and HB403 were excellent individuals,which are advised to be widely used in multi-generation genetic improvement breeding.展开更多
Flowering time is critically important for crop yield, and detection of its genetic factors with strongly associated DNA markers is necessary in breeding programs. This study was undertaken to validate the quantitativ...Flowering time is critically important for crop yield, and detection of its genetic factors with strongly associated DNA markers is necessary in breeding programs. This study was undertaken to validate the quantitative trait loci (QTLs) underlying flowering time of sorghum based on the association between genotypes at SSR marker loci and flowering time in F3 family lines from self-pollinated heterozygous F2 plants developed by crossing between "SC112"---an early flowering variety from Ethiopia and "Kikuchi Zairai"--a late flowering variety from Japan. The results showed that the SSR markers linked to the QTLs on sorghum chromosomes 1, 2, 3, 5b, 7 and 8b were significantly (P 〈 0.05) associated with flowering time, and these markers and the QTLs reported previously are valid. On the other hand, the genotypes at the marker locus SB596 of qFT1-2 on chromosome 1 was not significantly associated with flowering time. The valid DNA markers, SB258 in qFTI-1, SB 1512 in qFT2, SB 1839 in qFT3, SB3369 in qFT5b, SB4096 in qFT7 and SB4540 and SB4660 in qFT8b, might be useful for DNA-marker assisted breeding.展开更多
Tree growth traits (tree height, DBH and stem volume) and survival from two 9-year-old, open-pollinated progeny tests of Chinese fir were investigated for heri- tability, genotype × environment interaction, age...Tree growth traits (tree height, DBH and stem volume) and survival from two 9-year-old, open-pollinated progeny tests of Chinese fir were investigated for heri- tability, genotype × environment interaction, age-age genetic correlation and selection efficiency. The 97 and 79 families planted at two sites were collected from the thirdcycle seed orchard. Individual heritability was estimated between 0.05 and 0.21 for tree height, DBH, and volume and between 0.45 and 1.0 for survival. Family heritability was between 0.20 and 1.14. Significant genotype x envi- ronment interaction was observed for the three growth traits. Type B genetic correlation was between 0.41 and 0.67 with an increasing trend as tree grows. High age-age genetic correlation was observed with correlation reaching 0.9 after age 4 for height, DBH, and volume. The genetic gains were estimated at 3.26, 3.39 and 5.98 % for tree height, DBH, and volume with 10 % selection intensity. The implication for advanced tree breeding in Chinese fir is discussed.展开更多
To evaluate the relationships among clones and open pollinated families from the same plus trees and to select elite breeding materials,growth,and wood characteristics of 33-year-old Pinus korainsis clones and familie...To evaluate the relationships among clones and open pollinated families from the same plus trees and to select elite breeding materials,growth,and wood characteristics of 33-year-old Pinus korainsis clones and families were measured and analyzed.The results show that growth and wood characters varied significantly.The variation due to clonal effects was higher than that of family effects.The ratio of genetic to phenotypic coefficient of variation of clones in growth and wood traits was above 90%,and the repeatability of these characteristics was more than 0.8,whereas the ratio of genetic to phenotypic coefficient of variation of families was above 90%.The broad-sense heritability of all characteristics exceeded 0.4,and the narrow-sense family heritability of growth traits was less than 0.3.Growth characteristics were positively correlated with each other,but most wood properties were weakly correlated in both clones and families.Fiber length and width were positively correlated between clones and families.Using the membership function method,eleven clones and four families were selected as superior material for improved diameter growth and wood production,and two families from clonal and open-pollinated trees showed consistently better performance.Generally,selection of the best clones is an effective alternative to deployment of families as the repeatability estimates from clonal trees were higher than narrow-sense heritability estimates from open pollinated families.The results provide valuable insight for improving P.koraiensis breeding programs and subsequent genetic improvement.展开更多
Suppose that a QTL affecting milk production trait of dairy cattle has been identified, and the relative dis-tances between the QTL and the markers are known without error. The relative efficiency of pre-selection of ...Suppose that a QTL affecting milk production trait of dairy cattle has been identified, and the relative dis-tances between the QTL and the markers are known without error. The relative efficiency of pre-selection of young bulls before progeny-testing with marker-assisted BLUP (MBLUP) over conventional progeny-testing (i.e. random selection be-fore progeny-testing) for five generations was studied using Monte Carlo simulation. Different numbers of QTL alleles (two or infinite), initial frequencies of the favorable QTL allele (0.1 and 0.5, when the QTL has two alleles), distances between the adjacent markers (5 cM or 20 cM), and ratios of the QTL variance to the genetic variance (10%, 25%, and 50%) were considered in the simulation. The results showed that the relative efficiency of MBLUP was higher when the marker distance was 5 cM than that when the distance was 20 cM. The larger the QTL allelic effect, the lower the MBLUP efficiency. The relative superiority of MBLUP was higher when the QTL had two alleles and the frequency of the favorable QTL allele was low in the base population. The relative superiority of MBLUP decreased with the pro-gress of generation in all cases and the decreasing rate was getting higher with the increase of marker density and QTL effect.展开更多
基金funded by the Natural Science Foundation of the Jiangsu Higher Education Institutions of China(Grant No.15KJA220002)Priority Academic Program Development of Jiangsu Higher Education Institutions(PAPD)Fujian Province Science and Technology Research funding on the fourth Tree Breeding Cycle Program of Chinese fir(Grant No.Min Lin 2016-1)
文摘We used spatial, global trend and post-blocking analysis to examine the effectiveness of a progeny trial in a tree breeding program for Chinese fir (Cunninghamia lanceolata (Lamb.) Hook) on a hilly site with an environmental gradient from hill top to bottom. Diameter at breast height (DBH) and tree height data had significant spatial auto-correlations among rows and columns. Adding a firstorder separable autoregressive term more effectively modelled the spatial variation than did the incomplete block (IB) model used for the experimental design. The spatial model also accounted for effects of experimental design factors and greatly reduced residual variances. The spatial analysis rel- ative to the IB analysis improved estimation of genetic parameters with the residual variance reduced 13 and 19% for DBH and tree height, respectively; heritability increased 35 and 51% for DBH and tree height, respectively; and genetic gain improved 3-5%. Fitting global trend and postblocking did not improve the analyses under IB model. The use of a spatial model or combined with a design model is recommended for forest genetic trials, particularly with global trend and local spatial variation of hilly sites.
基金Supported by the Project of Heilongjiang Provincial Science and Technology Department(GC04B116)the Forest Germplasm Resources Platform Operation Service Project of China(2011DKA21003-02)the Special Fund Project for the Scientific Research of the Forest Public Welfare Industry of China(201204307-07)
文摘Fraxinus mandshurica is one of the ancient relict flora species originated from the Tertiary period, which is mainly produced in the eastern mountains in Northeast China. It has an important scientific value for studying the Tertiary flora and the Quaternary glacial climate. In order to make rational use of the natural genetic resources of F. mandshurica , and to increase the scientific and technological added value of improved varieties, this study used the method of positional observation of fixed standard fields to discuss the genetic variations of tree height and DBH of the natural populations and its open-pollinated progenies, systematically analyze the heritability and genetic gains in growth characters based on the analysis of progeny test, growth dynamic and heredity effects. The populations with good growth, stress resistance and adaptability were selected. The results showed that there were extremely significant difference in the growth characters among the natural populations, and the coefficients of variance for tree height (22.99%) were smaller, while the coefficients of variance for DBH (41.37%) were larger. On the other hand, there were extremely significant differences in the growth characters among the open-pollinated progenies, and the interaction between these progenies and the blocks was significant. Meanwhile, the growth characters had strong heritability, high genetic gain, and remarkable heredity effects. The heritability of tree height and DBH were 0.825 and 0.781, and the genetic gains were 15.16% and 25.85%, respectively. Therefore, Shanhetun (SHT) and Xinglong (XIL) were determined to be excellent natural populations both in the growth, resistance and adaptation with growth traits as the main evaluation index, which could be widely applied in the advanced generation improvement breeding.
基金This study was supported by Kempe Foundation, the ChinaScholarship Council (CSC) and Jiangsu Hi-tech foundation (BG2003306)
文摘The major goal for long-term poplar breeding can be formulated as maximizing annual progress in Group Merit Gain at a given annual budget (GMG/Y*). To evaluate different breeding scenarios, a deterministic simulator BREEDING CYCLE ANALYZER covering the most important aspects (gain, cost, time, technique, and gene diversity) of a full breeding cycle was used. The breeding strategies considered was based on pairwise crossing of the selected breeding population and balanced within family selection for the next breeding population. A main scenario and a number of alternative scenarios within these constraints were evaluated using estimates of the best available inputs for poplars. In focus was a comparison between three different testing scenarios for selecting the parents mated to create future breeding generations, thus selecting based on phenotype, clone test or progeny test. For the main scenario, the highest GMG/Y, and the optimal selection age for clone, phenotype and progeny strategies were 0.7480 %, 0.6989% and 0.4675%; 7, 6, and 11 years respectively. Clone test was best except when heritability was high, plant price was high or total budget was low; phenotype strategy was the second except for the case of extremely low narrow-sense heritability, for which the progeny strategy was a little more efficient than phenotype strategy. GMG/Y was markedly affected by narrow-sense heritability, additive variance at mature age, rotation age, plant-dependent cost, total budget and the time needed to produce the test plants, while diversity loss and recombination cost had rather weak effect on GMG/Y. Short rotation age and cheap testing cost favoured all three testing strategies. Comparably short rotation age, low plant-dependent cost and high total budget seem to promote early selection for progeny strategy.
基金Supported by Assistance Fund for National Seed Base of Forest Tree
文摘Based on the 6-year-old young forests of 40 cypress(Cupressus funebris) families from four provenances(Fengdu County, Youyang County and Zhong County of Chongqing City, and Qiandao Lake in Zhejiang Province), differences in growth traits between families and provenances were studied to select excellent families, so as to provide necessary data support for the upgrading of cypress seed gardens and inferior thinning of seed gardens. The results showed that there were significant differences in tree height, diameter at one meter height, crown width and growth potential between families and provenances. The coefficients of variation among families were 10.25%, 7.19%, 5.91% and 0.98%, respectively, and the coefficients of variation in tree height and diameter at one meter height among provenances were 7.25% and 12.58%, respectively, indicating that the tree height and diameter at one meter height of the superior cypress tree families were rich in variation among families and provenances, and there was potential for high-generation breeding. According to the selection rate of 15%, six excellent families for afforestation(Feng 8, Shi 4, Feng 1, Ye 14, Shi 3, and Ye 6) were screened. The average diameter at one meter height, tree height and crown width of the six excellent families were, respectively, 2.97 cm, 3.39 and 0.78 m, which were 18.82%, 12.70% and 15.42% higher than the family average, respectively, and 15.09%, 9.79% and 15.53% higher than the control group, respectively.
基金Supported by Heilongjiang Provincial Science and Technology Department Project(GC04B116)National Forest Tree Germplasm Resource Platform Running Service Project(2011DKA21003-02)National Forestry Public Welfare Industry Research Project(201204307-07)
文摘[Objectives]This study was conducted to rationally and effectively use natural genetic resources of white birch(Betula platyphylla Suk.),and improve the scientific and technological content of improved varieties.[Methods]With the progeny of the white birch populations naturally distributed in northern China as objects,based on genetic effect analysis and comprehensive evaluation,the genetic variation,heritability and genetic gain of the growth characters in the progeny forest were systematically analyzed,by which populations or individuals with good growth vigor and strong stress resistance and adaptability were finally selected.[Results]There were extremely significant differences in the growth characters between the natural populations of white birch in northern China.The variation was the smallest in tree height,followed by crown width,and largest in DBH,and the average coefficients of variation were 20.56%,32.25%and 33.00%,respectively.The differences in characters between progeny of the same population were also extremely significant.The growth characters of white birch were more controlled by genes,and the genetic gains were larger.The heritability of tree height,DBH and crown width was 0.971,0.816 and 0.576,respectively,and the genetic gains were 15.97%,21.54%and 13.87%,respectively.[Conclusions]With the growth characters as the main evaluation indexes,taking various influencing factors into account,the Shanxi[SX]population,Hebei[HB]population and Liaoning[LN]population were selected to be excellent populations,and LN305,SX516 and HB403 were excellent individuals,which are advised to be widely used in multi-generation genetic improvement breeding.
文摘Flowering time is critically important for crop yield, and detection of its genetic factors with strongly associated DNA markers is necessary in breeding programs. This study was undertaken to validate the quantitative trait loci (QTLs) underlying flowering time of sorghum based on the association between genotypes at SSR marker loci and flowering time in F3 family lines from self-pollinated heterozygous F2 plants developed by crossing between "SC112"---an early flowering variety from Ethiopia and "Kikuchi Zairai"--a late flowering variety from Japan. The results showed that the SSR markers linked to the QTLs on sorghum chromosomes 1, 2, 3, 5b, 7 and 8b were significantly (P 〈 0.05) associated with flowering time, and these markers and the QTLs reported previously are valid. On the other hand, the genotypes at the marker locus SB596 of qFT1-2 on chromosome 1 was not significantly associated with flowering time. The valid DNA markers, SB258 in qFTI-1, SB 1512 in qFT2, SB 1839 in qFT3, SB3369 in qFT5b, SB4096 in qFT7 and SB4540 and SB4660 in qFT8b, might be useful for DNA-marker assisted breeding.
基金funded by the Fujian Province Science and Technology Research funding for the Tree Breeding Program of Chinese fir(Min Lin 2009-4 and Min Lin Ke2013-1)Twelfth Five Year Plan in areas like national science and technology plan project(2012BAD01B0201)the Innovative Research Team of the Educational Department of China and the Innovative Research Team of the Universities of Jiangsu Province
文摘Tree growth traits (tree height, DBH and stem volume) and survival from two 9-year-old, open-pollinated progeny tests of Chinese fir were investigated for heri- tability, genotype × environment interaction, age-age genetic correlation and selection efficiency. The 97 and 79 families planted at two sites were collected from the thirdcycle seed orchard. Individual heritability was estimated between 0.05 and 0.21 for tree height, DBH, and volume and between 0.45 and 1.0 for survival. Family heritability was between 0.20 and 1.14. Significant genotype x envi- ronment interaction was observed for the three growth traits. Type B genetic correlation was between 0.41 and 0.67 with an increasing trend as tree grows. High age-age genetic correlation was observed with correlation reaching 0.9 after age 4 for height, DBH, and volume. The genetic gains were estimated at 3.26, 3.39 and 5.98 % for tree height, DBH, and volume with 10 % selection intensity. The implication for advanced tree breeding in Chinese fir is discussed.
基金supported by the Jilin Province Science and Technology Department Key Research and Development Project(20200402094N C)。
文摘To evaluate the relationships among clones and open pollinated families from the same plus trees and to select elite breeding materials,growth,and wood characteristics of 33-year-old Pinus korainsis clones and families were measured and analyzed.The results show that growth and wood characters varied significantly.The variation due to clonal effects was higher than that of family effects.The ratio of genetic to phenotypic coefficient of variation of clones in growth and wood traits was above 90%,and the repeatability of these characteristics was more than 0.8,whereas the ratio of genetic to phenotypic coefficient of variation of families was above 90%.The broad-sense heritability of all characteristics exceeded 0.4,and the narrow-sense family heritability of growth traits was less than 0.3.Growth characteristics were positively correlated with each other,but most wood properties were weakly correlated in both clones and families.Fiber length and width were positively correlated between clones and families.Using the membership function method,eleven clones and four families were selected as superior material for improved diameter growth and wood production,and two families from clonal and open-pollinated trees showed consistently better performance.Generally,selection of the best clones is an effective alternative to deployment of families as the repeatability estimates from clonal trees were higher than narrow-sense heritability estimates from open pollinated families.The results provide valuable insight for improving P.koraiensis breeding programs and subsequent genetic improvement.
基金supported by the National Key Basic Research Program“973”(Grant Nos.G2000016103)the Program of the Ministry of Education for Supporting Key Members of Universities
文摘Suppose that a QTL affecting milk production trait of dairy cattle has been identified, and the relative dis-tances between the QTL and the markers are known without error. The relative efficiency of pre-selection of young bulls before progeny-testing with marker-assisted BLUP (MBLUP) over conventional progeny-testing (i.e. random selection be-fore progeny-testing) for five generations was studied using Monte Carlo simulation. Different numbers of QTL alleles (two or infinite), initial frequencies of the favorable QTL allele (0.1 and 0.5, when the QTL has two alleles), distances between the adjacent markers (5 cM or 20 cM), and ratios of the QTL variance to the genetic variance (10%, 25%, and 50%) were considered in the simulation. The results showed that the relative efficiency of MBLUP was higher when the marker distance was 5 cM than that when the distance was 20 cM. The larger the QTL allelic effect, the lower the MBLUP efficiency. The relative superiority of MBLUP was higher when the QTL had two alleles and the frequency of the favorable QTL allele was low in the base population. The relative superiority of MBLUP decreased with the pro-gress of generation in all cases and the decreasing rate was getting higher with the increase of marker density and QTL effect.