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Selection and application of four QTLs for grain protein content in modern wheat cultivars
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作者 Zihui Liu Xiangjun Lai +4 位作者 Yijin Chen Peng Zhao Xiaoming Wang Wanquan Ji Shengbao Xu 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2024年第8期2557-2570,共14页
The grain protein content(GPC)is the key parameter for wheat grain nutritional quality.This study conducted a resampling GWAS analysis using 406 wheat accessions across eight environments,and identified four previousl... The grain protein content(GPC)is the key parameter for wheat grain nutritional quality.This study conducted a resampling GWAS analysis using 406 wheat accessions across eight environments,and identified four previously reported GPC QTLs.An analysis of 87 landraces and 259 modern cultivars revealed the loss of superior GPC haplotypes,especially in Chinese cultivars.These haplotypes were preferentially adopted in different agroecological zones and had broad effects on wheat yield and agronomic traits.Most GPC QTLs did not significantly reduce yield,suggesting that high GPC can be achieved without a yield penalty.The results of this study provide a reference for future GPC breeding in wheat using the four identified QTLs. 展开更多
关键词 BREEDING grain protein content haplotype selection and application WHEAT
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Genetic variation and selection of 10-year-old Eucalyptus camaldulensis based on wind damage index and wood properties
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作者 Xiuhua Shang Zhihua Wu +2 位作者 Xiaoming Li Youshuang Wang Peijian Zhang 《Journal of Forestry Research》 SCIE EI CAS CSCD 2024年第6期173-184,共12页
Typhoons are becoming frequent and intense with ongoing climate change,threatening ecological security and healthy forest development in coastal areas.Eucalyptus of a predominant introduced species in southern China,f... Typhoons are becoming frequent and intense with ongoing climate change,threatening ecological security and healthy forest development in coastal areas.Eucalyptus of a predominant introduced species in southern China,faces significant growth challenges because of typhoon.Therefore,it is vital to investigate the variation of related traits and select superior breeding materials for genetic improvement.Variance,genetic parameter,and correlation analyses were carried out on wind damage indices and eight wood proper-ties in 88 families from 11 provenances of 10-year-old Euca-lyptus camaldulensis.The selection index equation was used for evaluating multiple traits and selecting superior prov-enances and family lines as future breeding material.The results show that all traits were highly significantly differ-ent at provenance and family levels,with the wind damage index having the highest coefficient of genetic variation.The heritability of each trait ranged from 0.48 to 0.87,with the wind damage index,lignin and hemicellulose contents,and microfibril angle having the highest heritabilities.The wind damage index had a positive genetic correlation with wood density,a negative correlation with lignin content,a negative phenotypic correlation and a negative genetic correlation with microfibril angle.Wind damage index and genetic progress in the selection of eight wood traits varied from 7.2%to 614.8%.Three provenances and 12 superior families were selected.The genetic gains of the wind damage index were 10.2%and 33.9%for provenances and families,and these may be starting material for genetic modification for wind resistance in eucalyptus and for their dissemination to typhoon-prone coastal areas of southern China. 展开更多
关键词 Eucalyptus camaldulensis Wind damage index Wood properties Genetic variation Comprehensive selection
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Chromosome-level genome and population genomics of the intermediate horseshoe bat(Rhinolophus affinis)reveal the molecular basis of virus tolerance in Rhinolophus and echolocation call frequency variation
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作者 Le Zhao Jiaqing Yuan +8 位作者 Guiqiang Wang Haohao Jing Chen Huang Lulu Xu Xiao Xu Ting Sun Wu Chen Xiuguang Mao Gang Li 《Zoological Research》 SCIE CSCD 2024年第5期1147-1160,共14页
Horseshoe bats(genus Rhinolophus,family Rhinolophidae)represent an important group within chiropteran phylogeny due to their distinctive traits,including constant high-frequency echolocation,rapid karyotype evolution,... Horseshoe bats(genus Rhinolophus,family Rhinolophidae)represent an important group within chiropteran phylogeny due to their distinctive traits,including constant high-frequency echolocation,rapid karyotype evolution,and unique immune system.Advances in evolutionary biology,supported by high-quality reference genomes and comprehensive whole-genome data,have significantly enhanced our understanding of species origins,speciation mechanisms,adaptive evolutionary processes,and phenotypic diversity.However,genomic research and understanding of the evolutionary patterns of Rhinolophus are severely constrained by limited data,with only a single published genome of R.ferrumequinum currently available.In this study,we constructed a high-quality chromosome-level reference genome for the intermediate horseshoe bat(R.affinis).Comparative genomic analyses revealed potential genetic characteristics associated with virus tolerance in Rhinolophidae.Notably,we observed expansions in several immune-related gene families and identified various genes functionally associated with the SARS-CoV-2 signaling pathway,DNA repair,and apoptosis,which displayed signs of rapid evolution.In addition,we observed an expansion of the major histocompatibility complex class II(MHC-II)region and a higher copy number of the HLA-DQB2 gene in horseshoe bats compared to other chiropteran species.Based on whole-genome resequencing and population genomic analyses,we identified multiple candidate loci(e.g.,GLI3)associated with variations in echolocation call frequency across R.affinis subspecies.This research not only expands our understanding of the genetic characteristics of the Rhinolophus genus but also establishes a valuable foundation for future research. 展开更多
关键词 Reference-quality genome Comparative genomics Population genomics Positive selection Bats
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The suitability assessment on site selection for bottom seeding scallop culture based on analytic hierarchy process
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作者 Ziniu ZHANG Zhenyan WANG +2 位作者 Guihua LI Meihan ZHAO Wenjian LI 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第2期647-663,共17页
Scallop culture is an important way of bottom-seeding marine ranching,which is of great significance to improve the current situation of fishery resources.However,there are some problems in site-selection evaluation o... Scallop culture is an important way of bottom-seeding marine ranching,which is of great significance to improve the current situation of fishery resources.However,there are some problems in site-selection evaluation of marine ranching,such as imperfect criteria system,complex structure,untargeted criteria quantification,etc.In addition,no site-selection evaluation method of bottom-seeding culture areas for scallops is available.Therefore,we established a hierarchy structure model according to the analytic hierarchy process(AHP)theory,in which social,physical,chemical,and biological environments are used as main criteria,and marine functional zonation,water depth,current,water temperature,salinity,substrate type,water quality,sediment quality,red tide,phytoplankton,and zooplankton are used as sub-criteria,on which a multi-parameter evaluation system is set up.Meanwhile,the dualism method,assignment method,and membership function method were used to quantify sub-criteria,and a quantitative evaluation for the entire criteria was added,including the evaluation and analysis of two types of unsuitable environmental situations.By overall consideration in scallop yield,quality,and marine ranching construction objectives,the weight of the main criteria could be determined.Five grades in the suitability corresponding to the evaluation result were divided,and the Python language was used to create an evaluation system for efficient calculation and intuitive presentation of the evaluation outcome.Eight marine cases were simulated based on existing survey data,and the results prove that the method is feasible for evaluating and analyzing the site selection of bottom-seeding culture areas for scallops under various environmental situations.The proposed evaluation method can be promoted for the site selection of bottom-seeding marine ranching.This study provided theoretical and methodological references for the site selection evaluation of other types of marine ranching. 展开更多
关键词 marine ranching bottom-seeding scallops site selection evaluation analytic hierarchy process evaluation system
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Data-driven prediction of dimensionless quantities for semi-infinite target penetration by integrating machine-learning and feature selection methods
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作者 Qingqing Chen Xinyu Zhang +2 位作者 Zhiyong Wang Jie Zhang Zhihua Wang 《Defence Technology(防务技术)》 SCIE EI CAS CSCD 2024年第10期105-124,共20页
This study employs a data-driven methodology that embeds the principle of dimensional invariance into an artificial neural network to automatically identify dominant dimensionless quantities in the penetration of rod ... This study employs a data-driven methodology that embeds the principle of dimensional invariance into an artificial neural network to automatically identify dominant dimensionless quantities in the penetration of rod projectiles into semi-infinite metal targets from experimental measurements.The derived mathematical expressions of dimensionless quantities are simplified by the examination of the exponent matrix and coupling relationships between feature variables.As a physics-based dimension reduction methodology,this way reduces high-dimensional parameter spaces to descriptions involving only a few physically interpretable dimensionless quantities in penetrating cases.Then the relative importance of various dimensionless feature variables on the penetration efficiencies for four impacting conditions is evaluated through feature selection engineering.The results indicate that the selected critical dimensionless feature variables by this synergistic method,without referring to the complex theoretical equations and aiding in the detailed knowledge of penetration mechanics,are in accordance with those reported in the reference.Lastly,the determined dimensionless quantities can be efficiently applied to conduct semi-empirical analysis for the specific penetrating case,and the reliability of regression functions is validated. 展开更多
关键词 Data-driven dimensional analysis PENETRATION Semi-infinite metal target Dimensionless numbers Feature selection
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Comparison of debris flow susceptibility assessment methods:support vector machine,particle swarm optimization,and feature selection techniques
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作者 ZHAO Haijun WEI Aihua +3 位作者 MA Fengshan DAI Fenggang JIANG Yongbing LI Hui 《Journal of Mountain Science》 SCIE CSCD 2024年第2期397-412,共16页
The selection of important factors in machine learning-based susceptibility assessments is crucial to obtain reliable susceptibility results.In this study,metaheuristic optimization and feature selection techniques we... The selection of important factors in machine learning-based susceptibility assessments is crucial to obtain reliable susceptibility results.In this study,metaheuristic optimization and feature selection techniques were applied to identify the most important input parameters for mapping debris flow susceptibility in the southern mountain area of Chengde City in Hebei Province,China,by using machine learning algorithms.In total,133 historical debris flow records and 16 related factors were selected.The support vector machine(SVM)was first used as the base classifier,and then a hybrid model was introduced by a two-step process.First,the particle swarm optimization(PSO)algorithm was employed to select the SVM model hyperparameters.Second,two feature selection algorithms,namely principal component analysis(PCA)and PSO,were integrated into the PSO-based SVM model,which generated the PCA-PSO-SVM and FS-PSO-SVM models,respectively.Three statistical metrics(accuracy,recall,and specificity)and the area under the receiver operating characteristic curve(AUC)were employed to evaluate and validate the performance of the models.The results indicated that the feature selection-based models exhibited the best performance,followed by the PSO-based SVM and SVM models.Moreover,the performance of the FS-PSO-SVM model was better than that of the PCA-PSO-SVM model,showing the highest AUC,accuracy,recall,and specificity values in both the training and testing processes.It was found that the selection of optimal features is crucial to improving the reliability of debris flow susceptibility assessment results.Moreover,the PSO algorithm was found to be not only an effective tool for hyperparameter optimization,but also a useful feature selection algorithm to improve prediction accuracies of debris flow susceptibility by using machine learning algorithms.The high and very high debris flow susceptibility zone appropriately covers 38.01%of the study area,where debris flow may occur under intensive human activities and heavy rainfall events. 展开更多
关键词 Chengde Feature selection Support vector machine Particle swarm optimization Principal component analysis Debris flow susceptibility
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Physical and numerical investigations of target stratum selection for ground hydraulic fracturing of multiple hard roofs
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作者 Binwei Xia Yanmin Zhou +2 位作者 Xingguo Zhang Lei Zhou Zikun Ma 《International Journal of Mining Science and Technology》 SCIE EI CAS CSCD 2024年第5期699-712,共14页
Ground hydraulic fracturing plays a crucial role in controlling the far-field hard roof,making it imperative to identify the most suitable target stratum for effective control.Physical experiments are conducted based ... Ground hydraulic fracturing plays a crucial role in controlling the far-field hard roof,making it imperative to identify the most suitable target stratum for effective control.Physical experiments are conducted based on engineering properties to simulate the gradual collapse of the roof during longwall top coal caving(LTCC).A numerical model is established using the material point method(MPM)and the strain-softening damage constitutive model according to the structure of the physical model.Numerical simulations are conducted to analyze the LTCC process under different hard roofs for ground hydraulic fracturing.The results show that ground hydraulic fracturing releases the energy and stress of the target stratum,resulting in a substantial lag in the fracturing of the overburden before collapse occurs in the hydraulic fracturing stratum.Ground hydraulic fracturing of a low hard roof reduces the lag effect of hydraulic fractures,dissipates the energy consumed by the fracture of the hard roof,and reduces the abutment stress.Therefore,it is advisable to prioritize the selection of the lower hard roof as the target stratum. 展开更多
关键词 Target stratum selection Ground hydraulic fracturing Hard roof control Fracture network Material point method
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A Feature Selection Method Based on Hybrid Dung Beetle Optimization Algorithm and Slap Swarm Algorithm
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作者 Wei Liu Tengteng Ren 《Computers, Materials & Continua》 SCIE EI 2024年第8期2979-3000,共22页
Feature Selection(FS)is a key pre-processing step in pattern recognition and data mining tasks,which can effectively avoid the impact of irrelevant and redundant features on the performance of classification models.In... Feature Selection(FS)is a key pre-processing step in pattern recognition and data mining tasks,which can effectively avoid the impact of irrelevant and redundant features on the performance of classification models.In recent years,meta-heuristic algorithms have been widely used in FS problems,so a Hybrid Binary Chaotic Salp Swarm Dung Beetle Optimization(HBCSSDBO)algorithm is proposed in this paper to improve the effect of FS.In this hybrid algorithm,the original continuous optimization algorithm is converted into binary form by the S-type transfer function and applied to the FS problem.By combining the K nearest neighbor(KNN)classifier,the comparative experiments for FS are carried out between the proposed method and four advanced meta-heuristic algorithms on 16 UCI(University of California,Irvine)datasets.Seven evaluation metrics such as average adaptation,average prediction accuracy,and average running time are chosen to judge and compare the algorithms.The selected dataset is also discussed by categorizing it into three dimensions:high,medium,and low dimensions.Experimental results show that the HBCSSDBO feature selection method has the ability to obtain a good subset of features while maintaining high classification accuracy,shows better optimization performance.In addition,the results of statistical tests confirm the significant validity of the method. 展开更多
关键词 Feature selection dung beetle optimization KNN transfer function HBCSSDBO
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Joint User Association and Satellite Selection for Satellite-Terrestrial Integrated networks
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作者 Qiu Wenjing Liu Aijun Han Chen 《China Communications》 SCIE CSCD 2024年第10期240-255,共16页
In this paper, we investigate a cooperation mechanism for satellite-terrestrial integrated networks. The terrestrial relays act as the supplement of traditional small cells and cooperatively provide seamless coverage ... In this paper, we investigate a cooperation mechanism for satellite-terrestrial integrated networks. The terrestrial relays act as the supplement of traditional small cells and cooperatively provide seamless coverage for users in the densely populated areas.To deal with the dynamic satellite backhaul links and backhaul capacity caused by the satellite mobility, severe co-channel interference in both satellite backhaul links and user links introduced by spectrum sharing,and the difference demands of users as well as heterogeneous characteristics of terrestrial backhaul and satellite backhaul, we propose a joint user association and satellite selection scheme to maximize the total sum rate. The optimization problem is formulated via jointly considering the influence of dynamic backhaul links, individual requirements and targeted interference management strategies, which is decomposed into two subproblems: user association and satellite selection. The user association is formulated as a nonconvex optimization problem, and solved through a low-complexity heuristic scheme to find the most suitable access point serving each user. Then, the satellite selection is resolved based on the cooperation among terrestrial relays to maximize the total backhaul capacity with the minimum date rate constraints. Finally,simulation results show the effectiveness of the proposed scheme in terms of total sum rate and power efficiency of TRs' backhaul. 展开更多
关键词 dynamic backhaul links interference management satellite selection satellite-terrestrial integrated networks user association
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A Heuristic Radiomics Feature Selection Method Based on Frequency Iteration and Multi-Supervised Training Mode
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作者 Zhigao Zeng Aoting Tang +2 位作者 Shengqiu Yi Xinpan Yuan Yanhui Zhu 《Computers, Materials & Continua》 SCIE EI 2024年第5期2277-2293,共17页
Radiomics is a non-invasive method for extracting quantitative and higher-dimensional features from medical images for diagnosis.It has received great attention due to its huge application prospects in recent years.We... Radiomics is a non-invasive method for extracting quantitative and higher-dimensional features from medical images for diagnosis.It has received great attention due to its huge application prospects in recent years.We can know that the number of features selected by the existing radiomics feature selectionmethods is basically about ten.In this paper,a heuristic feature selection method based on frequency iteration and multiple supervised training mode is proposed.Based on the combination between features,it decomposes all features layer by layer to select the optimal features for each layer,then fuses the optimal features to form a local optimal group layer by layer and iterates to the global optimal combination finally.Compared with the currentmethod with the best prediction performance in the three data sets,thismethod proposed in this paper can reduce the number of features fromabout ten to about three without losing classification accuracy and even significantly improving classification accuracy.The proposed method has better interpretability and generalization ability,which gives it great potential in the feature selection of radiomics. 展开更多
关键词 Radiomics feature selection machine learning METAHEURISTIC
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Using multi-omics analysis to explore diagnostic tool and optimize drug therapy selection for patients with glioma based on cross-talk gene signature
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作者 YUSHI YANG CHUJIAO HU +3 位作者 SHAN LEI XIN BAO ZHIRUI ZENG WENPENG CAO 《Oncology Research》 SCIE 2024年第12期1921-1934,共14页
Background:The heterogeneity of prognosis and treatment benefits among patients with gliomas is due to tumor microenvironment characteristics.However,biomarkers that reflect microenvironmental characteristics and predic... Background:The heterogeneity of prognosis and treatment benefits among patients with gliomas is due to tumor microenvironment characteristics.However,biomarkers that reflect microenvironmental characteristics and predict the prognosis of gliomas are limited.Therefore,we aimed to develop a model that can effectively predict prognosis,differentiate microenvironment signatures,and optimize drug selection for patients with glioma.Materials and Methods:The CIBERSORT algorithm,bulk sequencing analysis,and single-cell RNA(scRNA)analysis were employed to identify significant cross-talk genes between M2 macrophages and cancer cells in glioma tissues.A predictive model was constructed based on cross-talk gene expression,and its effect on prognosis,recurrence prediction,and microenvironment characteristics was validated in multiple cohorts.The effect of the predictive model on drug selection was evaluated using the OncoPredict algorithm and relevant cellular biology experiments.Results:A high abundance of M2 macrophages in glioma tissues indicates poor prognosis,and cross-talk between macrophages and cancer cells plays a crucial role in shaping the tumor microenvironment.Eight genes involved in the cross-talk between macrophages and cancer cells were identified.Among them,periostin(POSTN),chitinase 3 like 1(CHI3L1),serum amyloid A1(SAA1),and matrix metallopeptidase 9(MMP9)were selected to construct a predictive model.The developed model demonstrated significant efficacy in distinguishing patient prognosis,recurrent cases,and characteristics of high inflammation,hypoxia,and immunosuppression.Furthermore,this model can serve as a valuable tool for guiding the use of trametinib.Conclusions:In summary,this study provides a comprehensive understanding of the interplay between M2 macrophages and cancer cells in glioma;utilizes a cross-talk gene signature to develop a predictive model that can predict the differentiation of patient prognosis,recurrence instances,and microenvironment characteristics;and aids in optimizing the application of trametinib in glioma patients. 展开更多
关键词 GLIOMA CROSS-TALK MACROPHAGES Prognosis Drug therapy selection
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Genomic signatures of selection,local adaptation and production type characterisation of East Adriatic sheep breeds
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作者 Boris Lukic Ino Curik +4 位作者 Ivana Drzaic Vlatko Galić Mario Shihabi LubošVostry Vlatka Cubric-Curik 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2024年第2期546-562,共17页
Background The importance of sheep breeding in the Mediterranean part of the eastern Adriatic has a long tradition since its arrival during the Neolithic migrations.Sheep production system is extensive and generally c... Background The importance of sheep breeding in the Mediterranean part of the eastern Adriatic has a long tradition since its arrival during the Neolithic migrations.Sheep production system is extensive and generally carried out in traditional systems without intensive systematic breeding programmes for high uniform trait production(carcass,wool and milk yield).Therefore,eight indigenous Croatian sheep breeds from eastern Adriatic treated here as metapopulation(EAS),are generally considered as multipurpose breeds(milk,meat and wool),not specialised for a particular type of production,but known for their robustness and resistance to certain environmental conditions.Our objective was to identify genomic regions and genes that exhibit patterns of positive selection signatures,decipher their biological and productive functionality,and provide a"genomic"characterization of EAS adaptation and determine its production type.Results We identified positive selection signatures in EAS using several methods based on reduced local variation,linkage disequilibrium and site frequency spectrum(eROHi,iHS,nSL and CLR).Our analyses identified numerous genomic regions and genes(e.g.,desmosomal cadherin and desmoglein gene families)associated with environmental adaptation and economically important traits.Most candidate genes were related to meat/production and health/immune response traits,while some of the candidate genes discovered were important for domestication and evolutionary processes(e.g.,HOXa gene family and FSIP2).These results were also confirmed by GO and QTL enrichment analysis.Conclusions Our results contribute to a better understanding of the unique adaptive genetic architecture of EAS and define its productive type,ultimately providing a new opportunity for future breeding programmes.At the same time,the numerous genes identified will improve our understanding of ruminant(sheep)robustness and resistance in the harsh and specific Mediterranean environment. 展开更多
关键词 Composite-likelihood ratio East Adriatic sheep Extreme ROH islands Genomic selection signatures Integrated haplotype score Number of segregating sites by length
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Structural failure analysis with CMS-based ground motion selection using innovative cost function and weight factors
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作者 Delbaz Samadian Imrose B.Muhit Nashwan Dawood 《Earthquake Engineering and Engineering Vibration》 SCIE EI CSCD 2024年第4期899-918,共20页
The selection and scaling of ground motion records is considered a primary and essential task in performing structural analysis and design.Conventional methods involve using ground motion models and a conditional spec... The selection and scaling of ground motion records is considered a primary and essential task in performing structural analysis and design.Conventional methods involve using ground motion models and a conditional spectrum to select ground motion records based on the target spectrum.This research demonstrates the influence of adopting different weighted factors for various period ranges during matching selected ground motions with the target hazard spectrum.The event data from the Next Generation Attenuation West 2(NGA-West 2)database is used as the basis for ground motion selection,and hazard de-aggregation is conducted to estimate the event parameters of interest,which are then used to construct the target intensity measure(IM).The target IMs are then used to select ground motion records with different weighted vector-valued objective functions.The weights are altered to account for the relative importance of IM in accordance with the structural analysis application of steel moment resisting frame(SMRF)buildings.Instead of an ordinary objective function for the matching spectrum,a novel model is introduced and compared with the conventional cost function.The results indicate that when applying the new cost function for ground motion selection,it places higher demands on structures compared to the conventional cost function.Moreover,submitting more weights to the first-mode period of structures increases engineering demand parameters.Findings demonstrate that weight factors allocated to different period ranges can successfully account for period elongation and higher mode effects. 展开更多
关键词 weighted objective function ground motion selection steel moment resisting frame hazard analysis
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Assessment of molecular markers and marker-assisted selection for drought tolerance in barley(Hordeum vulgare L.)
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作者 Akmaral Baidyussen Gulmira Khassanova +11 位作者 Maral Utebayev Satyvaldy Jatayev Rystay Kushanova Sholpan Khalbayeva Aigul Amangeldiyeva Raushan Yerzhebayeva KulpashBulatova Carly Schramm Peter Anderson Colin L.D.Jenkins Kathleen LSoole Yuri Shavrukov 《Journal of Integrative Agriculture》 SCIE CSCD 2024年第1期20-38,共19页
This review updates the present status of the field of molecular markers and marker-assisted selection(MAS),using the example of drought tolerance in barley.The accuracy of selected quantitative trait loci(QTLs),candi... This review updates the present status of the field of molecular markers and marker-assisted selection(MAS),using the example of drought tolerance in barley.The accuracy of selected quantitative trait loci(QTLs),candidate genes and suggested markers was assessed in the barley genome cv.Morex.Six common strategies are described for molecular marker development,candidate gene identification and verification,and their possible applications in MAS to improve the grain yield and yield components in barley under drought stress.These strategies are based on the following five principles:(1)Molecular markers are designated as genomic‘tags’,and their‘prediction’is strongly dependent on their distance from a candidate gene on genetic or physical maps;(2)plants react differently under favourable and stressful conditions or depending on their stage of development;(3)each candidate gene must be verified by confirming its expression in the relevant conditions,e.g.,drought;(4)the molecular marker identified must be validated for MAS for tolerance to drought stress and improved grain yield;and(5)the small number of molecular markers realized for MAS in breeding,from among the many studies targeting candidate genes,can be explained by the complex nature of drought stress,and multiple stress-responsive genes in each barley genotype that are expressed differentially depending on many other factors. 展开更多
关键词 BARLEY candidate genes drought tolerance gene verification via expression grain yield marker-assisted selection(MAS) molecular markers quantitative trait loci(QTLs) strategy for MAS
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The environmental analysis and site selection of mussel and large yellow croaker aquaculture areas based on high resolution remote sensing
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作者 Lina Cai Jie Yin +3 位作者 Xiaojun Yan Yongdong Zhou Rong Tang Menghan Yu 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2024年第3期66-86,共21页
Mussel aquaculture and large yellow croaker aquaculture areas and their environmental characteristics in Zhoushan were analyzed using satellite data and in-situ surveys.A new two-step remote sensing method was propose... Mussel aquaculture and large yellow croaker aquaculture areas and their environmental characteristics in Zhoushan were analyzed using satellite data and in-situ surveys.A new two-step remote sensing method was proposed and applied to determine the basic environmental characteristics of the best mussel and large yellow croaker aquaculture areas.This methodology includes the first step of extraction of the location distribution and the second step of the extraction of internal environmental factors.The fishery ranching index(FRI1,FRI2)was established to extract the mussel and the large yellow croaker aquaculture area in Zhoushan,using Gaofen-1(GF-1)and Gaofen-6(GF-6)satellite data with a special resolution of 2 m.In the second step,the environmental factors such as sea surface temperature(SST),chlorophyll a(Chl-a)concentration,current and tide,suspended sediment concentration(SSC)in mussel aquaculture area and large yellow croaker aquaculture area were extracted and analyzed in detail.The results show the following three points.(1)For the extraction of the mussel aquaculture area,FRI1 and FRI2 are complementary,and the combination of FRI1 and FRI2 is suitable to extract the mussel aquaculture area.As for the large yellow croaker aquaculture area extraction,FRI2 is suitable.(2)Mussel aquaculture and the large yellow croaker aquaculture area in Zhoushan are mainly located on the side near the islands that are away from the eastern open waters.The water environment factor template suitable for mussel and large yellow croaker aquaculture was determined.(3)This two-step remote sensing method can be used for the preliminary screening of potential site selection for the mussels and large yellow croaker aquaculture area in the future.the fishery ranching index(FRI1,FRI2)in this paper can be applied to extract the mussel and large yellow croaker aquaculture areas in coastal waters around the world. 展开更多
关键词 mussel aquaculture area large yellow croaker aquaculture area high resolution satellite site selection environmental analysis
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MAIPFE:An Efficient Multimodal Approach Integrating Pre-Emptive Analysis,Personalized Feature Selection,and Explainable AI
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作者 Moshe Dayan Sirapangi S.Gopikrishnan 《Computers, Materials & Continua》 SCIE EI 2024年第5期2229-2251,共23页
Medical Internet of Things(IoT)devices are becoming more and more common in healthcare.This has created a huge need for advanced predictive health modeling strategies that can make good use of the growing amount of mu... Medical Internet of Things(IoT)devices are becoming more and more common in healthcare.This has created a huge need for advanced predictive health modeling strategies that can make good use of the growing amount of multimodal data to find potential health risks early and help individuals in a personalized way.Existing methods,while useful,have limitations in predictive accuracy,delay,personalization,and user interpretability,requiring a more comprehensive and efficient approach to harness modern medical IoT devices.MAIPFE is a multimodal approach integrating pre-emptive analysis,personalized feature selection,and explainable AI for real-time health monitoring and disease detection.By using AI for early disease detection,personalized health recommendations,and transparency,healthcare will be transformed.The Multimodal Approach Integrating Pre-emptive Analysis,Personalized Feature Selection,and Explainable AI(MAIPFE)framework,which combines Firefly Optimizer,Recurrent Neural Network(RNN),Fuzzy C Means(FCM),and Explainable AI,improves disease detection precision over existing methods.Comprehensive metrics show the model’s superiority in real-time health analysis.The proposed framework outperformed existing models by 8.3%in disease detection classification precision,8.5%in accuracy,5.5%in recall,2.9%in specificity,4.5%in AUC(Area Under the Curve),and 4.9%in delay reduction.Disease prediction precision increased by 4.5%,accuracy by 3.9%,recall by 2.5%,specificity by 3.5%,AUC by 1.9%,and delay levels decreased by 9.4%.MAIPFE can revolutionize healthcare with preemptive analysis,personalized health insights,and actionable recommendations.The research shows that this innovative approach improves patient outcomes and healthcare efficiency in the real world. 展开更多
关键词 Predictive health modeling Medical Internet of Things explainable artificial intelligence personalized feature selection preemptive analysis
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A Self-Adapting and Efficient Dandelion Algorithm and Its Application to Feature Selection for Credit Card Fraud Detection
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作者 Honghao Zhu MengChu Zhou +1 位作者 Yu Xie Aiiad Albeshri 《IEEE/CAA Journal of Automatica Sinica》 SCIE EI CSCD 2024年第2期377-390,共14页
A dandelion algorithm(DA) is a recently developed intelligent optimization algorithm for function optimization problems. Many of its parameters need to be set by experience in DA,which might not be appropriate for all... A dandelion algorithm(DA) is a recently developed intelligent optimization algorithm for function optimization problems. Many of its parameters need to be set by experience in DA,which might not be appropriate for all optimization problems. A self-adapting and efficient dandelion algorithm is proposed in this work to lower the number of DA's parameters and simplify DA's structure. Only the normal sowing operator is retained;while the other operators are discarded. An adaptive seeding radius strategy is designed for the core dandelion. The results show that the proposed algorithm achieves better performance on the standard test functions with less time consumption than its competitive peers. In addition, the proposed algorithm is applied to feature selection for credit card fraud detection(CCFD), and the results indicate that it can obtain higher classification and detection performance than the-state-of-the-art methods. 展开更多
关键词 Credit card fraud detection(CCFD) dandelion algorithm(DA) feature selection normal sowing operator
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Population genomic analysis reveals key genetic variations and the driving force for embryonic callus induction capability in maize
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作者 Peng Liu Langlang Ma +8 位作者 Siyi Jian Yao He Guangsheng Yuan Fei Ge Zhong Chen Chaoying Zou Guangtang Pan Thomas Lübberstedt Yaou Shen 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2024年第7期2178-2195,共18页
Genetic transformation has been an effective technology for improving the agronomic traits of maize.However,it is highly reliant on the use of embryonic callus(EC)and shows a serious genotype dependence.In this study,... Genetic transformation has been an effective technology for improving the agronomic traits of maize.However,it is highly reliant on the use of embryonic callus(EC)and shows a serious genotype dependence.In this study,we performed genomic sequencing for 80 core maize germplasms and constructed a high-density genomic variation map using our newly developed pipeline(MQ2Gpipe).Based on the induction rate of EC(REC),these inbred lines were categorized into three subpopulations.The low-REC germplasms displayed more abundant genetic diversity than the high-REC germplasms.By integrating a genome-wide selective signature screen and region-based association analysis,we revealed 95.23 Mb of selective regions and 43 REC-associated variants.These variants had phenotypic variance explained values ranging between 21.46 and 49.46%.In total,103 candidate genes were identified within the linkage disequilibrium regions of these REC-associated loci.These genes mainly participate in regulation of the cell cycle,regulation of cytokinesis,and other functions,among which MYB15 and EMB2745 were located within the previously reported QTL for EC induction.Numerous leaf area-associated variants with large effects were closely linked to several REC-related loci,implying a potential synergistic selection of REC and leaf size during modern maize breeding. 展开更多
关键词 MAIZE genetic transformation embryonic callus selective signal association analysis
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Video-Based Deception Detection with Non-Contact Heart Rate Monitoring and Multi-Modal Feature Selection
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作者 Yanfeng Li Jincheng Bian +1 位作者 Yiqun Gao Rencheng Song 《Journal of Beijing Institute of Technology》 EI CAS 2024年第3期175-185,共11页
Deception detection plays a crucial role in criminal investigation.Videos contain a wealth of information regarding apparent and physiological changes in individuals,and thus can serve as an effective means of decepti... Deception detection plays a crucial role in criminal investigation.Videos contain a wealth of information regarding apparent and physiological changes in individuals,and thus can serve as an effective means of deception detection.In this paper,we investigate video-based deception detection considering both apparent visual features such as eye gaze,head pose and facial action unit(AU),and non-contact heart rate detected by remote photoplethysmography(rPPG)technique.Multiple wrapper-based feature selection methods combined with the K-nearest neighbor(KNN)and support vector machine(SVM)classifiers are employed to screen the most effective features for deception detection.We evaluate the performance of the proposed method on both a self-collected physiological-assisted visual deception detection(PV3D)dataset and a public bag-oflies(BOL)dataset.Experimental results demonstrate that the SVM classifier with symbiotic organisms search(SOS)feature selection yields the best overall performance,with an area under the curve(AUC)of 83.27%and accuracy(ACC)of 83.33%for PV3D,and an AUC of 71.18%and ACC of 70.33%for BOL.This demonstrates the stability and effectiveness of the proposed method in video-based deception detection tasks. 展开更多
关键词 deception detection apparent visual features remote photoplethysmography non-contact heart rate feature selection
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A preliminary site selection system for underground hydrogen storage in salt caverns and its application in Pingdingshan,China
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作者 Liangchao Huang Yanli Fang +6 位作者 Zhengmeng Hou Yachen Xie Lin Wu Jiashun Luo Qichen Wang Yilin Guo Wei Sun 《Deep Underground Science and Engineering》 2024年第1期117-128,共12页
Large‐scale underground hydrogen storage(UHS)provides a promising method for increasing the role of hydrogen in the process of carbon neutrality and energy transition.Of all the existing storage deposits,salt caverns... Large‐scale underground hydrogen storage(UHS)provides a promising method for increasing the role of hydrogen in the process of carbon neutrality and energy transition.Of all the existing storage deposits,salt caverns are recognized as ideal sites for pure hydrogen storage.Evaluation and optimization of site selection for hydrogen storage facilities in salt caverns have become significant issues.In this article,the software CiteSpace is used to analyze and filter hot topics in published research.Based on a detailed classification and analysis,a“four‐factor”model for the site selection of salt cavern hydrogen storage is proposed,encompassing the dynamic demands of hydrogen energy,geological,hydrological,and ground factors of salt mines.Subsequently,20 basic indicators for comprehensive suitability grading of the target site were screened using the analytic hierarchy process and expert survey methods were adopted,which provided a preliminary site selection system for salt cavern hydrogen storage.Ultimately,the developed system was applied for the evaluation of salt cavern hydrogen storage sites in the salt mines of Pingdingshan City,Henan Province,thereby confirming its rationality and effectiveness.This research provides a feasible method and theoretical basis for the site selection of UHS in salt caverns in China. 展开更多
关键词 analytic hierarchy process(AHP) evaluation index hydrogen storage salt cavern site selection
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