Effects of Phytoremediation on Soil Contaminated with Pb and Cd in Tolerant Bacterial Populations

Bacterial populations isolated from treated soil,artificially contaminated with lead(Pb)and cadmium(Cd)and undergoing a phytoremediation process were studied to determine their potential application in soil remediation.The physicochemical parameters evaluated in the soil varied significantly.Ten bacterial strains were selected from each polluted soil to test tolerance and growth in contaminated media.The concentrations of heavy metals tested were 1,000 ppm for lead and 850 ppm for cadmium.These strains were morphologically identified through Gram staining.Four strains showing the most significant growth in both contaminants were then selected to verify their tolerance to different concentrations of heavy metals.The results demonstrated that the selected bacteria have high tolerance to Pb,resisting inhibition up to 2,000 ppm.In contrast,strains exposed to cadmium tended to slow their growth as the concentration increased.

Integrated Effects of Phosphate Rock and Chemical Fertilizers on the Dynamics of Soil Bacterial in Acidic Rice Paddy Soils of Man (Ivory Coast)

In agricultural soils, phosphorus is often limited, leading farmers to employ artificial supplementation through both inorganic and organic fertilization methods due to its restricted availability. Soil fertilization has the potential to augment both the abundance and diversity of bacterial communities. Our study aimed to assess the effects of phosphate amendments, derived from natural phosphate rock, and chemical fertilizers (TSP, NPK), on the density and diversity of bacterial communities within the study plots. We developed and applied eight phosphate amendments during the initial cultivation cycle. Soil samples were collected post 1st and 2nd cultivation cycles, and the quantification of both total and cultivable phosphate-solubilizing bacteria (PSB) was conducted. Additionally, we analyzed bacterial community structure, α-diversity (Shannon Diversity Index, Evenness Index, Chao1 Index). The combination of natural phosphate rock (PR) and chemical fertilizers (TSP, NPK) significantly increased (p 7 bacteria/g dry soil) and phosphate-solubilizing bacteria (0.01 to 6.8 × 107 PSB/g dry soil) in comparison to unamended control soils. The diversity of bacterial phyla (Firmicutes, Actinobacteria, Proteobacteria, Halobacterota, Chloroflexia) observed under each treatment remained consistent regardless of the nature of the phosphate amendment applied. However, changes in the abundance of the bacterial phyla populations were observed as a function of the nature of the phosphate amendment or chemical fertilizer. It appears that the addition of excessive natural phosphate rock does not alter the number and the diversity of soil microorganisms population despite successive cultivation cycles. However, the addition of excessive chemical fertilizer reduces soil microorganisms density and structure after the 2nd cultivation cycle.

Effects of Biochar Inoculation with Bacillus megaterium on Rice Soil Phosphorus Fraction Transformation and Bacterial Community Dynamics

Rice husk biochar inoculated with Bacillus megaterium(BM)(referred to as BM-inoculated biochar, BMB) and uninoculated rice husk biochar(RHB) were added to soil at two rates(0.5%, as BMB1 and RHB1, respectively, and 1.0%, as BMB2 and RHB2, respectively) in an incubation experiment to comprehensively evaluate their effects on basic soil properties, phosphorus(P) fractions, bacterial community composition, and P-cycling genes.

Soybean(Glycine max)rhizosphere organic phosphorus recycling relies on acid phosphatase activity and specific phosphorusmineralizing-related bacteria in phosphate deficient acidic soils

Bacteria play critical roles in regulating soil phosphorus(P) cycling. The effects of interactions between crops and soil P-availability on bacterial communities and the feedback regulation of soil P cycling by the bacterial community modifications are poorly understood. Here, six soybean(Glycine max) genotypes with differences in P efficiency were cultivated in acidic soils with long-term sufficient or deficient P-fertilizer treatments. The acid phosphatase(AcP) activities, organic-P concentrations and associated bacterial community compositions were determined in bulk and rhizosphere soils. The results showed that both soybean plant P content and the soil AcP activity were negatively correlated with soil organic-P concentration in P-deficient acidic soils. Soil P-availability affected the ɑ-diversity of bacteria in both bulk and rhizosphere soils. However, soybean had a stronger effect on the bacterial community composition, as reflected by the similar biomarker bacteria in the rhizosphere soils in both P-treatments. The relative abundance of biomarker bacteria Proteobacteria was strongly correlated with soil organic-P concentration and AcP activity in low-P treatments. Further high-throughput sequencing of the phoC gene revealed an obvious shift in Proteobacteria groups between bulk soils and rhizosphere soils, which was emphasized by the higher relative abundances of Cupriavidus and Klebsiella, and lower relative abundance of Xanthomonas in rhizosphere soils. Among them, Cupriavidus was the dominant phoC bacterial genus, and it was negatively correlated with the soil organic-P concentration. These findings suggest that soybean growth relies on organic-P mineralization in P-deficient acidic soils, which might be partially achieved by recruiting specific phoCharboring bacteria, such as Cupriavidus.

Influence of functionalized graphene on the bacterial and fungal diversity of Vicia faba rhizosphere soil

The effect of functionalized graphene on the growth and development of Vicia faba L.was investigated by analyzing its impact on the composition and diversity of the microbial community in rhizosphere peat soil.Seedlings of V.faba planted in this peat soil were treated with either distilled water(CK)or 25 mg·L^(−1)(G25)of functionalized graphene solution.Results showed that the height and root length of V.faba seedlings in the G25 group were significantly larger than those in CK group.The microbial com-munity was analyzed by amplifying and sequencing the 16S rRNA gene V_(3)-V_(4) region of bacteria and internal transcribed spacer re-gion of fungi in rhizosphere soil using Illumina MiSeq technology.Alpha and beta diversity analysis indicated that functionalized graphene increased the richness and diversity of bacteria and fungi in the V.faba rhizosphere peat soil.The abundances of three ni-trogen cycling-related bacteria,Hydrogenophaga,Sphingomonas and Nitrosomonadaceae,were also altered after treatment with the functionalized graphene.The relative abundance of Basilicum,related to soil phosphorus solubilization,decreased in the fungal com-munity,while the relative abundance of Clonostachys and Dimorphospora,which exhibited strong biological control over numerous fungal plant pathogens,nematodes and insects,increased in the soil after functionalized graphene treatment.Redundancy analysis re-vealed that the potential of hydrogen(pH),organic matter,and total phosphorus contributed the most to the changes in bacterial and fungal community composition in the rhizosphere soil.Overall,our findings suggested that the addition of functionalized graphene altered the relative abundances of nitrogen and phosphorus cycling-related microorganisms in peat soil,promoting changes in the physicochemical properties of the soil and ultimately leading to the improved growth of V.faba plants.

Isolation and Identification of Potassium Releasing Bacteria from Sugarcane Rhizosphere Soil and Optimization of Fermentation Condition

[Objectives]To isolate and optimize the potassium releasing bacteria from sugarcane rhizosphere soil in Baitu Town,Gaoyao District,Zhaoqing City,Guangdong Province,and then evaluate their potassium-releasing ability,and optimize the fermentation conditions of the strains with the best potassium-releasing ability,so as to provide a scientific basis for the development and production of potassium releasing bacteria fertilizer.[Methods]Potassium-solubilizing bacteria were isolated from sugarcane rhizosphere soil using potassium-feldspar powder as the potassium source of isolation medium by dilution coating method and plate streaking method.The isolated strains were identified by 16s rRNA sequence analysis.The potassium-releasing ability of each strain was determined by sodium tetraphenylborate(STPB)method,and the strain GK-37 with the optimal potassium-releasing ability was selected.The fermentation conditions of GK-37 strain were further optimized,and the effects of different carbon sources on its growth were mainly investigated.[Results]Seven strains of potassium-solubilizing bacteria were isolated and purified,and identified by 16s rRNA.They belonged to Pseudomonas knackmussii,Pseudomonas,Pseudomonas insulaes and Caballeronia zhejiangensis.Among the tested strains,strain GK-37 had the best potassium-releasing ability,and its potassium-releasing capacity was 26.99 mg/L.By optimizing the fermentation conditions of GK-37 strain,it was found that when the fermentation medium was sucrose as carbon source,the growth of the strain was the best.[Conclusions]In this study,the potassium releasing bacteria were successfully isolated and identified from the rhizosphere soil of sugarcane,and the strain GK-37 had high potassium-releasing ability.Through the optimization of fermentation conditions of GK-37 strain,sucrose was determined as the optimal carbon source.This study is expected to provide a valuable reference for the further development and production of potassium releasing bacteria fertilizer.

Screening of Soil Antagonistic Bacteria for Watermelon Fusarium Wilt

[Objective] The aim of this study was to screen bacteria strains with stable antagonistic effect against watermelon fusarium wilt from soil and investigate the biological control of watermelon fusarium wilt by applying the antagonistic bacteria strains into soil.[Method] Actinomycete strains,fluorescent bacteria strains and bacillus strains were isolated from soil samples by the dilution-plate method,then its resistance was screened respectively by the improved confront culture method after colonies were purified.Finally,bacteria strains with better antagonistic effect were identified.[Result] 29 bacteria strains with stable antagonistic effect against watermelon fusarium wilt were screened from 39 soil samples,which contained 15 fluorescent bacteria strains,5 bacillus strains and 9 actinomycete strains.Furthermore,three antagonistic bacteria strains of FM2,FM3 and FM4 with the strongest antagonism were identified primarily.[Conclusion] According to cultural characteristics,morphological observation,biochemical and physiological tests,FM2 belongs to bacillus subtilis,while FM3 and FM4 belong to micrococcus.

Feasibility of enhanced phytoextraction of Zn contaminated soil with Zn mobilizing and plant growth promoting endophytic bacteria

Three bacterial endophytes of Sedum alfredii, VI8L2, II8L4 and VI8R2, were examined for promoting soil Zn bioavailability and Zn accumulation in S. alfredii. Results showed that three strains were re-introduced into S. alfredii rhizosphere soils under Zn stress and resulted in better plant growth, as roots biomass increased from 80% to 525% and shoot biomass from 11% to 47% compared with the uninoculated ones. Strains IVsLz, II8L4 and IVsR2 significantly increased shoot and root Zn concentrations in the ZnCO3 contaminated soil. Inoculation with strain IVsL2 resulted in 44% and 39% higher shoot and root Zn concentrations, while strain IV8R2 significantly decreased shoot Zn concentration in the Zn3（PO4）2 contaminated soils. In the aged contaminated soil, isolates IVsL2, IIsL4 and IVsR2 significantly increased root Zn concentration, but decreased shoot Zn concentration of Sedum alfredii. It suggested that endophytes might be used for enhancing phytoextraction efficiency.

Amelioration of Salt Stress on Wheat Plants Growth in Coastal Saline Soil by a Phosphate Solubilizing Bacterium Enterobacteria sp. EnHy-401

A pot experiment was conducted to examine the effects of a phosphate solubilizing bacterium（PSB）,Enterobacteria sp.EnHy-401,on the availability of insoluble accumulative phosphorus（P）and growth of wheat（Triticum Ningmai No.13）plants in sterile saline soil.Our results showed that the strain EnHy-401 had the ability to activate the insoluble accumulated phosphorus in saline soil and enhanced nutrient uptake efficiency by wheat plants,then conferred resistance in wheat plants to salt stress and resulted in a significant growth increase.In saline soil inoculated with Enterobacteria sp.EnHy-401,available phosphorus and exchangeable calcium was increased from 6.4 mg/kg and 1 162 mg/kg to 10.3 mg/kg and 1 214 mg/kg,respectively.Wheat seedling grown in soil inoculated with the EnHy-401 strain increased shoot weight by 28.1% and root weight by 14.6% when compared to the control.P,Ca,K and Mg contents in shoots increased 34.4%,36.3%,31.5%,and 6.3% compared to the control,respectively.the fact that the increases in available P,biomass P,and Ca2＋ concentration in saline soil treated with PSB Enterobacter sp.EnHy-401 inocula,and high relativity between the P,Ca,K,and Mg content in wheat tissue and dry matter indicated that PSB Enterobacter sp.EnHy-401 suppressed the adverse effect of salinity stress in plants through nutrient（P and Ca）supply and nutrient（K and Mg）uptake enhancement.The phosphate solubilizing activity of Enterobacteria sp.EnHy-401 and the amelioration of salt stress on wheat plants by the strain varied with the salinity levels and content of organic matter in the saline soil.

Screening and Identification of Antagonistic Bacteria against Soil-borne Diseases of Tomato

[Objective] This study was conducted to screen resources for biological control of soil-borne diseases of tomato. [Method] Antagonistic bacteria against Ral- stonia solanacearum and Fusarium oxysporum were isolated and purified from soil samples by dilution plating and confronting incubation on PDA plates, then the antibacterial spectrum and metabolic secretions of the bacterial isolates were measured, and their species were identified by establishing phylogenetic trees with Neighbor-Joining method. [Result] From the 60 soil samples, 10 of 59 antagonistic bacteria isolates against R. solanacearum showed inhibition zone diameter 〉 25 mm, and 4 of 30 strains against F. oxysporum exhibited inhibition rate 〉 30%. The bacteriostatic substances and antibacterial spectrum analysis on above 14 isolates revealed that four strains N23-2, N58-2, NF59-3 and NF61-1 had good antago- nism against pathogenic bacteria and fungi; 12 strains produced cellulose, 11 strains produced proteases, and 6 strains produced siderophores. The molecular identification experiments indicated that four strains were members of Paenibacillus, three strains of Streptomyces, three strains of Pseudomonas strains, and four strains of Bacillus strains.

Isolation and Identification of Soil Actinobacteria from Mangrove forest in Beihai,Guangxi Province

[Objective] The aim was to identify the species diversity of Actinomycetes from Mangrove forest in Beihai,Guangxi Province. [Method] 10 strains of typical Actinomycetes were isolated from Mangrove forest soil,and the Actinomycetes genomic DNA was successful extracted. 16S rDNA was amplified by PCR and sequenced by Sanger dideoxy sequencing method. [Result] All the sequences were blasted in genbank,eight strains belonged to the genus of Streptomyces (80%),and two strains belonged to the genus of Nocardiopsis (20%). [Conclusion] There are many different Actinomycetes species in Mangrove forest soil samples in Beihai,Guangxi Province.

Effects of Transgenic DREB Soybean Dongnong 50 on the Diversity of Soil Ammonia-oxidizing Bacteria

ObjectiveThe aim was to understand the effects of transgenic DREB soybean on the ammonia-oxidizing bacteria. MethodThe diversity of the cto gene in pot-planted transgenic soybean and near-isogenic non-transgenic soybean under normal water condition and drought stress was analyzed by PCR-DGGE and sequence analysis. ResultRhizosphere community diversity of ammonia-oxidizing bacteria showed no difference between the treatments of transgenic soybean and its non-transgenic isolines, moreover transgenic soybean under normal water condition and drought stress improved the diversity of the ammonia-oxidizing bacteria in the harvest time. The phylogenetic analysis revealed that all the sequences of excised DGGE bands were closely related to members of the genus Nitrosovibrio and Nitrosospira of the β-subclass Proteobacteria. ConclusionTransgenic DREB soybean has no adverse impact on soil ammonia-oxidizing bacteria.

Bacterial Community Structure and Diversity in a Black Soil as Affected by Long-Term Fertilization

Black soil （Mollisol） is one of the main soil types in northeastern China. Biolog and polymerase chain reactiondenaturing gradient gel electrophoresis （PCR-DGGE） methods were used to examine the influence of various fertilizer combinations on the structure and function of the bacterial community in a black soil collected from Harbin, Heilongjiang Province. Biolog results showed that substrate richness and catabolic diversity of the soil bacterial community were the greatest in the chemical fertilizer and chemical fertilizer＋manure treatments. The metabolic ability of the bacterial community in the manure treatment was similar to the control. DGGE fingerprinting indicated similarity in the distribution of most 16S rDNA bands among all treatments, suggesting that microorganisms with those bands were stable and not influenced by fertilization. However, chemical fertilizer increased the diversity of soil bacterial community. Principal com- ponent analysis of Biolog and DGGE data revealed that the structure and function of the bacterial community were similar in the control and manure treatments, suggesting that the application of manure increased the soil microbial population, but had no effect on the bacterial community structure. Catabolic function was similar in the chemical fertilizer and chemical fertilizer＋manure treatments, but the composition structure of the soil microbes differed between them. The use of chemical fertilizers could result in a decline in the catabolic activity of fast-growing or eutrophic bacteria.

Aromatic compound degradation by iron reducing bacteria isolated from irrigated tropical paddy soils

Forty-six candidate phenol/benzoate degrading-iron reducing bacteria were isolated from long term irrigated tropical paddy soils by enrichment procedures.Pure cultures and some prepared mixed cultures were examined for ferric oxide reduction and phenol/benzoate degradation.All the isolates were iron reducers,but only 56.5%could couple iron reduction to phenol and/or benzoate degradation,as evidenced by depletion of phenol and benzoate after one week incubation.Analysis of degradative capability using Biolog...

Microbial diversity of soil bacteria in agricultural field contaminated with heavy metals

In this study we evaluated the bacterial diversity in a soil sample from a site next to a chemical industrial factory previously contaminated with heavy metals. Analysis of 16S rDNA sequences amplified from DNA directly extracted from the soil revealed 17 different bacterial types （genera and/or species）. They included Polyangium spp., Sphingomonas spp., Variovorax spp., Hafina spp., Clostridia, Acidobacteria, the enterics and some uncultured strains. Microbes able to tolerate high concentrations of cadmium （500μmol/L and above） were also isolated from the soil. These isolates included strains of Acinetobacter （strain CD06）, Enterobacter sp. （strains CD01, CD03, CD04 and CD08） （similar strains also identified in culture-independent approach） and a strain of Stenotrophomonas sp. The results indicated that the species identified from direct analysis of 16S rDNA of the soil can be quite different from those strains obtained from enrichment cultures and the microbial activities for heavy metal resistance might be more appropriately addressed by the actual isolates.

Clear felling and burning effects on soil nitrogen transforming bacteria and actinomycetes population in Chittagong University campus, Bangladesh

The effect of forests clear felling and associated burning on the population of soil nitrogen transforming bacteria and actinomycetes are reported at three pair sites of Chittagong University campus, Bangla- desh in monsoon tropical climate. Clear felled area or burnt site and 15-21 year mixed plantation of native and exotic species, situated side by side on low hill having Typic Dystrochrepts soil was represented at each pair site. At all the three pair sites, clear felled area or burnt site showed very significantly （p~_0.001） lower population of actinomycetes, Rhizobium, Nitrosomonas, Nitrobacter and ammonifying as well as deni- trifying bacteria compared to their adjacent mixed plantation. From en- vironmental consideration, this finding has implication in managing natural ecosystem.

Effects of maize-soybean relay intercropping on crop nutrient uptake and soil bacterial community

Maize-soybean relay intercropping is an effective approach to improve the crop yield and nutrient use efficiency,which is widely practiced by farmers in southwest of China.To elucidate the characteristics of different planting patterns on crop nutrient uptake,soil chemical properties,and soil bacteria community in maize-soybean relay intercropping systems,we conducted a field experiment in 2015–2016 with single factor treatments,including monoculture maize(MM),monoculture soybean(MS),maize-soybean relay intercropping(IMS),and fallow(CK).The results showed that the N uptake of maize grain increased in IMS compared with MM.Compared with MS,the yield and uptake of N,P,and K of soybean grain were increased by 25.5,24.4,9.6,and 22.4%in IMS,respectively,while the N and K uptakes in soybean straw were decreased in IMS.The soil total nitrogen,available phosphorus,and soil organic matter contents were significantly higher in IMS than those of the corresponding monocultures and CK.Moreover,the soil protease,soil urease,and soil nitrate reductase activities in IMS were higher than those of the corresponding monocultures and CK.The phyla Proteobacteria,Acidobacteria,Chloroflexi,and Actinobacteria dominated in all treatments.Shannon’s index in IMS was higher than that of the corresponding monocultures and CK.The phylum Proteobacteria proportion was positively correlated with maize soil organic matter and soybean soil total nitrogen content,respectively.These results indicated that the belowground interactions increased the crop nutrient(N and P)uptake and soil bacterial community diversity,both of which contributed to improved soil nutrient management for legume-cereal relay intercropping systems.

Species of Inorganic Phosphate Solubilizing Bacteria in Red Soil and the Mechanism of Solubilization

INTRODUCTION The insoluble phosphates which can not be directly absorbed by plants are the mai forms of inorganic phosphate in soil. These kinds of phosphates can be solubilized by several species of bacteria which are widely spread in soil especially in rhizosphere where70% of the bacteria are capable of solubilizing inorganic phosphate. Many researchers re-

Effect of RRS on nitrogen transition and related bacteria in rhizosphere soil

The biology safety of genetically modified organisms （GMO） has been a topic of considerable public debate in recent years. Parts of the international research on the safety of GMO focus on its effect on soil ecosystem, especially on microbial communities changing and process in soil that are essential to key terrestrial ecosystem functions. This paper studied the dynamic change of soil microbe after cultivating Roundup Ready soybean （RRS） and the effect on biochemical processing of nitrogen cycle. According to the variance analysis, the ammonifying bacteria and nitrifying bacteria quantities of RRS in the rhizosphere soil were much lower than that of other genotype soybeans. The effects of different genotype soybeans on ammoniation intensity and nitrification intensity were remarkable. The nitrification intensity and the nitrifying bacteria had the great positive correlation and sustainable development.

Effects of Cinnamic Acid on Bacterial Community Diversity in Rhizosphere Soil of Cucumber Seedlings Under Salt Stress

To investigate the effects of a plant autotoxin, cinnamic acid, on bacterial communities in the rhizosphere soil of cucumber seedlings under salt stress, we used cucumber as the experimental material, cinnamic acid as the autotoxin, and NaCl to apply salt stress. Bacterial communities in the rhizosphere soil were analyzed using polymerase chain reaction （PCR）, denaturing gradient gel electrophoresis （DGGE）, and clone sequencing. Salt stress decreased the diversity of bacterial species in rhizosphere soil of cucumber seedlings at several growth stages. Cinnamic acid exacerbated the effects of salt stress at high concentrations, but alleviated its effects at low concentrations. Cloning and sequencing results indicated that DGGE bands amplified from soil samples showed high homology to uncultured bacterial species. Cinnamic acid at 50 mg kg^-1 soil improved cucumber growth and was the most effective treatment to alleviate the effects of salt stress on bacterial communities.