基于Super-GBS简化基因组测序技术的柞蚕SNP位点挖掘

基于Super-GBS基因分型(super-genotyping-by-sequencing)技术开展柞蚕单核苷酸多态性标记(single nucleotide polymorphism,SNP)位点挖掘研究,旨在开发性状关联SNP分子标记,为柞蚕种质资源评价鉴定、遗传图谱构建、QTL定位提供数据支撑。以白体色小白蚕为母本、黄体色H04为父本,获得BC1M群体(110个)、F_(1)(3个)、P_(1)(1个)、P_(2)(1个)总计115个柞蚕材料,利用PstⅠ-HF/MspⅠ双酶切基因组构建Super-GBS文库并测序,使用BWA软件将过滤后的序列数据比对到柞蚕参考基因组,采用GATK软件开发SNP标记,使用SnpEff软件注释SNP位点及R语言分析遗传结构。测序共产生序列数据量为106.39 Gb,过滤后的平均读长为0.89 Gb,Q30测序质量值平均为90.11%,比对率平均为98.48%。共得到有效SNP位点141100个,主要位于基因间隔区、内含子区、基因下游、上游,其中C/T、A/G变异类型最多,转换与颠换的比例为1.296187∶1。SNP位点变异主要为同义突变和错义突变,产生修饰(MODIFIER)影响。主成分与聚类分析将115个样品分为4组(P_(1)、P_(2)、F_(1)、BC_(1)M),反映了样品的遗传背景及亲缘关系,群体遗传分化指数F_(ST)在0.0003777~0.8272间,群体遗传距离DR分布在0.0004~1.7556,F_(ST)与DR均表现出明显的遗传背景上的聚类。结果表明,Super-GBS技术能够获得大量柞蚕SNP位点信息,可用于SNP标记开发,且开发的SNP标记能够对115个样品的亲缘关系、体色演变进行解释,为今后柞蚕种质资源评价与鉴定、分子标记辅助育种工作奠定基础。

基于简化基因组测序(Super-GBS)的子午岭黑山羊保种群遗传结构评估

旨在分析子午岭黑山羊的群体遗传多样性和亲缘关系以及家系结构,为子午岭黑山羊的保护和利用提供依据。本研究通过简化基因组测序(super-genotyping by sequencing,Super-GBS)技术对99只(10公/89母)成年子午岭黑山羊进行全基因组SNP检测。利用Plink软件计算观测杂合度(Ho)、期望杂合度(He)、多态信息含量(PIC)、核苷酸多样性(Pi)、有效等位基因数(Ne)及次要等位基因频率(MAF)等6项遗传多样性指标;GCTA软件进行主成分分析及基因组亲缘关系G矩阵构建;Plink软件构建IBS遗传距离矩阵,R语言绘制热图;PHYLP构建系统发育树;detect RUNS工具检测ROH。结果表明,99只子午岭黑山羊个体共检测到996042个SNPs。子午岭黑山羊群体的PIC、Pi、Ne及MAF值分别是0.161、0.193、1.295、0.130,且Ho(0.167)低于He(0.192),说明子午岭黑山羊群体遗传多样性较低。G矩阵和IBS遗传距离结果均表明子午岭黑山羊群体间大部分个体间亲缘关系较远。主成分分析结果揭示子午岭黑山羊群体内部不存在明显分化,系统发育树结果说明子午岭黑山羊群体公羊可大致分为6个家系,所有家系公羊数量较少。子午岭黑山羊群体的近交系数FROH为0.0496,说明子午岭黑山羊群体内部近交程度相对较低。综上所述,子午岭黑山羊群体遗传多样性较低,大部分个体间亲缘关系较远,群体内近交程度较低,后期应注意后代的选育,避免血统流失。

SUPER-ELASTIC CONSTITUTIVE MODEL CONSIDERING PLASTICITY AND ITS FINITE ELEMENT IMPLEMENTATION

Based on the experimental results of super-elastic NiTi alloy, a three-dimensional super-elastic constitutive model including both of stress-induced martensite transformation and plasticity is constructed in a framework of general inelasticity. In the proposed model, transformation hardening, reverse transformation of stress-induced martensite, elastic mismatch between the austenite and martensite phases, and temperature-dependence of transformation stress and elastic modulus of each phase are considered. The plastic yielding of martensite occurred under high stress is addressed by a bilinear isotropic hardening rule. Drucker-Prager-typed transformation surfaces are employed to describe the asymmetric behavior of NiTi alloy in tension and compression. The prediction capability of the proposed model is verified by comparing the simulated results with the correspondent experimental ones. Based on backward Euler＇s integration, a new expression of consistent tangent modulus is derived. The proposed model is then implemented into a finite element package ABAQUS by user-subroutine UMAT. Finally, the validity of such implementation was verified by some numerical samples.

Modeling and analysis of nonlinear mechanics of a super-thin elastic rod

Nonlinear mechanics for a super-thin elastic rod with the biological background of DNA super-coiling macromolecules is an interdisciplinary research area of classical mechanics and molecular biology. It is also a subject of dynamics and elasticity because elastic bodies are analyzed via the theory of dynamics. It is in frontiers of general mechanics （dynamics and control）. This dissertation is devoted to model a constrained super-thin elastic rod and analyze its stability in equilibrium. The existing research results are summarized. Analytical mechanics is systematically applied to model the elastic rod. The Schroedinger equation for complex curvatures or complex bending moments is, respectively, extended from the case of circular crosssections to that of non-circular ones. The equilibrium of a rod constrained on a surface is investigated.

Structural, elastic, and electronic properties of recently discovered ternary silicide superconductor Li_2IrSi_3: An ab-initio study

The structural, elastic, and electronic properties of the very recently discovered ternary silicide superconductor, Li2IrSi3, are calculated using an ab-initio technique. We adopt the plane-wave pseudopotential approach within the frame- work of the first-principles density functional theory （DFT） implemented by the CASTEP code. The calculated structural parameters show reasonable agreement with the experimental results. The elastic moduli of this interesting material are calculated for the first time. The electronic band structure and electronic energy density of states indicate the strong cova- lent Ir-Si and Si-Si bonding, which leads to the formation of the rigid structure of Li2IrSi3. Strong covalency gives rise to a high Debye temperature in this system. We discuss the theoretical results in detail in this paper.

SEMI-SUPERVISED RADIO TRANSMITTER CLASSIFICATION BASED ON ELASTIC SPARSITY REGULARIZED SVM

Non-collaborative radio transmitter recognition is a significant but challenging issue, since it is hard or costly to obtain labeled training data samples. In order to make effective use of the unlabeled samples which can be obtained much easier, a novel semi-supervised classification method named Elastic Sparsity Regularized Support Vector Machine (ESRSVM) is proposed for radio transmitter classification. ESRSVM first constructs an elastic-net graph over data samples to capture the robust and natural discriminating information and then incorporate the information into the manifold learning framework by an elastic sparsity regularization term. Experimental results on 10 GMSK modulated Automatic Identification System radios and 15 FM walkie-talkie radios show that ESRSVM achieves obviously better performance than KNN and SVM, which use only labeled samples for classification, and also outperforms semi-supervised classifier LapSVM based on manifold regularization.

Tailorable,Lightweight and Superelastic Liquid Metal Monoliths for Multifunctional Electromagnetic Interference Shielding

Liquid metal(LM)has become an emerging material paradigm in the electromagnetic interference shielding field owing to its excellent electrical conductivity.However,the processing of lightweight bulk LM composites with finite package without leakage is still a great challenge,due to high surface tension and pump-out issues of LM.Here,a novel confined thermal expansion strategy based on expandable microsphere(EM)is proposed to develop a new class of LM-based monoliths with 3D continuous conductive network.The EM/LM monolith(EM/LMm)presents outstanding performance of lightweight like metallic aerogel(0.104 g cm^(-1)),high strength(3.43 MPa),super elasticity(90%strain),as well as excellent tailor ability and recyclability,rely on its unique gas-filled closed-cellular structure and refined LM network.Moreover,the assembled highly conducting EM/LMm exhibits a recorded shielding effectiveness(98.7 dB)over a broad frequency range of 8.2-40 GHz among reported LM-based composites at an ultra-low content of LM,and demonstrates excellent electromagnetic sealing capacity in practical electronics.The ternary EM/LM/Ni monoliths fabricated by the same approach could be promising universal design principles for multifunctional LM composites,and applicable in magnetic responsive actuator.

Super-Boost变换器的工作模式及输出纹波电压分析

Super-Boost变换器代替传统的充、放电模块可大大减小电源的质量和体积,提高其功率密度,因此在空间电力系统中具有广阔的应用前景。但由于Super-Boost变换器有多个功率元件,且存在电感电流反向流动特性,导致其供能模式及输出纹波电压较传统Boost变换器复杂。为了给Super-Boost变换器的分析和设计提供正确的理论指导,对Super-Boost变换器供能模式及输出纹波电压进行了深入研究。研究发现,电感L_(1)和L_(2)均存在连续导电模式、伪连续导电模式和伪断续导电模式等工作模式,建立各工作模式的临界电感和输出纹波电压解析数学模型,探讨峰值电流与电感间的关系,得到了满足设计要求的最小电容和最小电感,据此给出了变换器参数设计方法,实验结果验证了理论分析的正确性。

基于Super-Twisting滑模S面的无人机路径跟踪控制

针对小型固定翼无人机在执行任务时跟踪精度低以及容易受外界风影响的问题,设计基于Super-Twisting滑模S面(STSM S-Plane)的路径跟踪控制器,同时采用内外双环控制模式。外环即速度环采用Super-Twisting滑模控制,内环即姿态环采用S面控制。考虑到S面控制求导易导致积分爆炸的问题引入了二阶微分器,并对外界风组成进行建模研究。最后通过空间特殊曲线来验证所设计算法的控制性能。仿真结果表明,所设计的算法可以实现固定翼无人机对期望路径的精确跟踪,并具有良好的鲁棒性和抗干扰性能。

Elastic interaction between inclusions and tunable periodicity of superlattice structure in nanowires

The elastic stress distribution and the variation of the elastic energy with spacing between two inclusions of arbitrary sizes in an infinite isotropic cylindrical rod are obtained by an analytical approach and the phase field microelasticity(PFM)simulation.The results show a near-attraction and far-repulsion elastic interaction between two inclusions with hydrostatic dilatation.The critical spacing,at which the interaction changes from attraction to repulsion,is on the order of the radius of the rod,dependent on the length and Poisson’s ratio of inclusions.Furthermore,the elastic energy calculations and PFM simulation results indicate that applying the local radial stress on the rod surface can modulate the elastic interaction between inclusions and adjust the periodicity of the superlattice nanowire structure.This can provide some guidelines for the tunable construction of superlattice nanowire structures.

Elastic Constants of Superconducting MgB2 from Molecular Dynamics Simulations with Shell Model

The elastic constants of superconducting MgB2 are calculated using a molecular dynamics method (MD)with shell model. The lattice parameters, five independent elastic constants, equations of state (EOS), Debye temperature, and bulk modulus of MgB2 are obtained. Meanwhile, the dependence of the bulk modulus B, the lattice parameters a and c, and the unit cell volume V on the applied pressure are presented. It is demonstrated that the method introduced here can well reproduce the experimental results with a reasonable accuracy.

SUPERHARMONIC RESONANCES OF ELASTIC LINKAGES UNDER HAMONIC EXCITATION

Considering the geometric nonlinearity due to the large elastic deformations of flexible links, the superharmonic resonances of elastic linkages in the forms of ω1/3 and ω1/2 are studied by the method of multiple scales. The research shows that the analytical results are coincident with the experimental results.

基于改进型Super-twisting的双馈感应发电机直接功率控制

为提高双馈感应发电机(DFIG)直接功率控制的鲁棒性和抗干扰能力,提出一种改进型超螺旋滑模(STSMC)的直接功率控制(DPC)。首先,建立参数摄动下的DFIG最大功率捕获模型和定子磁场定向的双馈感应发电机模型;然后,将非奇异快速终端滑模面(NFTSM)与一种改进型超螺旋(Super-twisting)优化算法结合,设计DFIG直接功率控制器(IST-NFTSMC)。其中所设计的非奇异滑模面能有效避免传统滑模控制(SMC)的奇异现象,且改进超螺旋控制律能有效削弱NFTSMC抖振,提高功率控制精度;最后,通过仿真和实验,与PI控制和传统SMC控制相比,该控制能削弱DFIG功率与电流抖振问题,加快其收敛速度,提高DFIG直接功率控制稳态精度。

组态视角下我国物流业绿色全要素生产率提升路径研究--基于Super-SBM-Malmquist与fsQCA方法

通过整合TOE框架,提取互联网发展水平、新能源比例、创新能力、物流业集聚程度、市场化水平和对外开放程度6个指标为前因变量,以物流业绿色全要素生产率为结果变量,将我国30个省(自治区、直辖市)数据作为研究样本,运用fsQCA方法揭示导致我国物流业产生高与非高绿色全要素生产率的组态路径。研究发现:“十三五”期间我国物流业绿色全要素生产率持续进步;大部分省市区的物流业绿色全要素生产率有提升;产生高物流业绿色全要素生产率的路径可归纳为“互联网-对外开放-创新”驱动型、“互联网-对外开放-新能源-物流业集聚”驱动型和“新能源-市场化-物流业集聚”驱动型三种。

Perturbation of symmetries for super-long elastic slender rods

This paper analyses perturbations of Noether symmetry, Lie symmetry, and form invariance for super-long elastic slender rod systems. Criterion and structure equations of the symmetries after disturbance are proposed. Considering perturbation of all infinitesimal generators, three types of adiabatic invariants induced by perturbation of symmetries for the system are obtained.

Structure properties and Noether symmetries for super-long elastic slender rod

DNA is a nucleic acid molecule with double-helical structures that are special symmetrical structures attracting great attention of numerous researchers. The super-long elastic slender rod, an important structural model of DNA and other long-train molecules, is a useful tool in analysing the symmetrical properties and the stabilities of DNA. This paper studies the structural properties of a super-long elastic slender rod as a structural model of DNA by using Kirchhoff＇s analogue technique and presents the Noether symmetries of the model by using the method of infinitesimal transformation. Baaed on Kirchhoff＇s analogue it analyses the generalized Hamilton canonical equations. The infinitesimal transfornaationa with rcspect to the radial coordinnte, the gonarnlizod coordinates, and the Cluasi-momenta of 5he model are introduced. The Noether gymmetries and conserved qugntities of the model are obtained.

TP347H与Super304H耐热钢热疲劳过程的变形与开裂行为研究

基于金属板材热疲劳试验方法(HB 6660-2011),对比分析了TP347H和Super304H两种耐热钢的供货态、相同热处理条件下的固溶态和时效态试样在热疲劳过程中底部尺寸的变形行为,以及缺口部位裂纹形貌。结果表明:这3种状态Super304H钢在热疲劳试验后的变形均小于相应TP347H钢的,TP347H缺口呈现相对较大的钝化,时效态试样钝化最大,裂纹最短。缺口附近的观察结果,TP347H在缺口附近龟裂损伤程度弱于Super304H钢的,开裂方式主要为沿晶开裂,也有部分穿晶开裂。

Composition effect on elastic properties of model NiCo-based superalloys

NiCo-based superalloys exhibit higher strength and creep resistance over conventional superalloys.Compositional effects on elastic properties of the γ and γ' phases in newly-developed NiCo-based superalloys were investigated by first-principles calculation combined with special quasi-random structures.The lattice constant,bulk modulus,and elastic constants vary linearly with the Co concentration in the NiCo solution.In the selected(Ni,Co)3(Al,W)and(Ni,Co)3(Al,Ti)model γ' phase,the lattice constant,and bulk modulus show a linear trend with alloying element concentrations.The addition of Co,Ti,and W can regulate lattice mismatch and increase the bulk modulus,simultaneously.W-addition shows excellent performance in strengthening the elastic properties in the γ' phase.Systems become unstable with higher W and Ni contents,e.g.,(Ni0.75Co0.25)3(Al0.25 W0.75),and become brittle with higher W and Co addition,e.g.,Co3(Al0.25 W0.75).Furthermore,Co,Ti,and W can increase the elastic constants on the whole,and such high elastic constants always correspond to a high elastic modulus.The anisotropy index always corresponds to the nature of Young's modulus in a specific direction.

Dependence of elastic strain field on the self-organized ordering of quantum dot superlattices

A systematic investigation of the strain distribution of self-organized, lens-shaped quantum dot in the case of groffth direction on （001） substrate was presented. The three-dimensional finite element analysis for an array of dots was used for the strain calculation. The dependence of the strain energy density distribution on the thickness of the capping layer was investigated in detail when the elastic characteristics of the matrix material were anisotropic. It is shown that the elastic anisotropic greatly influences the stress, strain, and strain energy density in the quantum dot structures. The anisotropic ratio of the matrix material and the combination with different thicknesses of the capping layer, may lead to different strain energy density minimum locations on the capping layer surface, which can result in various vertical ordering phenomena for the next layer of quantum dots, i.e. partial alignment, random alignment, and complete alignment.

Priming mesenchymal stem cells to develop “super stem cells”

The stem cell pre-treatment approaches at cellular and sub-cellular levels encompass physical manipulation of stem cells to growth factor treatment,genetic manipulation,and chemical and pharmacological treatment,each strategy having advantages and limitations.Most of these pre-treatment protocols are non-combinative.This editorial is a continuum of Li et al’s published article and Wan et al’s editorial focusing on the significance of pre-treatment strategies to enhance their stemness,immunoregulatory,and immunosuppressive properties.They have elaborated on the intricacies of the combinative pre-treatment protocol using pro-inflammatory cytokines and hypoxia.Applying a well-defined multi-pronged combinatorial strategy of mesenchymal stem cells(MSCs),pre-treatment based on the mechanistic understanding is expected to develop“Super MSCs”,which will create a transformative shift in MSC-based therapies in clinical settings,potentially revolutionizing the field.Once optimized,the standardized protocols may be used with slight modifications to pre-treat different stem cells to develop“super stem cells”with augmented stemness,functionality,and reparability for diverse clinical applications with better outcomes.