Ulva prolifera is the causative species of the annually occurring large-scale green tides in China since 2007.Its specific biological features on reproductivity strategies,as well as intra-species genetic diversity,ar...Ulva prolifera is the causative species of the annually occurring large-scale green tides in China since 2007.Its specific biological features on reproductivity strategies,as well as intra-species genetic diversity,are still largely unknown,especially at the genome level,despite their importance in understanding the formation and outbreak of massive green tides.In the present study,the restriction site-associated DNA genotyping approach(2b-RAD)was adopted to identify the genome-wide single-nucleotide polymorphisms(SNPs)of 54 individual thalli including samples collected from Subei Shoal in 2019 and Qingdao coast from 2019 to 2021.SNPs genotype results revealed that most of the thalli in 2019 and 2020 were haploid gametophytes,while only half of the thalli were gametophytes in 2021,indicating flexibility in the reproductive strategies for the formation of the green tides among different years and the dominance of asexual and vegetative reproductive mode for the floating period.Besides,population analysis was conducted,and it revealed a very low genetic diversity among samples from Subei Shoal and the Qingdao coast in the same year and a higher divergence among samples in different years.The results showed the efficiency of 2b-RAD in the exploration of SNPs in U.prolifera and provided the first genome-wide scale evidence for the origin of the large-scale green tides on the Qingdao coast.This study improved our understanding of the reproductive strategy and genetic diversity of the green tide causative species and will help further reveal the biological causes of the green tide in China.展开更多
Automatically detecting Ulva prolifera(U.prolifera)in rainy and cloudy weather using remote sensing imagery has been a long-standing problem.Here,we address this challenge by combining high-resolution Synthetic Apertu...Automatically detecting Ulva prolifera(U.prolifera)in rainy and cloudy weather using remote sensing imagery has been a long-standing problem.Here,we address this challenge by combining high-resolution Synthetic Aperture Radar(SAR)imagery with the machine learning,and detect the U.prolifera of the South Yellow Sea of China(SYS)in 2021.The findings indicate that the Random Forest model can accurately and robustly detect U.prolifera,even in the presence of complex ocean backgrounds and speckle noise.Visual inspection confirmed that the method successfully identified the majority of pixels containing U.prolifera without misidentifying noise pixels or seawater pixels as U.prolifera.Additionally,the method demonstrated consistent performance across different im-ages,with an average Area Under Curve(AUC)of 0.930(+0.028).The analysis yielded an overall accuracy of over 96%,with an average Kappa coefficient of 0.941(+0.038).Compared to the traditional thresholding method,Random Forest model has a lower estimation error of 14.81%.Practical application indicates that this method can be used in the detection of unprecedented U.prolifera in 2021 to derive continuous spatiotemporal changes.This study provides a potential new method to detect U.prolifera and enhances our under-standing of macroalgal outbreaks in the marine environment.展开更多
基金Supported by the Laoshan Laboratory (No.LSKJ202204005)the Mount Tai Scholar Climbing Plan to Song SUNthe Open Fund of CAS Key Laboratory of Marine Ecology and Environmental Sciences,Institute of Oceanology,Chinese Academy of Sciences (No.KLMEES201801)
文摘Ulva prolifera is the causative species of the annually occurring large-scale green tides in China since 2007.Its specific biological features on reproductivity strategies,as well as intra-species genetic diversity,are still largely unknown,especially at the genome level,despite their importance in understanding the formation and outbreak of massive green tides.In the present study,the restriction site-associated DNA genotyping approach(2b-RAD)was adopted to identify the genome-wide single-nucleotide polymorphisms(SNPs)of 54 individual thalli including samples collected from Subei Shoal in 2019 and Qingdao coast from 2019 to 2021.SNPs genotype results revealed that most of the thalli in 2019 and 2020 were haploid gametophytes,while only half of the thalli were gametophytes in 2021,indicating flexibility in the reproductive strategies for the formation of the green tides among different years and the dominance of asexual and vegetative reproductive mode for the floating period.Besides,population analysis was conducted,and it revealed a very low genetic diversity among samples from Subei Shoal and the Qingdao coast in the same year and a higher divergence among samples in different years.The results showed the efficiency of 2b-RAD in the exploration of SNPs in U.prolifera and provided the first genome-wide scale evidence for the origin of the large-scale green tides on the Qingdao coast.This study improved our understanding of the reproductive strategy and genetic diversity of the green tide causative species and will help further reveal the biological causes of the green tide in China.
基金Under the auspices of National Natural Science Foundation of China(No.42071385)National Science and Technology Major Project of High Resolution Earth Observation System(No.79-Y50-G18-9001-22/23)。
文摘Automatically detecting Ulva prolifera(U.prolifera)in rainy and cloudy weather using remote sensing imagery has been a long-standing problem.Here,we address this challenge by combining high-resolution Synthetic Aperture Radar(SAR)imagery with the machine learning,and detect the U.prolifera of the South Yellow Sea of China(SYS)in 2021.The findings indicate that the Random Forest model can accurately and robustly detect U.prolifera,even in the presence of complex ocean backgrounds and speckle noise.Visual inspection confirmed that the method successfully identified the majority of pixels containing U.prolifera without misidentifying noise pixels or seawater pixels as U.prolifera.Additionally,the method demonstrated consistent performance across different im-ages,with an average Area Under Curve(AUC)of 0.930(+0.028).The analysis yielded an overall accuracy of over 96%,with an average Kappa coefficient of 0.941(+0.038).Compared to the traditional thresholding method,Random Forest model has a lower estimation error of 14.81%.Practical application indicates that this method can be used in the detection of unprecedented U.prolifera in 2021 to derive continuous spatiotemporal changes.This study provides a potential new method to detect U.prolifera and enhances our under-standing of macroalgal outbreaks in the marine environment.
