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Introgression of QTL from Aegilops tauschii enhances yield-related traits in common wheat
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作者 Feifei Ma Ranzhe Li +12 位作者 Guanghui Guo Fang Nie Lele Zhu Wenjuan Liu Linlin Lyu Shenglong Bai Xinpeng Zhao Zheng Li Dale Zhang Hao Li Suoping Li Yun Zhou Chun-Peng Song 《The Crop Journal》 SCIE CSCD 2023年第5期1521-1532,共12页
To break the narrow diversity bottleneck of the wheat D genome, a set of Aegilops tauschii-wheat introgression(A-WI) lines was developed by crossing Ae. tauschii accession T015 with common wheat elite cultivar Zhoumai... To break the narrow diversity bottleneck of the wheat D genome, a set of Aegilops tauschii-wheat introgression(A-WI) lines was developed by crossing Ae. tauschii accession T015 with common wheat elite cultivar Zhoumai 18(Zhou18). A high-density genetic map was constructed based on Single Nucleotide Polymorphism(SNP) markers and 15 yield-related traits were evaluated in 11 environments for detecting quantitative trait loci(QTL). A total of 27 environmentally stable QTL were identified in at least five environments, 20 of which were derived from Ae. tauschii T015, explaining up to 24.27% of the phenotypic variations. The major QTL for kernel length(KL), QKl-2D.5, was delimited to a physical interval of approximately 2.6 Mb harboring 52 candidate genes. Three Kompetitive Allele Specific PCR(KASP)markers were successfully developed based on nonsynonymous nucleotide mutations of candidate gene AetT093_2Dv1G100900.1 and showed that A-WI lines with the T015 haplotype had significantly longer KL than the Zhou18 haplotype across all 11 environments. Four primary valuable A-WIs with good trait performance and carrying yield-related QTL were selected for breeding improvement. The results will facilitate the efficient transfer of beneficial genes from Ae. tauschii into wheat cultivars to improve wheat yield and other traits. 展开更多
关键词 A-WI Aegilops tauschii WHEAT QTL mapping yield-related traits
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Identification of QTLs for Yield-Related Traits in the Recombinant Inbred Line Population Derived from the Cross Between a Synthetic Hexaploid Wheat-Derived Variety Chuanmai 42 and a Chinese Elite Variety Chuannong 16 被引量:7
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作者 TANG Yong-lu LI Jun +4 位作者 WU Yuan-qi WEI Hui-ting LI Chao-SU YANG Wu-yun CHEN Fang 《Agricultural Sciences in China》 CAS CSCD 2011年第11期1665-1680,共16页
Synthetic hexaploid wheat (SHW) represents a valuable source of new resistances to a range of biotic and abiotic stresses. A recombinant inbred line (RIL) population with 127 recombinant inbred lines derived from ... Synthetic hexaploid wheat (SHW) represents a valuable source of new resistances to a range of biotic and abiotic stresses. A recombinant inbred line (RIL) population with 127 recombinant inbred lines derived from a SHW-derived variety Chuanmai 42 crossing with a Chinese spring wheat variety Chuannong 16 was used to map QTLs for agronomic traits including grain yield, grains per square meter, thousand-kernel weight, spikes per square meter, grain number per spike, grains weight per spike, and biomass yield. The population was genotyped using 184 simple-sequence repeat (SSR) markers and 34 sequence-related amplified polymorphism (SRAP) markers. Of 76 QTLs (LOD〉2.5) identified, 42 were found to have a positive effect from Chuanmai 42. The QTL QGy.saas-4D.2 associated with grain yield on chromosome 4D was detected in four of the six environments and the combined analysis, and the mean yield, across six environments, of individuals carrying the Chuanmai 42 allele at this locus was 8.9% higher than that of those lines carrying the Chuannong 16 allele. Seven clusters of the yield-coincident QTLs were detected on 1A, 4A, 3B, 5B, 4D, and 7D. 展开更多
关键词 yield-related traits quantitative trait loci Chuanmai 42 synthetic hexaploid wheat
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Identifying Genomic Regions Conferring Morphological and Yield-related Traits in Soybean Based On A Four-way Recombinant Inbred Line Population
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作者 Ning Hai-long Yang Chang +2 位作者 Hu Bo Sun Xu Li Wen-xia 《Journal of Northeast Agricultural University(English Edition)》 CAS 2022年第3期1-10,共10页
Improvement of seed yield of soybean(Glycine max(L.)Merr.)is generally achieved by combining morphological and yield-related traits,such as plant height(PH),node number on main stem(NN),pod number per plant(NP),seed n... Improvement of seed yield of soybean(Glycine max(L.)Merr.)is generally achieved by combining morphological and yield-related traits,such as plant height(PH),node number on main stem(NN),pod number per plant(NP),seed number per plant(NS),100-seed weight(HSW)and seed weight per plant(SWPP).Identifying quantitative trait loci(QTLs)for morphological and yield-related traits is therefore important for breeding.In this study,a four-way recombinant inbred line population comprising 160 lines derived from the cross(Kenfeng14×Kenfeng15)×(Heinong48×Kenfeng19)was planted in five different environments and morphological and yield-related trait data were used to identify QTLs by the inclusive composite interval mapping method.Totally 38 QTLs for PH,40 QTLs for NN,26 QTLs for NP,10 QTLs for NS,26 QTLs for HSW and 49 QTLs for SWPP were detected in 125 genomic regions.Single QTLs explained 2.17%-14.60%,2.00%-10.04%,2.37%-9.77%,2.62%-8.61%,0.47%-6.51%and 0.14%-12.39%of the phenotypic variation for PH,NN,NP,NS,HSW and SWPP,respectively.Among these 125 genomic regions,120 were newly associated with morphological and yield-related traits.The results would facilitate the molecular breeding of morphological and yield-related traits in soybean. 展开更多
关键词 SOYBEAN morphological and yield-related traits QTL four-way recombinant inbred line population
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Association mapping and domestication analysis to dissect genetic improvement process of upland cotton yield-related traits in China
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作者 GUO Chunping PAN Zhenyuan +10 位作者 YOU Chunyuan ZHOU Xiaofeng HUANG Cong SHEN Chao ZHAO Ruihai YANG Qingyong ZHU Longfu SHAHZAD Raheel MENG Fande LIN Zhongxu NIE Xinhui 《Journal of Cotton Research》 2021年第2期126-137,共12页
Background: Cotton fiber yield is a complex trait,which can be influenced by multiple agronomic traits.Unravelling the genetic basis of cotton fiber yield-related traits contributes to genetic improvement of cotton.Re... Background: Cotton fiber yield is a complex trait,which can be influenced by multiple agronomic traits.Unravelling the genetic basis of cotton fiber yield-related traits contributes to genetic improvement of cotton.Results: In this study,503 upland cotton varieties covering the four breeding stages(BS1–BS4,1911–2011)in China were used for association mapping and domestication analysis.One hundred and forty SSR markers significantly associated with ten fiber yield-related traits were identified,among which,29 markers showed an increasing trend contribution to cotton yield-related traits from BS1 to BS4,and 26 markers showed decreased trend effect.Four favorable alleles of 9 major loci(R^(2)≥3)were strongly selected during the breeding stages,and the candidate genes of the four strongly selected alleles were predicated according to the gene function annotation and tissue expression data.Conclusions :The study not only uncovers the genetic basis of 10 cotton yield-related traits but also provides genetic evidence for cotton improvement during the cotton breeding process in China. 展开更多
关键词 Upland cotton Genome wide association study yield-related traits Favorable alleles
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Response of phenology- and yield-related traits of maize to elevated temperature in a temperate region 被引量:3
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作者 Dana Shim Kyu-Jong Lee Byun-Woo Lee 《The Crop Journal》 SCIE CAS CSCD 2017年第4期305-316,共12页
Extreme high temperatures detrimental to maize production are projected to occur more frequently with future climate change.Phenology and yield-related traits were investigated under several levels of elevated tempera... Extreme high temperatures detrimental to maize production are projected to occur more frequently with future climate change.Phenology and yield-related traits were investigated under several levels of elevated temperature in two early-maturing hybrid cultivars:Junda 6(grown in northeastern China)and Chalok 1(grown in South Korea).They were cultivated in plastic houses in Suwon,Korea(37.27°N,126.99°E)held at target temperatures of ambient(AT),AT+1.5°C,AT+3°C,and AT+5°C at one sowing date in 2013 and three different sowing dates in 2014.Vegetative and reproductive growth durations showed variation depending on sowing date,experimental year,and cultivar.Growth duration tended to decrease,but not necessarily,with temperature elevation,but somewhat increased again above a certain temperature.High temperature-dependent variation was greater during grain filling than in the vegetative period before anthesis.Elevated temperature showed no significant effects on duration or peak dates of silking and anthesis,and thus on anthesis–silking interval.Grain yield tended to decrease with temperature elevation above ambient,showing a sharper linear decrease with mean growing season temperature increase in Junda 6 than in Chalok 1.The decrease in kernel number accounted for a much greater contribution to the yield reductions due to temperature elevation than did the decrease in individual kernel weight in both cultivars.Individual harvestable kernel weight was not significantly affected by temperature elevation treatments.Kernel number showed a linear decrease with mean growth temperature from early ear formation to early grain-filling stage,with Junda 6 showing a much severer decrease than Chalok 1.Kernel number reduction due to temperature elevation was attributable more to the decrease in differentiated ovule number than to the decrease in kernel set in Chalok 1,but largely to the decrease of kernel set in Junda 6. 展开更多
关键词 MAIZE Elevated temperature PHENOLOGY YIELD yield-related traits
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Genetic bases of source-,sink-,and yield-related traits revealed by genome-wide association study in Xian rice 被引量:8
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作者 Yun Wang Yunlong Pang +4 位作者 Kai Chen Laiyuan Zhai Congcong Shen Shu Wang Jianlong Xu 《The Crop Journal》 SCIE CAS CSCD 2020年第1期119-131,共13页
The source-sink relationship determines the ultimate grain yield.We investigated the genetic basis of the relationship between source and sink and yield potential in rice.In two environments,we identified quantitative... The source-sink relationship determines the ultimate grain yield.We investigated the genetic basis of the relationship between source and sink and yield potential in rice.In two environments,we identified quantitative trait loci(QTL)associated with sink capacity(total spikelet number per panicle and thousand-grain weight),source leaf(flag leaf length,flag leaf width and flag leaf area),source-sink relationship(total spikelet number to flag leaf area ratio)and yield-related traits(filled grain number per panicle,panicle number per plant,grain yield per plant,biomass per plant,and harvest index)by genome-wide association analysis using 272 Xian(indica)accessions.The panel showed substantial variation for all traits in the two environments and revealed complex phenotypic correlations.A total of 70 QTL influencing the 11 traits were identified using 469,377 high-quality SNP markers.Five QTL were detected consistently in four chromosomal regions in both environments.Five QTL clusters simultaneously affected source,sink,source–sink relationship,and grain yield traits,probably explaining the genetic basis of significant correlations of grain yield with source and sink traits.We selected 24 candidate genes in the four consistent QTL regions by identifying linkage disequilibrium(LD)blocks associated with significant SNPs and performing haplotype analysis.The genes included one cloned gene(NOG1)and three newly identified QTL(qHI6,qTGW7,and qFLA8).These results provide a theoretical basis for high-yield rice breeding by increasing and balancing source–sink relationships using marker-assisted selection. 展开更多
关键词 RICE GWAS Source–sink relationship Quantitative trait loci/locus(QTL) Candidate gene
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Molecular Mapping of QTLs for Yield and Yield-Related Traits in Oryza sativa cv Swarna × O. nivara (IRGC81848) Backcross Population 被引量:3
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作者 B. P. MALLIKARJUNA SWAMY K. KALADHAR +2 位作者 M. S. RAMESHA B. C. VIRAKTAMATH N. SARLA 《Rice science》 SCIE 2011年第3期178-186,共9页
Advanced backcross QTL analysis was used to identify QTLs for seven yield and yield-related traits in a BC2F2 population from the cross between a popular Oryza sativa cv Swarna and O. nivara IRGC81848. Transgressive s... Advanced backcross QTL analysis was used to identify QTLs for seven yield and yield-related traits in a BC2F2 population from the cross between a popular Oryza sativa cv Swarna and O. nivara IRGC81848. Transgressive segregants with more than 15% increased effect over Swarna were observed for all the traits except days to heading and days to 50% flowering. Thirty QTLs were detected for seven yield and yield-related traits using interval and composite interval mapping. Enhancing alleles at 13 (45%) of these QTLs were derived from O. nivara, and enhancing alleles at all the QTLs for stem diameter and rachis diameter were derived from O. nivara. Three stem diameter QTLs, two rachis diameter QTLs and one number of secondary branches QTL identified by both Interval and composite interval mapping contributed more than 15% of the total phenotypic variance. The QTL epistasis was significant for stem diameter and plot yield. The most significant QTLs qSD7.2, qSD8.1 and qSD9.1 for stem diameter, qRD9.1 for rachis diameter and qNSB1.1 for number of secondary branches are good targets to evaluate their use in marker-assisted selection. O. nivara is a good source of novel alleles for yield related traits and reveals major effect QTLs suitable for marker-assisted selection. 展开更多
关键词 Oryza sativa Oryza nivara stem diameter rachis diameter YIELD yield components quantitative trait locus
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QTL analysis across multiple environments reveals promising chromosome regions associated with yield-related traits in maize under drought conditions 被引量:3
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作者 Xinmin Hu Guihua Wang +12 位作者 Xuemei Du Hongwei Zhang Zhenxiang Xu Jie Wang Guo Chen Bo Wang Xuhui Li Xunji Chen Junjie Fu Jun Zheng Jianhua Wang Riliang Gu Guoying Wang 《The Crop Journal》 SCIE CSCD 2021年第4期759-766,共8页
Drought is one of the most critical abiotic stresses influencing maize yield. Improving maize cultivars with drought tolerance using marker-assisted selection requires a better understanding of its genetic basis. In t... Drought is one of the most critical abiotic stresses influencing maize yield. Improving maize cultivars with drought tolerance using marker-assisted selection requires a better understanding of its genetic basis. In this study, a doubled haploid(DH) population consisting of 217 lines was created by crossing the inbred lines Han 21(drought-tolerant) and Ye 478(drought-sensitive). The population was genotyped with a 6 K SNP assay and 756 SNP(single nucleotide polymorphism) markers were used to construct a linkage map with a length of 1344 c M. Grain yield(GY), ear setting percentage(ESP), and anthesis–silking interval(ASI) were recorded in seven environments under well-watered(WW) and water-stressed(WS) regimes. High phenotypic variation was observed for all traits under both water regimes. Using the LSMEAN(least-squares mean) values from all environments for each trait, 18 QTL were detected, with 9 associated with the WW and 9 with the WS regime. Four chromosome regions,Chr. 3: 219.8–223.7 Mb, Chr. 5: 191.5–194.7 Mb, Chr. 7: 132.2–135.6 Mb, and Chr. 10: 88.2–89.4 Mb, harbored at least 2 QTL in each region, and QTL co-located in a region inherited favorable alleles from the same parent. A set of 64 drought-tolerant BC_3F_6 lines showed preferential accumulation of the favorable alleles in these four regions, supporting an association between the four regions and maize drought tolerance. QTL-by-environment interaction analysis revealed 28 ed QTL(environment-dependent QTL) associated with the WS regime and 22 associated with the WW regime for GY, ESP, and ASI. All WS QTL and55.6% of WW QTL were located in the ed QTL regions. The hotspot genomic regions identified in this work will support further fine mapping and marker-assisted breeding of drought-tolerant maize. 展开更多
关键词 DROUGHT YIELD Quantitative trait locus INTROGRESSION MAIZE
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Detection of Favorable Alleles for Quality- and Yield-related Traits in Wheat Using a Backcross Population
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作者 Yulian LI Lixia TIAN +5 位作者 Jie GAO Guoqi SONG Shujuan ZHANG Rongzhi ZHANG Wei LI Genying LI 《Agricultural Biotechnology》 CAS 2019年第3期5-12,共8页
Development of wheat varieties with high yield and good quality has been a major objective in wheat breeding.A BC 1 F 2-3 population was used to detect QTLs for wheat quality related traits: SDS-sedimentation value (S... Development of wheat varieties with high yield and good quality has been a major objective in wheat breeding.A BC 1 F 2-3 population was used to detect QTLs for wheat quality related traits: SDS-sedimentation value (Ssd),grain protein content (GPC),grain hardness (GH) and 11 mixograph parameters,as well as five agronomic traits: spike length (SL),spikelet number per spike (SPN),grain number per spike (GN),thousand-grain weight (TGW),and plant height (PH).A total of 44 putative QTLs were detected in the present study,31 for quality parameters and 13 for important agronomic traits,including three important major QTLs.One major QTL for Ssd QSsd.saas-1B.1,linked to barc137,explained on average 21.1% of the phenotypic variation in three environments.The allele increasing Ssd at this locus also significantly increased GN.The second locus on chromosome 1B with the linked marker Barc 61 was a major locus for mixograph parameters.It explained 21.3%-32.5%,24.3%-30.6%,30.6%-37% and 20.1%-22.7% of phenotypic variation for mixing tolerance (MT),weakening slope (WS),midline peak time (MPTi) and midline time x =8 value (MTxW),respectively.The third major QTL,explaining above 40% of plant height variation,close to Rht-B 1 on the short arm of chromosome 4BS,co-located with QTL for quality and yield-related traits. 展开更多
关键词 QTL WHEAT QUALITY RELATED traits YIELD RELATED traits
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Genetic relationship of rapeseed yield-related traits revealed by elite lines under multiple environments
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作者 Hui WANG Qiong HU +6 位作者 Jun WANG Yunchang LI Li FU Jia LIU Zhongfen WEI Wenxiang WANG Desheng MEI 《Oil Crop Science》 2016年第2期26-34,共9页
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Genome-wide association study exposed the pleiotropic genes for yield-related and oil quality traits in Brassica napus L.
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作者 Yang Xiang M.M.U.Helal +8 位作者 Longbing Liang Minqin Zhang Hongshi Han Xianglai Dai Jixian Zhao Dalun Chen Xianping Wang Min Li Chuanji Zhao 《Oil Crop Science》 CSCD 2023年第3期156-164,共9页
Oilseed rape(Brassica napus L.) is an allotetraploid(AACC,2n=38) crop,valued for its edible oil and protein content.seed yield and nutritional composition of rapeseed are influenced by its yield and oil quality traits... Oilseed rape(Brassica napus L.) is an allotetraploid(AACC,2n=38) crop,valued for its edible oil and protein content.seed yield and nutritional composition of rapeseed are influenced by its yield and oil quality traits.However,the genetic basis of yield-related and oil-quality traits remain ambiguous.A panel of 266 diversified oilseed rape accessions was genotyped using 223 simple sequence repeat(SSR) markers covering all 19 chromosomes to identify significant markers associated with yield and quality traits.Twelve yield-related and six quality traits were investigated in two consecutive years(2014 and 2015),with three replications in two environments(Changshun,CS;and Qinghe,QH).Using the model GLM with population structure and kinship(Q+K),a total of 25 significant SSR markers(P <0.001) were detected to be associated with these twelve yield-related and six quality traits,explaining 4.56%-19.17% of the phenotypic variation for each trait.Based on these markers,BnaA03g23490D, BnaC09g46370D,BnaA07g37150D,BnaA01g32590D, and BnaC09g37280D were identified as pleiotropic genes controlling multiple traits.These candidate genes illustrated the potential for the genetic understanding of yield and oil quality traits.Most importantly,these significant markers can be used for marker-assisted breeding of oilseed rape in different environments. 展开更多
关键词 Brassica napus GWAS yield-related and oil quality traits SSR markers
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Analysis of QTLs for yield-related traits in Yuanjiang common wild rice (Oryza rufipogon Griff.) 被引量:5
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作者 Qiang Fu Peijiang Zhang +6 位作者 Lubin Tan Zuofeng Zhu Dan Ma Yongcai Fu Xinchun Zhan Hongwei Cai Chuanqing Sun 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2010年第2期147-157,共11页
Using an accession of common wild rice (Oryza rufipogon Griff.) collected from Yuanjiang County, Yunnan Province, China, as the donor and an elite cultivar 93-11, widely used in two-line indica hybrid rice productio... Using an accession of common wild rice (Oryza rufipogon Griff.) collected from Yuanjiang County, Yunnan Province, China, as the donor and an elite cultivar 93-11, widely used in two-line indica hybrid rice production in China, as the recurrent parent, an advanced backcross populations were developed. Through genotyping of 187 SSR markers and investigation of six yield-related traits of two gen- erations (BC4F2 and BC4F4), a total of 26 QTLs were detected by employing single point analysis and interval mapping in both genera-tions. Of the 26 QTLs, the alleles of 10 (38.5%) QTLs originating from O. rufipogon had shown a beneficial effect for yield-related traits in the 93-11 genetic background. In addition, five QTLs controlling yield and its components were newly identified, indicating that there are potentially novel alleles in Yuanjiang common wild rice. Three regions underling significant QTLs for several yield-related traits were detected on chromosome 1, 7 and 12. The QTL clusters were founded and corresponding agronomic traits of those QTLs showed highly significant correlation, suggesting the pleiotropism or tight linkage. Fine-mapping and cloning of these yield-related QTLs from wild rice would be helpful to elucidating molecular mechanism of rice domestication and rice breeding in the future. 展开更多
关键词 common wild rice yield-related traits advanced backcross population QTL
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Genetic parameter evaluation for growth and cold resistance traits of the giant freshwater prawn Macrobrachium rosenbergii
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作者 Haihui TU Qianqian XING +7 位作者 Zhenxiao ZHONG Qiongying TANG Shaokui YI Zhenglong XIA Miaoying CAI Jingfen LI Quanxin GAO Guoliang YANG 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第2期609-619,共11页
The giant freshwater prawn Macrobrachium rosenbergii distributed from tropical to subtropical regions,is a warm-water species,and its survival temperature is 14-35°C,which greatly limits its culture cycle and cul... The giant freshwater prawn Macrobrachium rosenbergii distributed from tropical to subtropical regions,is a warm-water species,and its survival temperature is 14-35°C,which greatly limits its culture cycle and culture area in China.Therefore,it is urgent to cultivate a new high quality,high yield variety with improved cold-resistance,but the genetic parameters for cold-resistance traits are unknown in M.rosenbergii.In this study,the cold-resistance of adult M.rosenbergii populations was tested using the indoor artificial cooling method.Individuals were selected from 139 families of Shufeng G3 generation and cultured for 200 days.A linear mixed model was constructed by ASReml-R to evaluate the genetic parameters of the cold-resistance trait(cooling degree hours,CDH)and growth traits(body weight,BW,and body length,BL)based on the restricted maximum likelihood(REML)method.The results show that the heritability of CDH was low(0.12±0.05),while the growth traits(BW and BL)had low to moderate heritability,with 0.20±0.06 for BW and 0.06±0.04 for BL.The phenotypic and genetic correlation between BW and BL was significantly positive,but significantly negative phenotypic and genetic correlations were detected between CDH and BW and between CDH and BL.Furthermore,the analysis of the differences between cold-resistance and phenotypic traits showed that the female reproductive status,exoskeleton hardness and claw number of adult prawns had a great influence on the cold-resistance of M.rosenbergii(P<0.05),indicating that adults with claws and hard exoskeletons are preferred as parents in subsequent breeding selection.The present results can be attributed to the selection and breeding of a new cold-resistant variety of M.rosenbergii. 展开更多
关键词 COLD-RESISTANCE growth traits HERITABILITY CORRELATION Macrobrachium rosenbergii
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Remote sensing of quality traits in cereal and arable production systems:A review
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作者 Zhenhai Li Chengzhi Fan +8 位作者 Yu Zhao Xiuliang Jin Raffaele Casa Wenjiang Huang Xiaoyu Song Gerald Blasch Guijun Yang James Taylor Zhenhong Li 《The Crop Journal》 SCIE CSCD 2024年第1期45-57,共13页
Cereal is an essential source of calories and protein for the global population.Accurately predicting cereal quality before harvest is highly desirable in order to optimise management for farmers,grading harvest and c... Cereal is an essential source of calories and protein for the global population.Accurately predicting cereal quality before harvest is highly desirable in order to optimise management for farmers,grading harvest and categorised storage for enterprises,future trading prices,and policy planning.The use of remote sensing data with extensive spatial coverage demonstrates some potential in predicting crop quality traits.Many studies have also proposed models and methods for predicting such traits based on multiplatform remote sensing data.In this paper,the key quality traits that are of interest to producers and consumers are introduced.The literature related to grain quality prediction was analyzed in detail,and a review was conducted on remote sensing platforms,commonly used methods,potential gaps,and future trends in crop quality prediction.This review recommends new research directions that go beyond the traditional methods and discusses grain quality retrieval and the associated challenges from the perspective of remote sensing data. 展开更多
关键词 Remote sensing Quality traits Grain protein CEREAL
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Genome-wide association study identifies 12 new genetic loci associated with growth traits in pigs
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作者 Mu Zeng Binhu Wang +2 位作者 Lei Liu Yalan Yang Zhonglin Tang 《Journal of Integrative Agriculture》 SCIE CSCD 2024年第1期217-227,共11页
Growth traits are among the most important economic traits in pigs and are regulated by polygenes with complex regulatory mechanisms.As the major indicators of growth performance,the backfat thickness(BFT),loin eye ar... Growth traits are among the most important economic traits in pigs and are regulated by polygenes with complex regulatory mechanisms.As the major indicators of growth performance,the backfat thickness(BFT),loin eye area(LEA),and days to 100 kg(D100)traits are commonly used to the genetics improvement in pigs.However,the available genetic markers for these traits are limited.To uncover novel loci and candidate genes associated with growth performance,we collected the phenotypic information of BFT,LEA,and D100 in 1,186 pigs and genotyped all these individuals using the Neogen GGP porcine 80K BeadChip.We performed a genome-wide association study(GWAS)using 4 statistical models,including mixed linear models(MLM),fixed and random model circulating probability unification(FarmCPU),settlement of MLM under progressively exclusive relationships(SUPER),Bayesian-information and linkage-disequilibrium Iteratively nested keyway(Blink),and identified 5,3,and 6 high-confidence single nucleotide polymorphisms(SNPs)associated with BFT,LEA,and D100,respectively.Variant annotation and quantitative trait locus(QTL)mapping analysis suggested that6 genes(SKAP2,SATB1,PDE7B,PPP1R16B,WNT3,and WNT9B)were potentially associated with growth performance in pigs.Transcriptome analysis suggested that the expression of Src Kinase Associated Phosphoprotein 2(SKAP2)was higher in prenatal muscles than in postnatal muscles,and the expression of Phosphodiesterase 7B(PDE7B)continuously increased during the prenatal stages and gradually decreased after birth,implying their potential roles in prenatal skeletal muscle development.Overall,this study provides new candidate loci and genes for the genetic improvement of pigs. 展开更多
关键词 GWAS PIG growth trait QTL mapping skeletal muscle
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Effects of wind speed,underlying surface,and seed morphological traits on the secondary seed dispersal in the Tengger Desert,China
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作者 QU Wenjie ZHAO Wenzhi +3 位作者 YANG Xinguo WANG Lei ZHANG Xue QU Jianjun 《Journal of Arid Land》 SCIE CSCD 2024年第4期531-549,共19页
The maintenance of sand-fixing vegetation is important for the stability of artificial sand-fixing systems in which seed dispersal plays a key role.Based on field wind tunnel experiments using 11 common plant species ... The maintenance of sand-fixing vegetation is important for the stability of artificial sand-fixing systems in which seed dispersal plays a key role.Based on field wind tunnel experiments using 11 common plant species on the southeastern edge of the Tengger Desert,China,we studied the secondary seed dispersal in the fixed and semi-fixed sand dunes as well as in the mobile dunes in order to understand the limitations of vegetation regeneration and the maintenance of its stability.Our results indicated that there were significant variations among the selected 11 plant species in the threshold of wind speed(TWS).The TWS of Caragana korshinskii was the highest among the 11 plant species,whereas that of Echinops gmelinii was the lowest.Seed morphological traits and underlying surface could generally explain the TWS.During the secondary seed dispersal processes,the proportions of seeds that did not disperse(no dispersal)and only dispersed over short distance(short-distance dispersal within the wind tunnel test section)were significantly higher than those of seeds that were buried(including lost seeds)and dispersed over long distance(long-distance dispersal beyond the wind tunnel test section).Compared with other habitats,the mobile dunes were the most difficult places for secondary seed dispersal.Buried seeds were the easiest to be found in the semi-fixed sand dunes,whereas fixed sand dunes were the best sites for seeds that dispersed over long distance.The results of linear mixed models showed that after controlling the dispersal distance,smaller and rounder seeds dispersed farther.Shape index and wind speed were the two significant influencing factors on the burial of seeds.The explanatory power of wind speed,underlying surface,and seed morphological traits on the seeds that did not disperse and dispersed over short distance was far greater than that on the seeds that were buried and dispersed over long distance,implying that the processes and mechanisms of burial and long-distance dispersal are more complex.In summary,most seeds in the study area either did not move,were buried,or dispersed over short distance,promoting local vegetation regeneration. 展开更多
关键词 seed dispersal seed morphological traits wind speed vegetation regeneration wind tunnel Tengger Desert
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Variation Characteristics of Root Traits of Different Alfalfa Cultivars under Saline-Alkaline Stress and their Relationship with Soil Environmental Factors
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作者 Tian-Jiao Wei Guang Li +6 位作者 Yan-Ru Cui Jiao Xie Xing-Ai Gao Xing Teng Xin-Ying Zhao Fa-Chun Guan Zheng-Wei Liang 《Phyton-International Journal of Experimental Botany》 SCIE 2024年第1期29-43,共15页
Soil salinization is the main factor that threatens the growth and development of plants and limits the increase of yield.It is of great significance to study the key soil environmental factors affecting plant root tr... Soil salinization is the main factor that threatens the growth and development of plants and limits the increase of yield.It is of great significance to study the key soil environmental factors affecting plant root traits to reveal the adaptation strategies of plants to saline-alkaline-stressed soil environments.In this study,the root biomass,root morphological parameters and root mineral nutrient content of two alfalfa cultivars with different sensitivities to alkaline stress were analyzed with black soil as the control group and the mixed saline-alkaline soil with a ratio of 7:3 between black soil and saline-alkaline soil as the saline-alkaline treatment group.At the same time,the correlation analysis of soil salinity indexes,soil nutrient indexes and the activities of key enzymes involved in soil carbon,nitrogen and phosphorus cycles was carried out.The results showed that compared with the control group,the pH,EC,and urease(URE)of the soil surrounding the roots of two alfalfa cultivars were significantly increased,while soil total nitrogen(TN),total phosphorus(TP),organic carbon(SOC),andα-glucosidase activity(AGC)were significantly decreased under saline-alkaline stress.There was no significant difference in root biomass and root morphological parameters of saline-alkaline tolerant cultivar GN under saline-alkaline stress.The number of root tips(RT),root surface area(RS)and root volume(RV)of AG were reduced by 61.16%,44.54%,and 45.31%,respectively,compared with control group.The ratios of K^(+)/Na^(+),Ca^(2+)/Na^(+)and Mg^(2+)/Na^(+)of GN were significantly higher than those of AG(p<0.05).The root fresh weight(RFW)and dry weight(RDW),root length(RL),RV and RT of alfalfa were positively regulated by soil SOC and TN,but negatively regulated by soil pH,EC,and URE(p<0.01).Root Ca^(2+)/Na+ratio was significantly positively correlated with soil TN,TP and SOC(p<0.01).The absorption of Mg and Ca ions in roots is significantly negatively regulated by soilβ-glucosidase activity(BGC)and acid phosphatase activity(APC)(p<0.05).This study improved knowledge of the relationship between root traits and soil environmental factors and offered a theoretical framework for elucidating how plant roots adapt to saline-alkaline stressed soil environments. 展开更多
关键词 Saline-alkaline stress ALFALFA root traits soil environmental factors correlation analysis
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The Impact of Big Five Personality Traits on Older Europeans’ Physical Health
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作者 Eleni Serafetinidou Christina Parpoula 《Journal of Biomedical Science and Engineering》 2024年第2期41-56,共16页
Investigating the role of Big Five personality traits in relation to various health outcomes has been extensively studied. The impact of “Big Five” on physical health is here explored for older Europeans with a focu... Investigating the role of Big Five personality traits in relation to various health outcomes has been extensively studied. The impact of “Big Five” on physical health is here explored for older Europeans with a focus on examining age groups differences. The study sample included 378,500 respondents derived from the seventh data wave of Survey of Health, Aging and Retirement in Europe (SHARE). The physical health status of older Europeans was estimated by constructing an index considering the combined effect of well-established health indicators such as the number of chronic diseases, mobility limitations, limitations with basic and instrumental activities of daily living, and self-perceived health. This index was used for an overall physical health assessment, for which the higher the score for an individual, the worst health level. Then, through a dichotomization process applied to the retrieved Principal Component Analysis scores, a two-group discrimination (good or bad health status) of SHARE participants was obtained as regards their physical health condition, allowing for further con-structing logistic regression models to assess the predictive significance of “Big Five” and their protective role for physical health. Results showed that neuroti-cism was the most significant predictor of physical health for all age groups un-der consideration, while extraversion, agreeableness and openness were not found to significantly affect the self-reported physical health levels of midlife adults aged 50 up to 64. Older adults aged 65 up to 79 were more prone to open-ness, whereas the oldest old individuals aged 80 up to 105 were mainly affected by openness and conscientiousness. . 展开更多
关键词 Big Five Personality traits Physical Health Older Europeans SHARE Principal Component Analysis
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Species’ geographical range, environmental range and traits lead to specimen collection preference of dominant plant species of grasslands in Northern China
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作者 Jingya Zhang Cui Xiao +5 位作者 Xiaoyu Duan Xin Gao Hao Zeng Rong'an Dong Gang Feng Keping Ma 《Plant Diversity》 SCIE CAS CSCD 2024年第3期353-361,共9页
Many different factors,such as species traits,socio-economic factors,geographical and environmental factors,can lead to specimen collection preference.This study aims to determine whether grassland specimen collection... Many different factors,such as species traits,socio-economic factors,geographical and environmental factors,can lead to specimen collection preference.This study aims to determine whether grassland specimen collection in China is preferred by species traits(i.e.,plant height,flowering and fruiting period),environmental range(i.e.,the temperature and precipitation range)and geographical range(i.e.,distribution range and altitudinal range).Ordinary least squares models and phylogenetic generalized linear mixed models were used to analyze the relationships between specimen number and the explanatory variables.Random Forest models were then used to find the most parsimonious multivariate model.The results showed that interannual variation in specimen number between 1900 and 2020 was considerable.Specimen number of these species in southeast China was notably lower than that in northwest China.Environmental range and geographical range of species had significant positive correlations with specimen number.In addition,there were relatively weak but significant associations between specimen number and species trait(i.e.,plant height and flowering and fruiting period).Random Forest models indicated that distribution range was the most important variable,followed by flowering and fruiting period,and altitudinal range.These findings suggest that future floristic surveys should pay more attention to species with small geographical range,narrow environmental range,short plant height,and short flowering and fruiting period.The correction of specimen collection preference will also make the results of species distribution model,species evolution and other works based on specimen data more accurate. 展开更多
关键词 Biological specimen Collection preference Dominant plant species Environmental range Geographical range Species traits
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Effects of Seeding Date and Density on Yield and Agronomic Traits of Millet : A Case Study of Wangu 098 Variety of Millet
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作者 Yinting NIU Le JU +3 位作者 Peiyu CHEN Zhigang YIN Xuejie QIANG Junxia LI 《Asian Agricultural Research》 2024年第4期33-36,共4页
[Objectives]To find out a suitable cultivation technique of Wangu 098 in Nanyang area,speed up the popularization,demonstration and application of Wangu 098,and provide a theoretical and practical basis for adjusting ... [Objectives]To find out a suitable cultivation technique of Wangu 098 in Nanyang area,speed up the popularization,demonstration and application of Wangu 098,and provide a theoretical and practical basis for adjusting the planting structure and realizing the matching of improved varieties and methods.[Methods]The new self-bred millet variety Wangu 098 was used as the material,and the two-factor split zone experimental design was adopted.The effects of different sowing dates and densities on the yield,growth period and agronomic characters of millet were studied.[Results]The interaction of seeding date and density had a great effect on the yield and plant traits of millet.Millet yield was significantly and positively correlated with plant height,panicle length,single panicle weight,panicle grain weight and tiller number.[Conclusions]The reasonable combination of seeding date and density could give full play to the yield potential of millet.According to the experimental results and cultivation experience,the suitable seeding date of millet in Nanyang area is in the first and middle ten days of June,and the best density is about 750000 plants/ha.However,after June 30,the seeding millet did not tiller,so the density should be increased to more than 900000 plants/ha to obtain higher yield.In terms of cultivation and management,timely seeding,reasonable close planting,and coordination of vegetative growth and reproductive growth can make the plant tall and strong,panicle long and thick,and improve the yield of millet. 展开更多
关键词 Wangu 098 MILLET SEEDING date DENSITY AGRONOMIC traits YIELD
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