Degenerate primers were designed based on the conserved sequences of the Actin gene from other plants. Total RNA was extracted from the leaves of lris lacteal var.chinensis Fisch.Koidz. Actin gene fragment was obtaine...Degenerate primers were designed based on the conserved sequences of the Actin gene from other plants. Total RNA was extracted from the leaves of lris lacteal var.chinensis Fisch.Koidz. Actin gene fragment was obtained by reverse transcription polymerase chain reaction （RT-PCR） and cloned into pMD18-T vector. The positive clone identified by PCR was sequenced. The sequencing result showed that the Actin gene fragment from lris lacteal var.chinensis Fisch.Koidz contained about 598 bp, encoding 199 amino acids. Homology comparison with Actin gene sequences of other plants in the GenBank showed that it shared over 82% nueleotide sequence homology and 90% amino acid sequence homology. It indicated that this was the Actin gene. Because of the stability expression ofActin gene, it usually cited as the internal reference to study the expression and regulation of foundation in other genes of lris lacteal var.chinensis Fisch.Koidz well.展开更多
A PCR-based homologous cloning strategy was used to identify an actin gene from the roots of Chinese licorice（Glycyrrhiza uralensis Fisch）. Results of sequence analysis indicate that a 1137 bp cDNA with an open read...A PCR-based homologous cloning strategy was used to identify an actin gene from the roots of Chinese licorice（Glycyrrhiza uralensis Fisch）. Results of sequence analysis indicate that a 1137 bp cDNA with an open reading frame encoding 377 amino acids, actin ortholog, GuActin, was successfully cloned and characterized（GenBank accession No. EU190972）. Thus far, GuActin is the first actin of Chinese licorice that has been identified at a molecular level. Analysis by Northern blot shows that GuActin was expressed strongly in the roots, particularly in radicles than in stems and leaves. These results suggest that GuActin may be a member of the vegetative subfamily of the actin family.展开更多
Actin is a ubiquitous protein and plays essential roles on cellular structure maintenance and cellular motility in both muscle and non-muscle tissues.Multiple genes encoding muscle actin have been identified from the ...Actin is a ubiquitous protein and plays essential roles on cellular structure maintenance and cellular motility in both muscle and non-muscle tissues.Multiple genes encoding muscle actin have been identified from the ascidians,including those expressed in the larval tail muscle,the adult body-wall muscle,and adult heart muscle.In this study,a novel striated non-tail muscle actin gene was identified from the RNA-seq data of Ciona savignyi embryos.Phylogenetic analysis,alignment of the N-terminal amino acid sequences and comparation of diagnostic residues provided evidence that it had high similarity with vertebrate cardiac and skeletal muscle actin.In situ hybridization and promoter-driven GFP reporter assay revealed that it was specifically expressed in the primordia of the oral and atrial siphon.We hereby defined it as siphon-specific muscle actin coding gene(Cs-SMA).A 201 bp(−1350 bp to−1150 bp)sequence containing T-box and Six1/2 binding motif within the upstream region of Cs-SMA confined the expression of GFP in the siphons of electroporated embryos.Six1/2 binding motif was experimentally confirmed to play indispensable role in controlling the siphon-specific expression of Cs-SMA.The tissue-specific expression of Cs-SMA in the siphon primordia indicated its potential crucial roles in Ciona embryogenesis and organogenesis.展开更多
【目的】分析13种植物actin基因的密码子组成、密码子偏性及聚类关系,了解其密码子使用模式及影响密码子使用的因素,为深入研究分子进化及物种进化提供参考。【方法】运用Codon W 1.4.4软件分析13种植物的肌动蛋白基因（actin）密码子...【目的】分析13种植物actin基因的密码子组成、密码子偏性及聚类关系,了解其密码子使用模式及影响密码子使用的因素,为深入研究分子进化及物种进化提供参考。【方法】运用Codon W 1.4.4软件分析13种植物的肌动蛋白基因（actin）密码子组成及使用参数,并对影响密码子偏性的因素进行研究。应用MEGA 4.1对13条基因的CDS序列进行聚类分析,采用SPSS 20.0进行密码子偏性的聚类分析。【结果】双子叶植物中actin基因的GC含量为45.0%～51.2%、GC3s含量为36.3%～53.8%,单子叶植物中GC含量为53.0%～58.3%、GC3s含量为60.9%～75.8%;actin基因在单子叶植物中偏爱G/C结尾的密码子,双子叶植物中偏爱A/T结尾的密码子。GC和GC3s与有效密码子数（ENC）呈极显著负相关（P〈0.01）,相关系数均为-0.906。ENC绘图分析结果表明,actin基因密码子偏性同时受突变和选择压力影响,单子叶植物受选择压力影响的程度大于双子叶植物。基于actin基因密码子偏性的聚类将单子叶植物高粱、玉米聚为一类,水稻、大麦、竹聚为一类,8种双子叶植物聚为一类。【结论】actin基因密码子偏性与碱基组成密切相关,其密码子偏性在单、双子叶植物间存在差异,依据密码子偏性的聚类能在一定程度上反映物种间的亲缘关系。展开更多
基金Supported by the Postdoctoral Scientific Research Foundation of Heilongjiang Province(LBH-Q10144)the Natural Science Foundation of Heilongjiang Province(C201112)Northeast Agricultural University Doctoral Research Fund(200830)
文摘Degenerate primers were designed based on the conserved sequences of the Actin gene from other plants. Total RNA was extracted from the leaves of lris lacteal var.chinensis Fisch.Koidz. Actin gene fragment was obtained by reverse transcription polymerase chain reaction （RT-PCR） and cloned into pMD18-T vector. The positive clone identified by PCR was sequenced. The sequencing result showed that the Actin gene fragment from lris lacteal var.chinensis Fisch.Koidz contained about 598 bp, encoding 199 amino acids. Homology comparison with Actin gene sequences of other plants in the GenBank showed that it shared over 82% nueleotide sequence homology and 90% amino acid sequence homology. It indicated that this was the Actin gene. Because of the stability expression ofActin gene, it usually cited as the internal reference to study the expression and regulation of foundation in other genes of lris lacteal var.chinensis Fisch.Koidz well.
基金Supported by the Natural Science Foundation of Fujian Province, China(No.200804011)the Special Foundation for Young Scientists of Fujian Province, China(No.2006F3113)+1 种基金Scientific Research Foundation of Educational Committee of Fujian Province, China(No.JA07151) Technology Research and Development Program of Quanzhou’ Science and Technology Bureau, China(No.2007N6)
文摘A PCR-based homologous cloning strategy was used to identify an actin gene from the roots of Chinese licorice（Glycyrrhiza uralensis Fisch）. Results of sequence analysis indicate that a 1137 bp cDNA with an open reading frame encoding 377 amino acids, actin ortholog, GuActin, was successfully cloned and characterized（GenBank accession No. EU190972）. Thus far, GuActin is the first actin of Chinese licorice that has been identified at a molecular level. Analysis by Northern blot shows that GuActin was expressed strongly in the roots, particularly in radicles than in stems and leaves. These results suggest that GuActin may be a member of the vegetative subfamily of the actin family.
基金funded by the National Key Research and Development Program of China(Nos.2019YFE0190900,2018YFD0900705).
文摘Actin is a ubiquitous protein and plays essential roles on cellular structure maintenance and cellular motility in both muscle and non-muscle tissues.Multiple genes encoding muscle actin have been identified from the ascidians,including those expressed in the larval tail muscle,the adult body-wall muscle,and adult heart muscle.In this study,a novel striated non-tail muscle actin gene was identified from the RNA-seq data of Ciona savignyi embryos.Phylogenetic analysis,alignment of the N-terminal amino acid sequences and comparation of diagnostic residues provided evidence that it had high similarity with vertebrate cardiac and skeletal muscle actin.In situ hybridization and promoter-driven GFP reporter assay revealed that it was specifically expressed in the primordia of the oral and atrial siphon.We hereby defined it as siphon-specific muscle actin coding gene(Cs-SMA).A 201 bp(−1350 bp to−1150 bp)sequence containing T-box and Six1/2 binding motif within the upstream region of Cs-SMA confined the expression of GFP in the siphons of electroporated embryos.Six1/2 binding motif was experimentally confirmed to play indispensable role in controlling the siphon-specific expression of Cs-SMA.The tissue-specific expression of Cs-SMA in the siphon primordia indicated its potential crucial roles in Ciona embryogenesis and organogenesis.
文摘【目的】分析13种植物actin基因的密码子组成、密码子偏性及聚类关系,了解其密码子使用模式及影响密码子使用的因素,为深入研究分子进化及物种进化提供参考。【方法】运用Codon W 1.4.4软件分析13种植物的肌动蛋白基因（actin）密码子组成及使用参数,并对影响密码子偏性的因素进行研究。应用MEGA 4.1对13条基因的CDS序列进行聚类分析,采用SPSS 20.0进行密码子偏性的聚类分析。【结果】双子叶植物中actin基因的GC含量为45.0%～51.2%、GC3s含量为36.3%～53.8%,单子叶植物中GC含量为53.0%～58.3%、GC3s含量为60.9%～75.8%;actin基因在单子叶植物中偏爱G/C结尾的密码子,双子叶植物中偏爱A/T结尾的密码子。GC和GC3s与有效密码子数（ENC）呈极显著负相关（P〈0.01）,相关系数均为-0.906。ENC绘图分析结果表明,actin基因密码子偏性同时受突变和选择压力影响,单子叶植物受选择压力影响的程度大于双子叶植物。基于actin基因密码子偏性的聚类将单子叶植物高粱、玉米聚为一类,水稻、大麦、竹聚为一类,8种双子叶植物聚为一类。【结论】actin基因密码子偏性与碱基组成密切相关,其密码子偏性在单、双子叶植物间存在差异,依据密码子偏性的聚类能在一定程度上反映物种间的亲缘关系。
