Oscillatory and anti-oscillatory motifs in genetic regulatory networks

Recently, self-sustained oscillatory genetic regulatory networks （GRNs） have attracted significant attention in the biological field. Given a GRN, it is important to anticipate whether the network could generate oscillation with proper parameters, and what the key ingredients for the oscillation are. In this paper the ranges of some function-related parameters which are favorable to sustained oscillations are considered. In particular, some oscillatory motifs appearing with high-frequency in most of the oscillatory GRNs are observed. Moreover, there are some anti-oscillatory motifs which have a strong oscillation repressing effect. Some conclusions analyzing these motif effects and constructing oscillatory GRNs are provided.

基于Motif的图采样算法

图采样通过对图数据进行约简操作,获得比原图的规模更小的图结构,进而服务于图谱分析、图可视化等下游任务.现有的图采样算法侧重于保留图中显著的结构特征而忽略了节点属性,导致采样图在许多下游任务如频繁模式挖掘等,难以取得预期效果.为此,提出基于Motif的节点有偏采样算法(Motif-Based Node Biased Sampling,MNBS),利用频繁Motif结构重新定义图中节点的重要性,随后进行有偏节点采样,实现融合节点属性与结构特征的采样.为了快速识别频繁Motif模式,设计了具有“提前终止”特性的Motif模式快速发现算法(Fast Motif-Pattern Discovery,FMPD),能高效且准确地发现Motif模式以支持图采样.实验表明,MNBS采样算法在多项指标上优于其他基线算法,其对数归一化累积组相关性指标平均降低0.54,使用包含“提前终止”特性策略的FMPD算法的时间消耗和内存消耗比基线算法分别降低56.1%和29.8%.

基于3D-motif法的刮研表面形貌表征

针对刮研表面微观特性和功能机理研究中缺少表面形貌量化表征方法的问题,采用3D-motif法对刮研表面形貌进行表征。使用LI-3型接触式三维表面形貌测量仪对刮研表面进行测量,并利用三维点云数据生成刮研表面的二维灰度图像。然后,根据3D-motif法中集水盆地的定义,采用分水岭算法对刮研表面的灰度图像进行motif分割与合并。以不同精度等级的刮研表面的整体纹理区域motif分割结果为对象,定义了特征显著度并提取计算了刮研表面在2种不同面积尺度(25 mm^(2)和0.25 mm^(2))上的深度、面积、方向角、各向异性率、扁平系数和特征显著度等6项motif参数。结合部分motif参数的分布情况和motif数量的变化趋势,从形貌特征的尺寸和形态两个方面对刮研表面进行了表征和分析,实现了以较少参数完整表征刮研表面的三维形貌。研究结果可为后续刮研表面微观特性的深入分析提供理论基础。

C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 pathway as a therapeutic target and regulatory mechanism for spinal cord injury

Spinal cord injury involves non-reversible damage to the central nervous system that is characterized by limited regenerative capacity and secondary inflammatory damage.The expression of the C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 axis exhibits significant differences before and after injury.Recent studies have revealed that the C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 axis is closely associated with secondary inflammatory responses and the recruitment of immune cells following spinal cord injury,suggesting that this axis is a novel target and regulatory control point for treatment.This review comprehensively examines the therapeutic strategies targeting the C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 axis,along with the regenerative and repair mechanisms linking the axis to spinal cord injury.Additionally,we summarize the upstream and downstream inflammatory signaling pathways associated with spinal cord injury and the C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 axis.This review primarily elaborates on therapeutic strategies that target the C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 axis and the latest progress of research on antagonistic drugs,along with the approaches used to exploit new therapeutic targets within the C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 axis and the development of targeted drugs.Nevertheless,there are presently no clinical studies relating to spinal cord injury that are focusing on the C-C motif chemokine ligand 2/C-C motif chemokine receptor 2 axis.This review aims to provide new ideas and therapeutic strategies for the future treatment of spinal cord injury.

Docking of Human Band 3 Anion Transporter Proteins with Their Plasmodium falciparum Interactors Based on Short Linear Motifs

Plasmodium (P.) falciparum is a pathogen that causes severe forms of malaria. Protein interactions have been shown to occur between P. falciparum and human erythrocytes in human blood. The Band 3 Anion Transporter (B3AT) protein is considered the main invasive pathway for the parasite in erythrocytes that causes clinical symptoms for malaria in humans. The interactions between P. falciparum parasites and erythrocytes along this receptor have previously been explored. Short linear motifs (SLIMs) are short linear mediator sequences that involve several biological processes, acting as mediators of protein interactions identifiable by computational tools such as SLiMFinder. For a given protein, the identification of SLIMs allows predicting its interactors. Using the SLIMs approach, protein-protein interaction network analyses between P. falciparum and its human host, were used to identify a tryptophan-rich protein, A5K5E5_PLAVS as an essential interactor of B3AT. To better understand the interaction mechanism, a guided protein-protein docking approach based on SLIM motifs was performed for human B3AT and A5K5E5_PLAVS. The highlights of this important interaction between P. falciparum and its human host have the potential to pave the way to identify new therapeutic candidates.

Multi-layer network embedding on scc-based network with motif

Interconnection of all things challenges the traditional communication methods,and Semantic Communication and Computing(SCC)will become new solutions.It is a challenging task to accurately detect,extract,and represent semantic information in the research of SCC-based networks.In previous research,researchers usually use convolution to extract the feature information of a graph and perform the corresponding task of node classification.However,the content of semantic information is quite complex.Although graph convolutional neural networks provide an effective solution for node classification tasks,due to their limitations in representing multiple relational patterns and not recognizing and analyzing higher-order local structures,the extracted feature information is subject to varying degrees of loss.Therefore,this paper extends from a single-layer topology network to a multi-layer heterogeneous topology network.The Bidirectional Encoder Representations from Transformers(BERT)training word vector is introduced to extract the semantic features in the network,and the existing graph neural network is improved by combining the higher-order local feature module of the network model representation network.A multi-layer network embedding algorithm on SCC-based networks with motifs is proposed to complete the task of end-to-end node classification.We verify the effectiveness of the algorithm on a real multi-layer heterogeneous network.

The Classic Shaping of Typical Female Images by Mulan Motif in Historical Times-Historical Review and Textual Sorting of the Motif

The image of Mulan is well known to the public as an important symbol in the dissemination of Chinese excellent traditional culture.This paper aims to summarise the mother-title from traditional canonical texts,to explore the content and value of sustainable IP development,and to study a large number of derivatives with the image of Mulan as the mother-title,based on the wide circulation of the prototype of the mother-title“The Poem of Mulan”(木兰辞)and the positive values conveyed by the content.Through the processing and imagination of scholars and writers on the mother text in the past generations,the image of Mulan has gradually formed a relatively stable cultural communication theme in the process of dissemination in China’s historical period,and many adaptations with international influence based on the mother title of Mulan have emerged in the foreign dissemination,so through the combing and summarisation of the textual works of various periods both at home and abroad,we will dig out the textual transmission of the mother title of Mulan,which is representative of the mother title of China’s excellent traditional culture,and the development of the Chinese spiritual core.The Development of the Chinese Spiritual Kernel.This paper adopts research methods such as documentary evidence method and discourse analysis to show the textual flow of Mulan’s parent theme in a more diversified form.

Targeting neuronal PAS domain protein 2 and KN motif/ankyrin repeat domains 1:Advances in type 2 diabetes therapy

This editorial summarizes the latest literature on the roles of neuronal PAS domain protein 2 and KN motif/ankyrin repeat domain 1 in type 2 diabetes(T2D).We highlight their involvement inβ-cell dysfunction,explore their potential as therapeutic targets,and discuss the implications for new treatment strategies.We offer valuable insights into relevant gene regulation and cellular mechanisms relevant for the targeted management of T2D.

基于motif连通性的社区搜索方法

社区搜索的目标是从数据图中得到包含查询顶点的紧密子图,在社会学、生物学等领域有着广泛应用。针对现有基于子图连通性的社区模型的基础连通结构都是完全连通图,无法满足实际应用中用户对社区结构多样性的需求的问题,提出一种基于motif连通性的社区搜索方法,其中包括基于motif连通性的社区(MCC)模型以及两个相应的社区搜索算法——MPCS(Motif-Processed Community Search)算法和基于MP-index的社区搜索算法。MCC模型可以协助用户自由指定社区的基础连通结构,MPCS算法可以用来解决MCC的搜索问题。此外,提出两个分别针对motif实例搜索过程及所属社区判断过程的剪枝优化技术。最后,设计了MP-index以避免社区搜索过程中的冗余遍历操作。在多个真实数据集上进行实验的结果表明:剪枝优化可以使MPCS算法的耗时减少60%~85%,而基于MP-index的社区搜索算法相较于加入剪枝优化的MPCS算法,效率提升普遍达到了2~3个数量级。可见,所提方法在商品推荐和社交网络等问题上有着实际应用价值。

Influence of coupling asymmetry on signal amplification in a three-node motif

The three-node feedforward motif has been revealed to function as a weak signal amplifier. In this motif, two nodes(input nodes) receive a weak input signal and send it unidirectionally to the third node(output node). Here, we change the motif's unidirectional couplings(feedforward) to bidirectional couplings(feedforward and feedback working together).We find that a small asymmetric coupling, in which the feedforward effect is stronger than the feedback effect, may enable the three-node motif to go through two distinct dynamic transitions, giving rise to a double resonant signal response. We present an analytical description of the double resonance, which agrees with the numerical findings.

人端粒i-motif:结构、识别和生物学功能

人端粒i-motif是由人端粒末端富含胞嘧啶(cytosine,C)的核酸序列形成的特殊高级结构,在端粒重复序列RNA(telomeric repeat-containing RNA,TERRA)转录调控、端粒功能维持和端粒酶活性抑制等方面发挥重要作用。端粒i-motif与多种癌症的发生密切相关,是癌症治疗的一个新靶点。相对于核酸G-四链体等高级结构,端粒i-motif稳定性较差,且受溶液pH、离子状态和拥挤环境等的影响,其在近中性的生理环境下能否稳定形成,长久以来存在争议。采用体外筛选的小分子配体特异性识别并稳定端粒i-motif,为探究该结构的生物学功能以及以端粒为靶点的癌症治疗提供了新策略,是目前的研究热点。但相对于其他核酸高级结构,目前所报道的端粒i-motif特异性配体分子仍较为匮乏。因此,本文将简要介绍i-motif结构的发现历程及其结构特征,并着重对体外环境下人端粒i-motif稳定性的影响因素,以及目前已报道的端粒i-motif配体分子及其生物学功能和调控机制等进行综述。文章内容将为近生理条件下端粒i-motif的结构研究和以其为靶点的特异性配体筛选提供基础,同时也为人端粒相关的癌症机制探究和治疗策略开发等提供思路与方向。

RBMX通过下调PKM2抑制膀胱癌细胞的增殖、迁移、侵袭和糖酵解

目的探讨X连锁RNA结合基序蛋白(RBMX)对膀胱癌细胞(1376细胞和UC-3细胞)的增殖、迁移、侵袭的影响以及其在糖酵解中的作用。方法采用慢病毒表达系统和siRNA干扰技术,分别构建RBMX过表达和敲低的膀胱癌细胞模型(1376细胞和UC-3细胞)。采用RT-qPCR和Westernblotting分别在mRNA水平和蛋白水平上检测细胞模型是否构建成功。通过EdU增殖实验和克隆形成实验检测过表达和敲低RBMX后细胞的生长和集落形成能力,同时通过Transwell实验分析过表达和敲低RBMX后对细胞迁移、侵袭能力的影响;随后,采用Westernblotting检测过表达和敲低RBMX后糖酵解关键蛋白PKM1(M1型丙酮酸激酶)和PKM2(M2型丙酮酸激酶)的表达变化;最后,利用葡萄糖和乳酸检测试剂盒分析过表达和敲低RBMX对膀胱癌细胞糖酵解的影响。结果RT-qPCR和Westernblotting结果显示,过表达RBMX膀胱癌细胞的mRNA和蛋白表达水平显著高于阴性对照组(P<0.05),敲低RBMX膀胱癌细胞的mRNA和蛋白表达水平显著低于阴性对照组(P<0.05)。过表达RBMX明显抑制膀胱癌细胞的增殖、克隆形成、迁移和侵袭,敲低RBMX则作用相反。Westernblotting实验结果显示,过表达RBMX使PKM1表达上升,PKM2表达下降,敲低RBMX则作用相反。葡萄糖消耗及乳酸生成实验表明,过表达RBMX均能抑制膀胱癌细胞葡萄糖消耗及乳酸生成(P<0.05),敲低RBMX均能促进膀胱癌细胞葡萄糖消耗及乳酸生成(P<0.05)。结论RBMX通过下调PKM2抑制膀胱癌的发生发展和糖酵解能力,有望成为膀胱癌诊断和治疗的潜在分子靶标。

Blocking postsynaptic density-93 binding to C-X3-C motif chemokine ligand 1 promotes microglial phenotypic transformation during acute ischemic stroke

We previously reported that postsynaptic density-93 mediates neuron-microglia crosstalk by interacting with amino acids 357–395 of C-X3-C motif chemokine ligand 1(CX3 CL1) to induce microglia polarization. More importantly, the peptide Tat-CX3 CL1(comprising amino acids 357–395 of CX3 CL1) disrupts the interaction between postsynaptic density-93 and CX3 CL1, reducing neurological impairment and exerting a protective effect in the context of acute ischemic stroke. However, the mechanism underlying these effects remains unclear. In the current study, we found that the pro-inflammatory M1 phenotype increased and the anti-inflammatory M2 phenotype decreased at different time points. The M1 phenotype increased at 6 hours after stroke and peaked at 24 hours after perfusion, whereas the M2 phenotype decreased at 6 and 24 hours following reperfusion. We found that the peptide Tat-CX3 CL1(357–395 aa) facilitates microglial polarization from M1 to M2 by reducing the production of soluble CX3 CL1. Furthermore, the a disintegrin and metalloprotease domain 17(ADAM17) inhibitor GW280264 x, which inhibits metalloprotease activity and prevents CX3 CL1 from being sheared into its soluble form, facilitated microglial polarization from M1 to M2 by inhibiting soluble CX3 CL1 formation. Additionally, Tat-CX3 CL1(357–395 aa) attenuated long-term cognitive deficits and improved white matter integrity as determined by the Morris water maze test at 31–34 days following surgery and immunofluorescence staining at 35 days after stroke, respectively. In conclusion, Tat-CX3 CL1(357–395 aa) facilitates functional recovery after ischemic stroke by promoting microglial polarization from M1 to M2. Therefore, the Tat-CX3 CL1(357–395 aa) is a potential therapeutic agent for ischemic stroke.

CXCL5通过诱导血管钙化参与颈动脉斑块的形成

背景:CXC基序趋化因子5(CXC-motif chemokine 5,CXCL5)为上皮细胞衍生的中性粒细胞激活肽,研究发现其可能参与动脉病变。然而,CXCL5在血管钙化中的作用未见报道。目的:探讨CXCL5在颈动脉粥样硬化的血管钙化中的作用。方法:①细胞实验:将小鼠血管平滑肌细胞分成以下各组:成骨培养基组,Vector组(空白质粒转染到细胞中),CXCL5组(CXCL5质粒转染到细胞中),si-NC组(CXCL5阴性对照siRNA转染到细胞中),si-CXCL5组(CXCL5 siRNA转染到细胞中),Vector+LY2157299组和CXCL5+LY2157299组(细胞转染24 h后,将转化生长因子β受体1激酶抑制剂LY2157299加入细胞中)。进行茜素红染色、碱性磷酸酶染色和钙含量测定以评估血管平滑肌细胞成骨分化水平。②动物实验:48只ApoE-/-小鼠随机分成4组:Con+si-NC组、Con+si-CXCL5组、CAS+si-NC组和CAS+si-CXCL5组,前2组不造模,尾静脉注射si-NC或si-CXCL5慢病毒;后2组制备颈动脉粥样硬化模型,尾静脉注射si-NC或si-CXCL5慢病毒。采用Von Kossa染色和免疫组织化学染色评估小鼠颈动脉血管钙化以及CXCL5、转化生长因子β受体1表达情况。结果与结论:①CXCL5组细胞Runt相关转录因子2蛋白水平上调、α-平滑肌肌动蛋白水平下调,si-CXCL5组中的发现与其相反;CXCL5过表达上调了转化生长因子β受体1水平,而CXCL5敲低抑制了转化生长因子β受体1水平。②与Vector组相比,CXCL5组细胞茜素红染色的强度、碱性磷酸酶活性和钙含量显著增加(P<0.05);与si-NC组相比,si-CXCL5组上述2项指标显著降低(P<0.05);当用LY2157299抑制转化生长因子β受体1表达时,CXCL5对平滑肌细胞的成骨转化作用减弱。③与Con+si-NC组相比,CAS+si-NC组大鼠颈动脉中CXCL5蛋白表达和血管钙化面积显著增加(P<0.05);与CAS+si-NC组相比,CAS+si-CXCL5组颈动脉中上述2项指标显著降低(P<0.05)。④与Con+si-NC组相比,CAS+si-NC组大鼠颈动脉中Runt相关转录因子2蛋白表达显著增加(P<0.05)和α-平滑肌肌动蛋白表达显著降低(P<0.05);与CAS+si-NC组相比,CAS+si-CXCL5组颈动脉中上述2项指标呈相反变化(P<0.05)。⑤结果说明,CXCL5通过激活转化生长因子β受体1通路诱导血管平滑肌细胞成骨样转化,抑制CXCL5表达对于改善颈动脉粥样硬化小鼠颈动脉血管钙化是有效的。

血清CX3CL1、CCL17与类风湿关节炎相关间质性肺疾病患者肺功能及预后的关系研究

目的分析血清C-X3-C基序趋化因子配体1(CX3CL1)、C-C基序趋化因子配体17(CCL17)与类风湿关节炎相关间质性肺疾病(RA-ILD)患者肺功能及预后的关系。方法选取2017年1月—2018年1月上海中医药大学附属龙华医院风湿科收治RA患者295例,根据是否合并ILD分为ILD组115例和非ILD组180例,根据预后情况将RA-ILD患者分为预后不良亚组和预后良好亚组。检测血清CX3CL1、CCL17水平及肺功能指标[第1秒用力呼气容积(FEV_(1))、用力肺活量(FVC)、FEV_(1)/FVC和肺一氧化碳弥散量(DLCO)]。采用Pearson相关性分析RA-ILD患者血清CX3CL1、CCL17水平与肺功能指标的相关性,多因素Logistic回归分析RA-ILD患者预后不良的影响因素,受试者工作特征(ROC)曲线分析血清CX3CL1、CCL17水平预测RA-ILD患者预后不良的价值。结果与非ILD组比较,ILD组血清CX3CL1、CCL17水平升高,FEV_(1)、FVC、FEV_(1)/FVC、DLCO降低(t/P=14.359/<0.001、13.855/<0.001、12.015/<0.001、2.732/0.007、14.749/<0.001、14.010/<0.001)。Pearson相关性分析显示,RA-ILD患者血清CX3CL1、CCL17水平与FEV_(1)、FVC、FEV_(1)/FVC、DLCO呈负相关(r=-0.762、-0.711、-0.577、-0.534、-0.707、-0.692、-0.735、-0.672,P均<0.001)。随访5年,115例RA-ILD患者预后不良发生率为46.96%。多因素Logistic回归分析显示,普通型间质性肺炎和高分辨率电子计算机断层扫描(HRCT)评分、CX3CL1、CCL17升高为RA-ILD患者预后不良的独立危险因素[OR(95%CI)=3.745(1.245~11.264)、1.051(1.008~1.095)、1.008(1.003~1.012)、1.037(1.012~1.062)],FEV_(1)、FEV_(1)/FVC、DLCO升高为独立保护因素[OR(95%CI)=0.952(0.896~0.988)、0.892(0.867~0.981)、0.857(0.789~0.949)]。ROC曲线分析显示,血清CX3CL1、CCL17水平联合预测RA-ILD患者预后不良的曲线下面积为0.875,大于CX3CL1、CCL17单独预测的0.783、0.788(Z=2.807、2.698,P=0.005、0.007)。结论RA-ILD患者血清CX3CL1、CCL17水平升高,与肺功能降低和预后不良有关,血清CX3CL1、CCL17水平联合检测对RA-ILD患者预后具有较高的预测价值。

三联体基序包含蛋白28在胃癌组织中的表达及其对胃癌HGC-27细胞侵袭、迁移、增殖和硼替佐米诱导的细胞凋亡的影响

目的:探讨三联体基序包含蛋白28(TRIM28)在胃癌组织中的表达及其对胃癌HGC-27细胞侵袭、迁移、增殖和硼替佐米(BTZ)诱导的细胞凋亡的影响。方法:收集10例胃癌患者的癌组织和癌旁组织,采用免疫组化和实时荧光定量PCR(RT-qPCR)分别检测TRIM28阳性率及mRNA的表达水平。采用RNA干扰技术敲低人胃癌细胞株HGC-27中的TRIM28表达,采用Transwell和划痕愈合实验探究敲低TRIM28表达对胃癌细胞的侵袭、迁移能力的影响,采用MTT法检测细胞增殖能力,采用流式细胞术检测细胞的凋亡情况。结果:胃癌组织中TRIM28阳性率及其mRNA表达水平高于癌旁组织(均P<0.05)。敲低TRIM28表达可抑制胃癌细胞的侵袭和迁移能力。敲低TRIM28表达显著抑制了胃癌细胞的增殖能力,并显著增强了BTZ诱导的细胞凋亡。结论:TRIM28在胃癌组织过表达,且与胃癌HGC-27细胞的侵袭、迁移、增殖和凋亡有关,同时影响BTZ的抗肿瘤作用。

野生稻CBF/DREB1转录因子的鉴定与生物信息学分析

低温冷害是限制栽培稻地域分布和产量的重要因素之一,严重影响我国的粮食安全。以CBF/DREB1为核心的C-重复结合因子-冷调节基因(CBF-COR)途径是水稻适应低温的重要信号传导途径。基于稻属9种植物的全基因测序结果和隐马尔可夫模型(HMM)搜索,共鉴定出71个CBF/DREB1基因序列。所有基因均无内含子,由单个外显子组成。大部分DREB1s呈弱酸性,所有DREB1s亲水性平均值<0。进化树分析进一步将其分为3个组:DREB1A/1B/1H、DREB1C/1E/1F/1G和DREB1D/1I/1J,各组成员除AP2保守结构域和侧翼序列外,其他保守基序组成差别较大。适应性进化分析粳亚种和其他水稻的直系同源基因对,发现OsDREB1A/ObDREB1A、OsDREB1D/OnDREB1D、OsDREB1I/OsIDREB1I和OsDREB1J/OsIDREB1J四对基因非同义替换/同义替换(Ka/Ks)值均>1,受到正选择压力。旁系同源基因之间启动子顺式元件种类和数量差异较大,直系同源基因的启动子顺式元件种类和数量很相似。对日本晴、93-11和东乡野生稻7 d幼苗4℃冷处理2 h的实时荧光定量PCR分析发现早期冷响应基因可分为激活型(DREB1A/1B/1C/1E/1F/1G/1H)和抑制型(DREB1D/1I/1J)。在日本晴、93-11和东乡野生稻冷激活型基因中,DREB1B/1G/1H均是冷处理后响应最快的一级冷响应因子,且启动子均含有至少一个拷贝的CAMTA转录因子结合元件CM2(CCGCGT)。OrDREB1B/1C/1E/1F/1G/1H在东乡野生稻4℃冷处理4 h后的表达量均高于栽培稻同源基因的表达量。9种稻属植物的CBF/DREB1基因亚家族的分子进化分析结果为低温抗性基因的挖掘和利用提供了前期基础。

同源异型盒基因A5、三结构域蛋白14与结直肠癌的关系

目的探讨结直肠癌组织同源异型盒基因A5(HOXA5)、三结构域蛋白14(TRIM14)蛋白表达水平与临床病理特征及患者预后的关系。方法回顾性收集整理2016年5月至2018年5月期间于河南中医药大学郑州人民医院确诊的120例结直肠癌患者癌组织及癌旁组织标本及相关临床资料,采用免疫组化法检测组织HOXA5、TRIM14蛋白表达水平;分析HOXA5、TRIM14水平与结直肠癌患者临床病理特征及预后的关系;采用Kaplan-Meier法分析组织中HOXA5、TRIM14表达与结直肠癌5年生存率的关系;采用Cox比例风险回归模型分析结直肠癌5年预后影响因素。结果结直肠癌组织中TRIM14蛋白阳性率为73.33%,明显高于癌旁组织的10.00%,HOXA5蛋白阳性率为27.50%,明显低于癌旁组织的81.67%,差异均有统计学意义(P<0.05)。TRIM1蛋白阳性表达患者肿瘤低分化比例为42.05%,浸润深度T_(3)~T_(4)比例为72.73%,有淋巴结转移比例为47.73%,有远处转移比例为29.55%,明显高于TRIM1蛋白阴性表达的12.50%、37.50%、12.50%、6.25%,差异均有统计学意义(P<0.05);HOXA5蛋白阴性表达患者肿瘤低分化比例为41.38%,浸润深度T3~T4比例为77.01%,有淋巴结转移比例为48.28%,有远处转移比例为29.89%,明显高于HOXA5蛋白阳性表达的15.15%、27.27%、12.12%、6.06%,差异均有统计学意义(P<0.05)。结直肠癌组织中HOXA5阴性表达和TRIM14阳性表达患者的5年生存率分别为57.47%、59.09%,明显低于HOXA5阳性表达患者的90.91%和TRIM14阴性表达患者的87.50%,差异均有统计学意义(P<0.05)。死亡组患者有淋巴结转移比例为85.00%,有远处转移比例为55.00%,明显高于生存组的15.00%、7.50%,差异均有统计学意义(P<0.05)。经Cox比例风险回归模型分析结果显示,TRIM14是结直肠癌患者5年内死亡的独立危险因素,HOXA5是结直肠癌患者5年内死亡的保护因素(P<0.05)。结论结直肠癌组织中TRIM14呈高表达状态,HOXA5呈低表达状态,两者均与TNM分期、肿瘤分化程度、浸润深度等临床病理特征及预后相关,有作为预后标志物及治疗靶点的潜力。

融合二连通模体结构信息的节点分类算法

节点表示学习将图结构数据信息编码到低维的潜在空间中,在节点分类、聚类、链路预测等机器学习任务中被广泛应用。在复杂网络中,节点与节点之间不仅存在直接相连的低阶结构,也存在以特殊连接模式形成的高阶结构,称为模体。提出一种融合二连通模体结构信息的节点分类算法(FMI),利用节点间高阶二连通模体信息学习节点表示,完成节点分类任务。首先,统计网络中的二连通模体,利用其中信息提出一个节点重要性的度量指标——模体比值。根据模体比值计算采样概率进行邻域采样;构造一个带权辅助图以融合网络节点连接的低阶关系与高阶关系,对节点进行加权邻域聚合以得到节点表示。在5个数据集Cora、Citeseer、Pubmed、Wiki和DBLP上执行节点分类任务,与5种经典基准算法进行对比,所提算法FMI在准确度和F1-分数等指标上表现良好。

基于模体和复杂网络的成都市交通旅客出行研究

设计出行模体模型,对旅客出行序列进行抽取转化,构建基于铁路和航空出行旅客的出行模体,基于四川省成都市的旅客出行数据进行实证分析。2节点至4节点构成的旅客出行模体,可以表示绝大多数的旅客出行模式。主要出行模体为2个节点间的单向单次出行和往返出行,并且随时间推移,铁路出行对用户的吸引力逐渐增加,航空出行逐渐减少。研究铁路旅客出行网络和航空旅客出行网络特征,2种出行网络均为异质性网络,网络中大度节点倾向于连接小度节点,网络聚类系数较大,网络中不同站点连接紧密。成都市的铁路人群出行网络结构稳定且大多集中于我国东南部地区,航空出行网络逐步发展且具有更高的分散性。网络效率研究结果表明,旅客出行网络连通性一般,多集中在特定地区。